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2819 citation(s) found for "R, Liu".

MENDA: a comprehensive curated resource of metabolic characterization in depression
Pu, Juncai , Yu, Yue , Liu, Yiyun , Tian, Lu , Gui, Siwen , Zhong, Xiaogang , Fan, Chu , Song, Xuemian, Liu, Lanxiang , Yang, Lining , Zheng, Peng , Chen, Jianjun , Cheng, Ke , Zhou, Chanjuan, Wang, Haiyang , Xie, Peng , Xu, Shaohua

Briefings in Bioinformatics | April 18, 2019 | Volume: 21 | Issue: 4 | Pages: 1455-1464

10.1093/bib/bbz055 | PMID 31157825 Get It

Abstract Depression is a seriously disabling psychiatric disorder with a significant burden of disease. Metabolic abnormalities have been widely reported in depressed patients and animal models. However, there are few systematic efforts that integrate meaningful biological insights from these studies. Herein, available metabolic knowledge in the context of depression was integrated to provide a systematic and panoramic view of metabolic characterization. After screening more than 10 000 citations from five electronic literature databases and five metabolomics databases, we manually curated 5675 metabolite entries from 464 studies, including human, rat, mouse and non-human primate, to develop a new metabolite-disease association database, called MENDA (http://menda.cqmu.edu.cn:8080/index.php). The standardized data extraction process was used for data collection, a multi-faceted annotation scheme was developed, and a user-friendly search engine and web interface were integrated for database access. To facilitate data analysis and interpretation based on MENDA, we also proposed a systematic analytical framework, including data integration and biological function analysis. Case studies were provided that identified the consistently altered metabolites using the vote-counting method, and that captured the underlying molecular mechanism using pathway and network analyses. Collectively, we provided a comprehensive curation of metabolic characterization in depression. Our model of a specific psychiatry disorder may be replicated to study other complex diseases.
Progression Risk Stratification of Asymptomatic Waldenström Macroglobulinemia
Bustoros, Mark , Sklavenitis‐Pistofidis, Romanos , Kapoor, Prashant , Kastritis, Efstathios , Zanwar, Saurabh , Fell, Geoffrey, Abeykoon, Jithma P. , Hornburg, Kalvis , Neuse, Carl Jannes , Liu, David , Soiffer, Jenny , Gavriatopoulou, Maria , Boehner, Cody J. , Cappuccio, Joseph M. , Dumke, Henry, Reyes, Kaitlen, Soiffer, Robert J. , Kyle, Robert A. , Ansell, Stephen M. , Trippa, Lorenzo , Ghobrial, Irene M. , Kastritis, Efstathios , Ghobrial, Irene M , Sklavenitis-Pistofidis, Romanos , Liu, Chia‐Jen , Fell, Geoffrey G. , Marinac, Catherine R. , Treon, Steven P. , Castillo, Jorge J. , Dimopoulos, Meletios Α.

Journal of Clinical Oncology | April 16, 2019 | Volume: 37 | Issue: 16 | Pages: 1403-1411

10.1200/jco.19.00394 | PMID 30990729 Get It

BACKGROUND Waldenström macroglobulinemia (WM) is preceded by asymptomatic WM (AWM), for which the risk of progression to overt disease is not well defined. METHODS We studied 439 patients with AWM, who were diagnosed and observed at Dana-Farber Cancer Institute between 1992 and 2014. RESULTS During the 23-year study period, with a median follow-up of 7.8 years, 317 patients progressed to symptomatic WM (72%). Immunoglobulin M 4,500 mg/dL or greater, bone marrow lymphoplasmacytic infiltration 70% or greater, β2-microglobulin 4.0 mg/dL or greater, and albumin 3.5 g/dL or less were all identified as independent predictors of disease progression. To assess progression risk in patients with AWM, we trained and cross-validated a proportional hazards model using bone marrow infiltration, immunoglobulin M, albumin, and beta-2 microglobulin values as continuous measures. The model divided the cohort into three distinct risk groups: a high-risk group with a median time to progression (TTP) of 1.8 years, an intermediate-risk group with a median TTP of 4.8 years, and a low-risk group with a median TTP of 9.3 years. We validated this model in two external cohorts, demonstrating robustness and generalizability. For clinical applicability, we made the model available as a Web page application ( www.awmrisk.com ). By combining two cohorts, we were powered to identify wild type MYD88 as an independent predictor of progression (hazard ratio, 2.7). CONCLUSION This classification system is positioned to inform patient monitoring and care and, for the first time to our knowledge, to identify patients with high-risk AWM who may need closer follow-up or benefit from early intervention.
Faculty Opinions recommendation of Machine learning in medicine.
Liu, Hongfang

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature | April 16, 2019 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.3410/f.735447402.793558695 Get It

Sacrificial Bioprinting of a Mammary Ductal Carcinoma Model
Duchamp, Margaux , Liu, Tingting , Genderen, Anne Metje van , Kappings, Vanessa, Öklü, Rahmi , Ellisen, Leif W. , Oklu, Rahmi , Zhang, Yu Shrike

Biotechnology Journal | April 9, 2019 | Volume: 14 | Issue: 10 | Pages: No page available

10.1002/biot.201700703 | PMID 30963705 Get It

Cancer tissue engineering has remained challenging due to the limitations of the conventional biofabrication techniques to model the complex tumor microenvironment. Here, the utilization of a sacrificial bioprinting strategy is reported to generate the biomimetic mammary duct‐like structure within a hydrogel matrix, which is further populated with breast cancer cells, to model the genesis of ductal carcinoma and its subsequent outward invasion. This bioprinted mammary ductal carcinoma model provides a proof‐of‐concept demonstration of the value of using the sacrificial bioprinting technique for engineering biologically relevant cancer models, which may be possibly extended to other cancer types where duct‐like structures are involved.
Microglial proliferation and monocyte infiltration contribute to microgliosis following status epilepticus
Feng, Lijie , Murugan, Madhuvika , Bosco, Dale B. , Peng, Jiyun , Ta, Lauren E., Richardson, Jason R. , Shen, Yuxian , Wu, Long‐Jun , Wang, Hai‐Long , Wu, Long-Jun , Liu, Yong , Worrell, Gregory A. , Wang, Hai‐Long

Glia | April 6, 2019 | Volume: 67 | Issue: 8 | Pages: 1434-1448

10.1002/glia.23616 | PMID 31179602 Get It

AbstractMicroglial activation has been recognized as a major contributor to inflammation of the epileptic brain. Seizures are commonly accompanied by remarkable microgliosis and loss of neurons. In this study, we utilize the CX3CR1GFP/+ CCR2RFP/+ genetic mouse model, in which CX3CR1+ resident microglia and CCR2+ monocytes are labeled with GFP and RFP, respectively. Using a combination of time‐lapse two‐photon imaging and whole‐cell patch clamp recording, we determined the distinct morphological, dynamic, and electrophysiological characteristics of infiltrated monocytes and resident microglia, and the evolution of their behavior at different time points following kainic acid‐induced seizures. Seizure activated microglia presented enlarged somas with less ramified processes, whereas, infiltrated monocytes were smaller, highly motile cells that lacked processes. Moreover, resident microglia, but not infiltrated monocytes, proliferate locally in the hippocampus after seizure. Microglial proliferation was dependent on the colony‐stimulating factor 1 receptor (CSF‐1R) pathway. Pharmacological inhibition of CSF‐1R reduced seizure‐induced microglial proliferation, which correlated with attenuation of neuronal death without altering acute seizure behaviors. Taken together, we demonstrated that proliferation of activated resident microglia contributes to neuronal death in the hippocampus via CSF‐1R after status epilepticus, providing potential therapeutic targets for neuroprotection in epilepsy.
Ixazomib maintenance therapy in newly diagnosed multiple myeloma: An integrated analysis of four phase I/II studies
Laubach, Jacob P. , Gutierrez, Maria Asunción Echeveste, Grząśko, Norbert , Miguel, Jesús F. San , Kumar, Shaji , Labotka, Richard, Lu, Vickie, Berg, Deborah, Byrne, Catriona , Teng, Zhaoyang , Liu, Guohui , Velde, Helgi van de , Richardson, Paul G. , Dimopoulos, Meletios A , San-Miguel, Jesus , Dimopoulos, Meletios Α. , Hofmeister, Craig C. , Richardson, Paul Gerard Guy

European Journal of Haematology | April 3, 2019 | Volume: 102 | Issue: 6 | Pages: 494-503

10.1111/ejh.13231 | PMID 30943323 Get It

AbstractObjectivesTo evaluate the safety and efficacy of maintenance therapy with the oral proteasome inhibitor ixazomib in patients with newly diagnosed multiple myeloma (NDMM) not undergoing transplantation.MethodsData were pooled from four NDMM phase I/II studies; patients received induction therapy with once‐ or twice‐weekly ixazomib plus lenalidomide‐dexamethasone (IRd), melphalan‐prednisone (IMP), or cyclophosphamide‐dexamethasone (ICd), followed by single‐agent ixazomib maintenance, given at the last tolerated dose during induction, until disease progression, death, or unacceptable toxicity.ResultsA total of 121 patients achieved stable disease or better after induction (weekly IRd, n = 25; twice‐weekly IRd, n = 18; weekly or twice‐weekly IMP, n = 35; weekly ICd, n = 43) and received ≥ 1 dose of ixazomib maintenance. Grade ≥ 3 drug‐related adverse events occurred in 24% of patients during maintenance; each event was reported in ≤2% of patients. Rates of complete response were 22% after induction and 35% after maintenance. A total of 28 patients (23%) improved their response during maintenance.ConclusionsIxazomib maintenance following ixazomib‐based induction is associated with deepening of responses and a positive safety profile with no cumulative toxicity in patients with NDMM not undergoing transplantation, suggesting that ixazomib is feasible for long‐term administration. Phase III investigation of ixazomib maintenance is ongoing.
5-HT3 Antagonist Ondansetron Increases apoE Secretion by Modulating the LXR-ABCA1 Pathway
Shinohara, Motoko, Shinohara, Mitsuru , Liu, Chia‐Chen , Kanekiyo, Takahisa , Bu, Guojun , Liu, Chia-Chen , Bu, Guojun , Zhao, Jing , Fu, Yuan

International Journal of Molecular Sciences | March 25, 2019 | Volume: 20 | Issue: 6 | Pages: 1488

10.3390/ijms20061488 | PMID 30934555 Get It

Apolipoprotein E (apoE) is linked to the risk for Alzheimer’s disease (AD) and thus has been suggested to be an important therapeutic target. In our drug screening effort, we identified Ondansetron (OS), an FDA-approved 5-HT3 antagonist, as an apoE-modulating drug. OS at low micromolar concentrations significantly increased apoE secretion from immortalized astrocytes and primary astrocytes derived from apoE3 and apoE4-targeted replacement mice without generating cellular toxicity. Other 5-HT3 antagonists also had similar effects as OS, though their effects were milder and required higher concentrations. Antagonists for other 5-HT receptors did not increase apoE secretion. OS also increased mRNA and protein levels of the ATB-binding cassette protein A1 (ABCA1), which is involved in lipidation and secretion of apoE. Accordingly, OS increased high molecular weight apoE. Moreover, the liver X receptor (LXR) and ABCA1 antagonists blocked the OS-induced increase of apoE secretion, indicating that the LXR-ABCA1 pathway is involved in the OS-mediated facilitation of apoE secretion from astrocytes. The effects of OS on apoE and ABCA1 were also observed in human astrocytes derived from induced pluripotent stem cells (iPSC) carrying the APOE ε3/ε3 and APOE ε4/ε4 genotypes. Oral administration of OS at clinically-relevant doses affected apoE levels in the liver, though the effects in the brain were not observed. Collectively, though further studies are needed to probe its effects in vivo, OS could be a potential therapeutic drug for AD by modulating poE metabolism through the LXR-ABCA1 pathway.
Central Roles of OX40L–OX40 Interaction in the Induction and Progression of Human T Cell–Driven Acute Graft-versus-Host Disease
Tripathi, Trivendra , Yin, Wenjie , Xue, Yaming, Zurawski, Sandra , Fujita, Haruyuki, Hanabuchi, Shino , Oh, SangKon, Joo, HyeMee , Yin, Wenjie , Liu, Yong-Jun

ImmunoHorizons | March 21, 2019 | Volume: 3 | Issue: 3 | Pages: 110-120

10.4049/immunohorizons.1900001 | PMID 31240276 Get It

Abstract Graft-versus-host disease (GVHD) is one of the major obstacles for the success of allogeneic hematopoietic stem cell transplantation. In this article, we report that the interaction between OX40L and OX40 is of critical importance for both induction and progression of acute GVHD (aGVHD) driven by human T cells. Anti-human OX40L mAb (hOX40L) treatment could thus effectively reduce the disease severity in a xenogeneic-aGVHD model in both preventative and therapeutic modes. Mechanistically, blocking OX40L–OX40 interaction with an anti-hOX40L reduces infiltration of human T cells in target organs, including liver, gut, lung, and skin. It also decreases IL-21– and TNF-producing T cell responses while promoting regulatory T cell responses without compromising the cytolytic activity of CD8+ T cells. Single blockade of hOX40L was thus more effective than dual blockade of IL-21 and TNF in reducing the severity of aGVHD as well as mortality. Data from this study indicate that OX40L–OX40 interactions play a central role in the pathogenesis of aGVHD induced by human T cells. Therapeutic strategies that can efficiently interrupt OX40L–OX40 interaction in patients might have potential to provide patients with an improved clinical benefit.
AUGMENT: A Phase III Study of Lenalidomide Plus Rituximab Versus Placebo Plus Rituximab in Relapsed or Refractory Indolent Lymphoma
Leonard, John P. , Izutsu, Koji , Fowler, Nathan , Hong, Xiaonan, Zhu, Jun , Zhang, Huilai , Offner, Fritz , Scheliga, Adriana , Nowakowski, Grzegorz S. , Pinto, Antonio , Fogliatto, Laura Maria , Moreira, Cláudia, Cabeçadas, José , Kalambakas, Stacey, Fustier, Pierre , Wu, Chengqing , Investigators, for the AUGMENT Trial, Izutsu, Koji , Trněný, Marek , Re, Francesca, Scheinberg, Phillip , Flinn, Ian W. , Liu, David , Gribben, John G. , Investigators, for the AUGMENT Trial, Pinto, Antonio

Journal of Clinical Oncology | March 21, 2019 | Volume: 37 | Issue: 14 | Pages: 1188-1199

10.1200/jco.19.00010 | PMID 30897038 Get It

PURPOSEPatients with indolent non-Hodgkin lymphoma typically respond well to first-line immunochemotherapy. At relapse, single-agent rituximab is commonly administered. Data suggest the immunomodulatory agent lenalidomide could increase the activity of rituximab.METHODSA phase III, multicenter, randomized trial of lenalidomide plus rituximab versus placebo plus rituximab was conducted in patients with relapsed and/or refractory follicular or marginal zone lymphoma. Patients received lenalidomide or placebo for 12 cycles plus rituximab once per week for 4 weeks in cycle 1 and day 1 of cycles 2 through 5. The primary end point was progression-free survival per independent radiology review.RESULTSA total of 358 patients were randomly assigned to lenalidomide plus rituximab (n = 178) or placebo plus rituximab (n = 180). Infections (63% v 49%), neutropenia (58% v 23%), and cutaneous reactions (32% v 12%) were more common with lenalidomide plus rituximab. Grade 3 or 4 neutropenia (50% v 13%) and leukopenia (7% v 2%) were higher with lenalidomide plus rituximab; no other grade 3 or 4 adverse event differed by 5% or more between groups. Progression-free survival was significantly improved for lenalidomide plus rituximab versus placebo plus rituximab, with a hazard ratio of 0.46 (95% CI, 0.34 to 0.62; P < .001) and median duration of 39.4 months (95% CI, 22.9 months to not reached) versus 14.1 months (95% CI, 11.4 to 16.7 months), respectively.CONCLUSIONLenalidomide improved efficacy of rituximab in patients with recurrent indolent lymphoma, with an acceptable safety profile.
Influence of Multimorbidity on Burden and Appropriateness of Implantable Cardioverter‐Defibrillator Therapies
Hajduk, Alexandra M. , Gurwitz, Jerry H. , Tabada, Grace H., Masoudi, Frederick A. , Magid, David J. , Greenlee, Robert T. , Sung, Sue Hee, Liu, Taylor I. , Smith, David H. , Fiocchi, Frances, Gill, Thomas M. , Gupta, Nigel, Peterson, Pamela N., Schuger, Claudio , Vidaillet, Humberto, Hammill, Stephen C., Allore, Heather , Go, Alan S. , Gill, Thomas M , Cassidy‐Bushrow, Andrea E. , Liu, Taylor , Reynolds, Kristi , Goldberg, Robert Joel , Peterson, Pamela N.

Journal of the American Geriatrics Society | March 20, 2019 | Volume: 67 | Issue: 7 | Pages: 1370-1378

10.1111/jgs.15839 | PMID 30892695 Get It

OBJECTIVE To determine whether burden of multiple chronic conditions (MCCs) influences the risk of receiving inappropriate vs appropriate device therapies. DESIGN Retrospective cohort study. SETTING Seven US healthcare delivery systems. PARTICIPANTS Adults with left ventricular systolic dysfunction receiving an implantable cardioverter‐defibrillator (ICD) for primary prevention. MEASUREMENTS Data on 24 comorbid conditions were captured from electronic health records and categorized into quartiles of comorbidity burden (0‐3, 4‐5, 6‐7 and 8‐16). Incidence of ICD therapies (shock and antitachycardia pacing [ATP] therapies), including appropriateness, was collected for 3 years after implantation. Outcomes included time to first ICD therapy, total ICD therapy burden, and risk of inappropriate vs appropriate ICD therapy. RESULTS Among 2235 patients (mean age = 69 ± 11 years, 75% men), the median number of comorbidities was 6 (interquartile range = 4‐8), with 98% having at least two comorbidities. During a mean 2.2 years of follow‐up, 18.3% of patients experienced at least one appropriate therapy and 9.9% experienced at least one inappropriate therapy. Higher comorbidity burden was associated with an increased risk of first inappropriate therapy (adjusted hazard ratio [HR] = 1.94 [95% confidence interval {CI} = 1.14‐3.31] for 4‐5 comorbidities; HR = 2.25 [95% CI = 1.25‐4.05] for 6‐7 comorbidities; and HR = 2.91 [95% CI = 1.54‐5.50] for 8‐16 comorbidities). Participants with 8‐16 comorbidities had a higher total burden of ICD therapy (adjusted relative risk [RR] = 2.12 [95% CI = 1.43‐3.16]), a higher burden of inappropriate therapy (RR = 3.39 [95% CI = 1.67‐6.86]), and a higher risk of receiving inappropriate vs appropriate therapy (RR = 1.74 [95% CI = 1.07‐2.82]). Comorbidity burden was not significantly associated with receipt of appropriate ICD therapies. Patterns were similar when separately examining shock or ATP therapies. CONCLUSIONS In primary prevention ICD recipients, MCC burden was independently associated with an increased risk of inappropriate but not appropriate device therapies. Comorbidity burden should be considered when engaging patients in shared decision making about ICD implantation.