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2819 citation(s) found for "Yu, Liu".

Soft matrix is a natural stimulator for cellular invasiveness
Gu, Zhizhan , Liu, Fei , Tonkova, Elina A., Lee, Soo Young , Tschumperlin, Daniel J. , Brenner, Michael B.

Molecular Biology of the Cell | December 12, 2013 | Volume: 25 | Issue: 4 | Pages: 457-469

10.1091/mbc.e13-05-0260 | PMID 24336521 Get It

Directional mesenchymal cell invasion in vivo is understood to be a stimulated event and to be regulated by cytokines, chemokines, and types of extracellular matrix (ECM). Instead, by focusing on the cellular response to ECM stiffness, we found that soft ECM (low stiffness) itself is sufficient to prevent stable cell-to-cell adherens junction formation, up-regulate matrix metalloproteinase (MMP) secretion, promote MMP activity, and induce invadosome-like protrusion (ILP) formation. Consistently, similar ILP formation was also detected in a three-dimensional directional invasion assay in soft matrix. Primary human fibroblasts spontaneously form ILPs in a very narrow range of ECM stiffness (0.1–0.4 kPa), and such ILP formation is Src family kinase dependent. In contrast, spontaneous ILP formation in malignant cancer cells and fibrosarcoma cells occurs across a much wider range of ECM stiffness, and these tumor cell ILPs are also more prominent at lower stiffness. These findings suggest that ECM softness is a natural stimulator for cellular invasiveness.
Ablation of Nectin4 Binding Compromises CD46 Usage by a Hybrid Vesicular Stomatitis Virus/Measles Virus
Liu, Yu-Ping, Russell, Samuel P., Ayala-Bretón, Camilo, Russell, Stephen J. , Peng, Kah-Whye , Russell, Stephen J

Journal of Virology | December 12, 2013 | Volume: 88 | Issue: 4 | Pages: 2195-2204

10.1128/jvi.02628-13 | PMID 24335299 Get It

ABSTRACT Measles virus (MV) immunosuppression is due to infection of SLAM-positive immune cells, whereas respiratory shedding and virus transmission are due to infection of nectin4-positive airway epithelial cells. The vaccine lineage MV strain Edmonston (MV-Edm) acquired an additional tropism for CD46 which is the basis of its oncolytic specificity. VSVFH is a vesicular stomatitis virus (VSV) encoding the MV-Edm F and H entry proteins in place of G. The virus spreads faster than MV-Edm and is highly fusogenic and a potent oncolytic. To determine whether ablating nectin4 tropism from VSVFH might prevent shedding, increasing its safety profile as an oncolytic, or might have any effect on CD46 binding, we generated VSVFH viruses with H mutations that disrupt attachment to SLAM and/or nectin4. Disruption of nectin4 binding reduced release of VSVFH from the basolateral side of differentiated airway epithelia composed of Calu-3 cells. However, because nectin4 and CD46 have substantially overlapping receptor binding surfaces on H, disruption of nectin4 binding compromised CD46 binding and greatly diminished the oncolytic potency of these viruses on human cancer cells. Thus, our results support continued preclinical development of VSVFH without ablation of nectin4 binding.
TOWARDS PATHWAY CURATION THROUGH LITERATURE MINING – A CASE STUDY USING PHARMGKB
Ravikumar, K. E., Wagholikar, Kavishwar B. , Liu, Hongfang

Biocomputing 2014 | November 18, 2013 | Volume: No volume available | Issue: No issue available | Pages: 352-363

10.1142/9789814583220_0034 Get It

H alomonas sulfidaeris ‐dominated microbial community inhabits a 1.8 km‐deep subsurface C ambria
Dong, Yiran , Kumar, Charu G., Kim, Pan‐Jun , Miller, P., Price, Nathan D. , Flynn, Theodore M. , Sanford, Robert A. , Krapac, Ivan G., Locke, Randall A. , Hong, Pei‐Ying , Tamaki, Hideyuki , Mackie, Roderick I. , Hernandez, Alvaro G. , Wright, Chris , Mikel, Mark A. , Walker, Jared, Sivaguru, Mayandi , Fried, Glenn , Yannarell, Anthony C. , Fouke, Bruce W. , Chia, Nicholas , Cann, Isaac , Liu, Wen‐Tso , Price, Nathan D

Environmental Microbiology | November 14, 2013 | Volume: 16 | Issue: 6 | Pages: 1695-1708

10.1111/1462-2920.12325 | PMID 24238218 Get It

Summary A low‐diversity microbial community, dominated by the γ ‐proteobacterium H alomonas sulfidaeris , was detected in samples of warm saline formation porewater collected from the C ambrian Mt. S imon S andstone in the I llinois B asin of the N orth A merican M idcontinent (1.8 km/5872 ft burial depth, 50° C , pH 8, 181 bars pressure). These highly porous and permeable quartz arenite sandstones are directly analogous to reservoirs around the world targeted for large‐scale hydrocarbon extraction, as well as subsurface gas and carbon storage. A new downhole low‐contamination subsurface sampling probe was used to collect in situ formation water samples for microbial environmental metagenomic analyses. Multiple lines of evidence suggest that this H . sulfidaeris ‐dominated subsurface microbial community is indigenous and not derived from drilling mud microbial contamination. Data to support this includes V 1‐ V 3 pyrosequencing of formation water and drilling mud, as well as comparison with previously published microbial analyses of drilling muds in other sites. Metabolic pathway reconstruction, constrained by the geology, geochemistry and present‐day environmental conditions of the Mt . S imon S andstone, implies that H . sulfidaeris ‐dominated subsurface microbial community may utilize iron and nitrogen metabolisms and extensively recycle indigenous nutrients and substrates. The presence of aromatic compound metabolic pathways suggests this microbial community can readily adapt to and survive subsurface hydrocarbon migration.
Targeted Disruption of G0/G1 Switch Gene 2 Enhances Adipose Lipolysis, Alters Hepatic Energy Balance, and Alleviates High-Fat Diet–Induced Liver Steatosis
Zhang, Xiaodong , Xie, Xitao, Heckmann, Bradlee L. , Saarinen, Alicia M., Czyzyk, Traci A. , Liu, Jun , Liu, Jun Qi , Liu, Jun , Czyzyk, Traci A

Diabetes | November 6, 2013 | Volume: 63 | Issue: 3 | Pages: 934-946

10.2337/db13-1422 | PMID 24194501 Get It

Recent biochemical and cell-based studies identified G0/G1 switch gene 2 (G0S2) as an inhibitor of adipose triglyceride lipase (ATGL), a key mediator of intracellular triacylglycerol (TG) mobilization. Here, we show that upon fasting, G0S2 protein expression exhibits an increase in liver and a decrease in adipose tissue. Global knockout of G0S2 in mice enhanced adipose lipolysis and attenuated gain of body weight and adiposity. More strikingly, G0S2 knockout mice displayed a drastic decrease in hepatic TG content and were resistant to high-fat diet (HFD)-induced liver steatosis, both of which were reproduced by liver-specific G0S2 knockdown. Mice with hepatic G0S2 knockdown also showed increased ketogenesis, accelerated gluconeogenesis, and decelerated glycogenolysis. Conversely, overexpression of G0S2 inhibited fatty acid oxidation in mouse primary hepatocytes and caused sustained steatosis in liver accompanied by deficient TG clearance during the fasting-refeeding transition. In response to HFD, there was a profound increase in hepatic G0S2 expression in the fed state. Global and hepatic ablation of G0S2 both led to improved insulin sensitivity in HFD-fed mice. Our findings implicate a physiological role for G0S2 in the control of adaptive energy response to fasting and as a contributor to obesity-associated liver steatosis.
DT‐01–06: Baseline FDG‐PET and volumetric MRI predicts Alzheimer's disease conversion from mild cognitive impairment: An ADNI study
Stonnington, Cynthia M. , Ayutyanont, Napatkamon , Reschke, Cole, Thyyagura, Pradeep, Protas, Hillary , Roontiva, Auttawut, Parks, Stephanie, Bauer, Robert, Lee, Wendy , Jagust, William, Foster, Norman L. , Weiner, Michael W. , Fleisher, Adam , Reiman, Eric M. , Chen, Kewei , Liu, Xiaofen , Koeppe, Robert A.

Alzheimer's & Dementia | October 9, 2013 | Volume: 9 | Issue: 4S_Part_21 | Pages: No page available

10.1016/j.jalz.2013.08.007 Get It

P4–034: Viewing neurodegeneration beyond the tangle: The role of RNA binding proteins in Alzheimer's disease
Vanderwyede, Tara, Liu‐Yesucevitz, Liqun, Petrucelli, Leonard , Duff, Karen , Wolozin, Benjamin , Dedeoglu, Alpaslan

Alzheimer's & Dementia | October 9, 2013 | Volume: 9 | Issue: 4S_Part_18 | Pages: No page available

10.1016/j.jalz.2013.05.1422 Get It