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Diffuse hemispheric glioma with H3 p.K28M (K27M) mutation: Unusual non-midline presentation of diffuse midline glioma, H3 K27M-altered?
Donev, Kliment , Sundararajan, Vanitha, Chambers, Meagan , Abdullaev, Zied , Quezado, Martha , Cimino, Patrick J. , Valério, Ediel , Castro, João Víctor Alves de , Wolff, Beatriz Martins , Kulikowski, Leslie Domenici , Aldape, Kenneth , Ida, Cristiane M. , Johnson, Derek, Ida, Cristiane M , Cimino, Patrick J , Johnson, Derek R. , Balan, Jagadheshwar , Paulson, Vera , Scherpelz, Kathryn P. , Pratt, Drew , Carraro, Dirce Maria , Torrezan, Giovana Tardin , Costa, Felipe D’Almeida

Journal of Neuropathology & Experimental Neurology | February 9, 2024 | Volume: 83 | Issue: 5 | Pages: 357-364

10.1093/jnen/nlae018 | PMID 38447592 Get It

Abstract Diffuse midline glioma, H3 K27-altered (DMG-H3 K27) is an aggressive group of diffuse gliomas that predominantly occurs in pediatric patients, involves midline structures, and displays loss of H3 p.K28me3 (K27me3) expression by immunohistochemistry and characteristic genetic/epigenetic profile. Rare examples of a diffuse glioma with an H3 p.K28M (K27M) mutation and without involvement of the midline structures, so-called “diffuse hemispheric glioma with H3 p.K28M (K27M) mutation” (DHG-H3 K27), have been reported. Herein, we describe 2 additional cases of radiologically confirmed DHG-H3 K27 and summarize previously reported cases. We performed histological, immunohistochemical, molecular, and DNA methylation analysis and provided clinical follow-up in both cases. Overall, DHG-H3 K27 is an unusual group of diffuse gliomas that shows similar clinical, histopathological, genomic, and epigenetic features to DMG-H3 K27 as well as enrichment for activating alterations in MAPK pathway genes. These findings suggest that DHG-H3 K27 is closely related to DMG-H3 K27 and may represent an unusual presentation of DMG-H3 K27 without apparent midline involvement and with frequent MAPK pathway activation. Detailed reports of additional cases with clinical follow-up will be important to expand our understanding of this unusual group of diffuse gliomas and to better define the clinical outcome and how to classify DHG-H3 K27.
African American race does not confer an increased risk of clinical events in patients with primary sclerosing cholangitis
Yazdanfar, Maryam , Zepeda, Joseph , Dean, Richard , Wu, Jialin , Goldberg, David S. , Lammert, Craig , Prenner, Stacey, Reddy, K. Rajender , Pratt, Daniel S. , Forman, Lisa , Assis, David N. , Lytvyak, Ellina , Carey, Elizabeth J. , Korzenik, Joshua R. , Karagozian, Raffi, Hameed, Bilal , Chandna, Shaun , Yu, Lei , Bowlus, Christopher L. , Korzenik, Joshua , Bowlus, Christopher L , Lytvyak, Ellina , Levy, Cynthia , Montaño‐Loza, Aldo J. , Gordon, Stuart C. , Ahn, Joseph , Schlansky, Barry L

Hepatology Communications | January 29, 2024 | Volume: 8 | Issue: 2 | Pages: No page available

10.1097/hc9.0000000000000366 | PMID 38285883 Get It

Background: The natural history of primary sclerosing cholangitis (PSC) among African Americans (AA) is not well understood. Methods: Transplant-free survival and hepatic decompensation–free survival were assessed using a retrospective research registry from 16 centers throughout North America. Patients with PSC alive without liver transplantation after 2008 were included. Diagnostic delay was defined from the first abnormal liver test to the first abnormal cholangiogram/liver biopsy. Socioeconomic status was imputed by the Zip code. Results: Among 850 patients, 661 (77.8%) were non-Hispanic Whites (NHWs), and 85 (10.0%) were AA. There were no significant differences by race in age at diagnosis, sex, or PSC type. Inflammatory bowel disease was more common in NHWs (75.8% vs. 51.8% p =0.0001). The baseline (median, IQR) Amsterdam-Oxford Model score was lower in NHWs (14.3, 13.4–15.2 vs. 15.1, 14.1–15.7, p =0.002), but Mayo risk score (0.03, −0.8 to 1.1 vs. 0.02, −0.7 to 1.0, p =0.83), Model for End-stage Liver Disease (5.9, 2.8–10.7 vs. 6.4, 2.6–10.4, p =0.95), and cirrhosis (27.4% vs. 27.1%, p =0.95) did not differ. Race was not associated with hepatic decompensation, and after adjusting for clinical variables, neither race nor socioeconomic status was associated with transplant-free survival. Variables independently associated with death/liver transplant (HR, 95% CI) included age at diagnosis (1.04, 1.02–1.06, p <0.0001), total bilirubin (1.06, 1.04–1.08, p <0.0001), and albumin (0.44, 0.33–0.61, p <0.0001). AA race did not affect the performance of prognostic models. Conclusions: AA patients with PSC have a lower rate of inflammatory bowel disease but similar progression to hepatic decompensation and liver transplant/death compared to NHWs.
TMET-02. CLINICAL EFFICACY OF ONC201 IN H3K27M-MUTANT DIFFUSE MIDLINE GLIOMAS IS DRIVEN BY DISRUPTION OF INTEGRATED METABOLIC AND EPIGENETIC PATHWAYS
Venneti, Sriram , Sweha, Stefan R. , Pun, Matthew , Wen, Patrick Y. , Arrillaga‐Romany, Isabel , Garton, Hugh , Franson, Andrea , Schwartz, Jonathan , Mottl, Sophie L. , Cartaxo, Rodrigo T. , John, Vishal , Messinger, Dana , Judkins, Alexander R. , Wahl, Daniel , Lyssiotis, Costas A. , Alonso, Martha, Cain, Jason E. , Jiang, Li , Mody, Rajen , Kline, Cassie , Mueller, Sabine , Allen, Joshua E. , Franson, Andrea , Lyssiotis, Costas A , Kawakibi, Abed Rahman , Ji, Sunjong , Waszak, Sebastian M. , Mota, Mateus , Deogharkar, Akash , Chung, Chan , Tarapore, Rohinton S. , Ramage, Samuel , Wen, Patrick Yung , Arrillaga‐Romany, Isabel , Jain, Rajan , Qin, Tingting , Peterson, Erik, Sajjakulnukit, Peter , Nava, Daniel de la , Duchatel, Ryan J , Dun, Matthew D , Filbin, Mariella G , Zhao, Lili , Kumar-Sinha, Chandan , Chinnaiyan, Arul , Kurokawa, Ryo , Pratt, Drew , Yadav, Viveka Nand , Grill, Jacques , Resnick, Adam , Nazarian, Javad , Odia, Yazmín , Gardner, Sharon L , Koschmann, Carl

Neuro-Oncology | November 11, 2023 | Volume: 25 | Issue: Supplement_5 | Pages: v272-v272

10.1093/neuonc/noad179.1046 Get It

Abstract H3K27M-mutant diffuse midline glioma (DMG) patients have no proven effective therapies beyond radiation. ONC201, a mitochondrial protease ClpP agonist, has recently demonstrated efficacy in these patients, but the mechanism behind this remains unknown. We assessed clinical outcomes, tumor sequencing, and tissue samples from patients treated in two completed multi-site clinical studies (n=71). Patients treated with ONC201 monotherapy following initial radiation but prior to recurrence (n=35) demonstrated a median overall survival of 21.7 months and a median progression-free survival of 12.2 months. Radiographic response was associated with increased expression of key tricarboxylic acid cycle-related genes in baseline tumor sequencing. Similar survival benefits were observed using in utero electroporation and orthotopic mouse models of H3K27M-DMG (median 107 versus 77 days [p=0.02] and median 97 versus 141 days [p=0.004], respectively). Integrated transcriptomic and metabolomic analysis of ONC201-treated H3K27M-DMG cells revealed downregulation of TCA cycle, glycolysis, and pyruvate metabolism genes, most notably oxoglutarate dehydrogenase (OGDH), and concomitant changes in levels of associated metabolites including ɑ-ketoglutarate (ɑ-KG). Interestingly, L-2-hydroxyglutarate (L-2HG), a known inhibitor of the Jumonji C domain family of histone lysine demethylases, was also increased. This corresponded with increases in repressive H3K27me3 in vitro and in human tumors accompanied by epigenetic downregulation of cell cycle regulation and neuro-glial differentiation genes. Genetic knockdown of OGDH recapitulated ONC201-mediated increases in H3K27me3. In contrast, genetic knockdown of ClpP or lactate dehydrogenase A or overexpression of L-2-hydroxyglutarate dehydrogenase (L-2HGDH), but not D-2HGDH, abrogated ONC201-mediated increases in H3K27me3, demonstrating that ONC201 induces the production of L-2HG in H3K27M-DMG cells leading to increased H3K27me3. Overall, our data demonstrates the efficacy of ONC201 in H3K27M-mutant DMG and supports ONC201 as the first monotherapy to improve outcomes in patients with H3K27M-mutant DMG for whom few therapeutic options currently exist. Mechanistically, ONC201 disrupts integrated metabolic and epigenetic pathways and reverses pathognomonic H3K27me3 reduction.
Diffuse hemispheric glioma with H3-3B G34R mutation: Expanding the spectrum of histone H3 genes in diffuse hemispheric glioma, H3 G34-mutant
Nazem, Amir , Lavezo, Jonathan , Abdullaev, Zied , Aldape, Kenneth , Quezado, Martha , Cimino, Patrick J. , Jenkins, Robert B. , Ida, Cristiane M. , Jenkins, RB , Ida, Cristiane M , Cimino, Patrick J , Pratt, Drew

Journal of Neuropathology & Experimental Neurology | October 25, 2023 | Volume: 83 | Issue: 1 | Pages: 58-60

10.1093/jnen/nlad089 | PMID 37878797 Get It

Clinical Efficacy of ONC201 in H3K27M-Mutant Diffuse Midline Gliomas Is Driven by Disruption of Integrated Metabolic and Epigenetic Pathways
Venneti, Sriram , Kawakibi, Abed Rahman , Ji, Sunjong , Waszak, Sebastian M. , Sweha, Stefan R. , Mota, Mateus , Pun, Matthew , Deogharkar, Akash , Chung, Chan , Tarapore, Rohinton S. , Ramage, Samuel , Chi, Andrew , Wen, Patrick Y. , Arrillaga‐Romany, Isabel , Batchelor, Tracy T. , Butowski, Nicholas , Shonka, Nicole , Hall, Matthew D. , Daghistani, Doured , Beccaria, Kévin , Umemura, Yoshie , Garton, Hugh , Franson, Andrea , Schwartz, Jonathan , Kachman, Maureen , Baum, Heidi , Burant, Charles , Mottl, Sophie L. , Cartaxo, Rodrigo T. , John, Vishal , Messinger, Dana , Peterson, Erik , Ravi, Karthik , Waugh, Alyssa , Walling, Dustin , Ding, Yujie , Xia, Ziyun , Hawes, Debra , Yang, Fusheng , Judkins, Alexander R. , Wahl, Daniel , Lyssiotis, Costas A. , Nava, Daniel de la , Eze, Augustine , Spitzer, Jasper , Schmidt, Susanne V. , Cain, Jason E. , Jiang, Li , Agar, Nathalie Y.R. , Zhao, Lili , Mody, Rajen , Kurokawa, Ryo , Yadav, Viveka Nand , Grill, Jacques , Kline, Cassie , Mueller, Sabine , Nazarian, Javad , Allen, Joshua E. , Odia, Yazmín , Butowski, Nicholas A , Sumrall, Ashley , Shonka, Nicole , Harrison, Rebecca A , de Groot, John , Mehta, Minesh P , Hall, Matthew D , Daghistani, Doured , Cloughesy, Timothy F , Ellingson, Benjamin M , Beccaria, Kevin , Varlet, Pascale , Kim, Michelle M , Umemura, Yoshie , Garton, Hugh , Franson, Andrea , Schwartz, Jonathan , Jain, Rajan , Kachman, Maureen , Baum, Heidi , Burant, Charles F , Mottl, Sophie L , Cartaxo, Rodrigo T , John, Vishal , Messinger, Dana , Qin, Tingting , Peterson, Erik , Sajjakulnukit, Peter , Ravi, Karthik , Waugh, Alyssa , Walling, Dustin , Ding, Yujie , Xia, Ziyun , Schwendeman, Anna , Hawes, Debra , Yang, Fusheng , Judkins, Alexander R , Wahl, Daniel , Lyssiotis, Costas A , de la Nava, Daniel , Alonso, Marta M , Eze, Augustine , Spitzer, Jasper , Schmidt, Susanne V , Duchatel, Ryan J , Dun, Matthew D , Cain, Jason E , Jiang, Li , Stopka, Sylwia A , Baquer, Gerard , Regan, Michael S , Filbin, Mariella G , Agar, Nathalie Y R , Zhao, Lili , Kumar-Sinha, Chandan , Mody, Rajen , Chinnaiyan, Arul , Kurokawa, Ryo , Pratt, Drew , Yadav, Viveka N , Grill, Jacques , Kline, Cassie , Mueller, Sabine , Resnick, Adam , Nazarian, Javad , Allen, Joshua E , Odia, Yazmin , Gardner, Sharon L , Koschmann, Carl , Tarapore, Rohinton S , Ji, Sunjong , Wen, Patrick Yung , Arrillaga‐Romany, Isabel , Sumrall, Ashley , Groot, John de , Mehta, Minesh P. , Cloughesy, Timothy F. , Ellingson, Benjamin M. , Kim, Michelle M. , Jain, Rajan , Stopka, Sylwia A. , Baquer, Gerard , Regan, Michael S. , Koschmann, Carl

Cancer Discovery | August 16, 2023 | Volume: 13 | Issue: 11 | Pages: 2370-2393

10.1158/2159-8290.cd-23-0131 | PMID 37584601 Get It

Abstract Patients with H3K27M-mutant diffuse midline glioma (DMG) have no proven effective therapies. ONC201 has recently demonstrated efficacy in these patients, but the mechanism behind this finding remains unknown. We assessed clinical outcomes, tumor sequencing, and tissue/cerebrospinal fluid (CSF) correlate samples from patients treated in two completed multisite clinical studies. Patients treated with ONC201 following initial radiation but prior to recurrence demonstrated a median overall survival of 21.7 months, whereas those treated after recurrence had a median overall survival of 9.3 months. Radiographic response was associated with increased expression of key tricarboxylic acid cycle–related genes in baseline tumor sequencing. ONC201 treatment increased 2-hydroxyglutarate levels in cultured H3K27M-DMG cells and patient CSF samples. This corresponded with increases in repressive H3K27me3 in vitro and in human tumors accompanied by epigenetic downregulation of cell cycle regulation and neuroglial differentiation genes. Overall, ONC201 demonstrates efficacy in H3K27M-DMG by disrupting integrated metabolic and epigenetic pathways and reversing pathognomonic H3K27me3 reduction. Significance: The clinical, radiographic, and molecular analyses included in this study demonstrate the efficacy of ONC201 in H3K27M-mutant DMG and support ONC201 as the first monotherapy to improve outcomes in H3K27M-mutant DMG beyond radiation. Mechanistically, ONC201 disrupts integrated metabolic and epigenetic pathways and reverses pathognomonic H3K27me3 reduction. This article is featured in Selected Articles from This Issue, p. 2293
Ig V region gene expression in small lymphocytic lymphoma with little or no somatic hypermutation.
Pratt, L F, Rassenti, Laura Z., Larrick, James W. , Robbins, Bruce A., Banks, P. M., Banks, P M, Kipps, Thomas J.

The Journal of Immunology | December 31, 2022 | Volume: 143 | Issue: 2 | Pages: 699-705

10.4049/jimmunol.143.2.699 Get It

Abstract Using the polymerase chain reaction we examined for specific Ig kappa-L chain V region gene (V kappa gene) rearrangement in small lymphocytic non-Hodgkin's lymphomas that express Ig bearing a major kappa-L chain associated cross-reactive Id, designated 17.109. Previously, we identified the 17.109-cross-reactive Id in chronic lymphocytic leukemia as a serologic marker for expression of a highly conserved V kappa gene, designated Humkv325. Using sense-strand oligonucleotides specific for the 5'-end of this Vkappa gene and antisense oligonucleotide specific for a Jkappa region consensus sequence, we could amplify specifically Humkv325 when juxtaposed with Jkappa through Ig gene rearrangement. This allowed us to amplify rearranged Vkappa genes from DNA isolated from minute amounts of lymphoma biopsy material for molecular analyses. Our studies demonstrate that 17.109-reactive SL NHL, with or without associated CLL, rearrange, and presumably express, Humkv325 without substantial somatic diversification. Our data suggest that malignant B cells in SL NHL, in contrast to NHL of follicular center cell origin, may express immunoglobulin variable region genes with little or no somatic hypermutation.
Glioblastoma, IDH-Wildtype Harboring a KIAA1549::BRAF Fusion: Report of a Case With Comprehensive Molecular Profiling
Berry, John F. , Vidrine, Devan W. , Wojcik, Antonina A, Trivedi, Darshan, Quezado, Martha , Abdullaev, Zied , Ketchum, Courtney , Aldape, Kenneth , Jenkins, Robert B. , Aldape, Kenneth , Jenkins, Robert, Ida, Cristiane M , Wojcik, Antonina A., Keen, Joseph, Pratt, Drew , Ida, Cristiane M.

Journal of Neuropathology & Experimental Neurology | August 27, 2022 | Volume: 81 | Issue: 12 | Pages: 1026-1028

10.1093/jnen/nlac076 | PMID 36029520 Get It

NCCN Guidelines® Insights: Lung Cancer Screening, Version 1.2022
Wood, Douglas E. , Kazerooni, Ella A. , Eapen, Georgie A. , Ettinger, David S. , Ferguson, J. Scott , Hou, Lifang , Kadaria, Dipen, Klippenstein, Donald, Lackner, Rudy P., Lennes, Inga T. , Leung, Ann N. , Mazzone, Peter J. , Merritt, Robert E. , Midthun, David E. , Onaitis, Mark W. , Pipavath, Sudhakar, Pratt, Christie, Puri, Varun , Raz, Dan J. , Reddy, Chakravarthy, Reid, Mary E. , Sandler, Kim L. , Tanoue, Lynn, Tong, Betty C. , Wei, Benjamin , Westover, Kenneth D. , Yang, Stephen C. , McCullough, Beth, Hughes, Miranda, Hou, Lifang , Leung, Ann , Aberle, Denise R. , Berman, Abigail T. , Brown, Lisa Marie , Kumar, Rohit , Leard, Lorriana E. , Pratt, Christie, Sands, Jacob , Schabath, Matthew B. , Studts, Jamie L. , Travis, William D.

Journal of the National Comprehensive Cancer Network | July 13, 2022 | Volume: 20 | Issue: 7 | Pages: 754-764

10.6004/jnccn.2022.0036 | PMID 35830884 Get It

The NCCN Guidelines for Lung Cancer Screening recommend criteria for selecting individuals for screening and provide recommendations for evaluation and follow-up of lung nodules found during initial and subsequent screening. These NCCN Guidelines Insights focus on recent updates to the NCCN Guidelines for Lung Cancer Screening.
Designing the Microbes and Social Equity Symposium: A Novel Interdisciplinary Virtual Research Conference Based on Achieving Group-Directed Outputs
Ishaq, Suzanne L. , Wissel, Emily , Grieneisen, Laura , Eggleston, Erin M. , Mhuireach, Gwynne , Friedman, Michael , Lichtenwalner, Anne , Machuca, Jessica Otero , Darling, Katherine Weatherford, Pearson, Amber L. , Wertheim, Frank S., Hodges, Leslie , Young, Sabrina K. , Nielsen, Charlene C. , MacRae, Jean D. , Myers, Elise M., Kozik, Ariangela J. , Tussing-Humphreys, Lisa Marie, Trujillo, Mónica , Daniel, Gaea , Donovan, Sharon M. , Arshad, Myra, Balkan, Joe, Hosler, Sarah, Wolf, Patricia G. , Johnson, Abigail J. , Kozyrskyj, Anita Luba , Tussing-Humphreys, Lisa Marie , Kramer, Michael R.

Challenges | July 12, 2022 | Volume: 13 | Issue: 2 | Pages: 30

10.3390/challe13020030 Get It

The Microbes and Social Equity working group was formed in 2020 to foster conversations on research, education, and policy related to how microorganisms connect to personal, societal, and environmental health, and to provide space and guidance for action. In 2021, we designed our first virtual symposium to convene researchers already working in these areas for more guided discussions. The symposium organizing team had never planned a research event of this scale or style, and this perspective piece details that process and our reflections. The goals were to (1) convene interdisciplinary audiences around topics involving microbiomes and health, (2) stimulate conversation around a selected list of paramount research topics, and (3) leverage the disciplinary and professional diversity of the group to create meaningful agendas and actionable items for attendees to continue to engage with after the meeting. Sixteen co-written documents were created during the symposium which contained ideas and resources, or identified barriers and solutions to creating equity in ways which would promote beneficial microbial interactions. The most remarked-upon aspect was the working time in the breakout rooms built into the schedule. MSE members agreed that in future symposia, providing interactive workshops, training, or collaborative working time would provide useful content, a novel conference activity, and allow attendees to accomplish other work-oriented goals simultaneously.
Impact of Low Dose Maltodextrin/Citrulline Loading on the Severity and Duration of Stress Induced Hyperglycemia in Cardiac Surgery
Espinosa, Jairo, Baxter, Jacob , Jose, Joslyn, Khalil, Sarah I. , Dash, Alok, Pratt, Jerry W.

No container title available | May 31, 2022 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-1680450/v1 Get It

Abstract INTRODUCTION: Postoperative stress induced insulin resistance, and the resulting glycemic variability, is clearly associated with complication rates in cardiac surgery. Despite this, there is a paucity of data regarding the duration of stress induced hyperglycemia in cardiac surgery as well as the impact of specific strategies for carbohydrate loading in cardiac surgery patients. Prior work in colorectal and bariatric surgery has shown a significant reduction in glycemic events with the use of a low dose maltodextrin and citrulline loading strategy, but there is no data that the commonly recommended 50 gram supplements provides any impact on stress induced postoperative hyperglycemia. The aim of this study was to compare standard of care (SOC group) versus a three dose, 25 gram dose carbohydrate loading strategy (CL group) on the duration and severity of postoperative glycemic variability in both diabetic and non-diabetic cardiac surgery patients.METHODS: We compared CABG/AVR/MVR retrospective patients who received standard of care (SOC) to a prospective set of patients who were carbohydrate loaded (CL) with 3 preoperative doses of 25g maltodextrin/3g citrulline (G.E.D.TM, SOF Health, LLC).RESULTS: 152 patients total were included (SOC n=80, CL n= 72). 66 patients were diabetic. In both non-diabetic and diabetic patient populations, there was a statistically significant reduction in glycemic variability in G.E.D. groups for non- diabetics (27% reduction) and diabetics (40% reduction). The glycemic variability on POD 2 was not statistically different between treatment groups in non-diabetics (G.E.D. 25.2% vs SOC 24.7%) but approached significance in diabetics (G.E.D. 24.7% vs SOC 32.9%e). CONCLUSION: These are the first data demonstrating the reduction in post operative stress induced glycemic variability in cardiac surgery using a low dose carbohydrate loading regimen which includes the amino acid citrulline. The impact of surgical stress on glycemic variability appears to resolve by POD#2 in non-diabetics but may persist longer in diabetic patients. These data represent the first information regarding the benefits of a specific strategy for carbohydrate loading to reduces the stress induced component of post operative hyperglycemia in cardiac surgery.