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1314 citation(s) found for "Kyle, R".

Performance of the multi-target hepatocellular carcinoma blood test: Design and rationale of the ALTUS study
John, Binu V. , Camardo, Mark, Elias, Paul Z. , Kielar‐Grevstad, Elle, Rego, Seema P., Parikh, Neehar D. , Roberts, Lewis R. , Silva, Alvin C. , Yang, Ju Dong , Elias, Paul Z , Roberts, Lewis R , John, Binu V , Parikh, Neehar D , Porter, Kyle M. , Singal, Amit G., Yang, Ju Dong , Limburg, Paul J.

Hepatology Communications | October 7, 2025 | Volume: 9 | Issue: 11 | Pages: No page available

10.1097/hc9.0000000000000800 | PMID 41056497 Get It

Background: Hepatocellular carcinoma (HCC) is a leading cause of cancer-related death in the United States and worldwide. HCC screening among patients at elevated risk is associated with improved early detection and overall survival, but current ultrasound-based screening strategies are challenged by low adherence and suboptimal sensitivity. Blood-based screening tests have the potential to enhance adherence and improve early-stage HCC detection if they can demonstrate favorable performance compared with ultrasound-based screening. Here we present the design and rationale for ALTUS (A lternative to Ultrasound), a prospective, longitudinal, multicenter study in the United States to investigate the performance of the multi-target HCC blood test (mt-HBT) for the detection of HCC in a screening population. Methods: Adults with liver cirrhosis or chronic hepatitis B infection will be enrolled to undergo standard-of-care screening imaging and concurrent blood collection for the mt-HBT. All participants will undergo contrast-enhanced CT or MRI imaging with central radiology LI-RADS assessment as the reference method to determine HCC status. Participants without an identified malignancy will undergo a second screening visit and blood collection, and longitudinal clinical and imaging data will be collected up to 18 months from enrollment. The primary study objectives are to demonstrate that the mt-HBT is non-inferior to ultrasound for early-stage HCC sensitivity and to assess mt-HBT HCC specificity. The secondary objective is to assess mt-HBT overall sensitivity. Results: ALTUS is in progress with readout of the primary analysis expected in 2025. Conclusions: This prospective head-to-head comparison of the mt-HBT versus ultrasound will provide novel data regarding the performance and utility of the mt-HBT for HCC screening.
Implementing integrated genomic risk assessments for breast cancer: lessons learned from the Electronic Medical Records and Genomics study
Liu, Cong , Morse, Jennifer, Linder, Jodell E. , Antoniou, Antonis C. , Carver, Tim , Cortopassi, Josh , Peterson, Josh F. , Ta, Casey , Hoell, Christin , Prows, Cynthia A. , Miller, Emily , Perez, Emma , Jarvik, Gail P, Odgis, Jacqueline A. , Bonini, Katherine E. , McGuffin, Kyle, Maradik, Mary, Limdi, Nita, Marathe, Priya , Suckiel, Sabrina A. , Aguilar, Sienna , Lewis, Toni J., Wei, Wei‐Qi, Freimuth, Robert R, Håkonarson, Håkon , Wiesner, Georgia L. , Jarvik, Gail P. , Carver, Tim , Ta, Casey N , Hoell, Christin , Bland, Sarah T , Kottyan, Leah C , Luo, Yuan , Weng, Chunhua , Hakonarson, Hakon , Jarvik, Gail P , Liu, Cong , Peterson, Josh F , Crew, Katherine D. , Morse, Jennifer, Kenny, Eimear E , Bland, Harris T. , Mittendorf, Kathleen F. , McGuffin, Kyle, Kottyan, Leah C. , Abul‐Husn, Noura S. , Luo, Yuan , Freimuth, Robert R. , Weng, Chunhua , Chung, Wendy K.

JAMIA Open | October 4, 2025 | Volume: 8 | Issue: 5 | Pages: No page available

10.1093/jamiaopen/ooaf113 | PMID 41140463 Get It

Abstract Objectives To implementation an automated multi-institutional pipeline that delivers breast-cancer risk integrated with polygenic risk scores, monogenic variants, family history, and clinical factors, emphasizing operational challenges and their solutions. Materials and Methods A five-stage process was executed at ten sites. Data streams from REDCap surveys, PRS and monogenic reports, and MeTree pedigrees were normalized and forwarded through a REDCap plug-in to the CanRisk API. Results Integrated risk was returned to >10 000 women; 3.6% were ≥25 % lifetime risk and 0.9% carried pathogenic variants. Pipeline generated score aligns well with manual generated ones. Major barriers such as heterogeneous pedigree formats, missing data, edge-case handling, and evolving model versions were identified and resolved through mapping rules, imputations, and iterative testing. Discussion Cross-platform data harmonization and stakeholder alignment were decisive for success. Borderline-risk communication and model-version drift remain open issues. Conclusion Large-scale PRS-integrated breast-cancer risk reporting is feasible but requires robust interoperability standards and iterative governance.
Assessing and Resolving Findings of Sex Chromosome Discordance in Genetic Testing
Salsbery, Kyle , Essendrup, Anna, Gilmer, Heather C. Flynn, Nelson-Holte, Molly, Choate, Lauren A. , Salsbery, Kyle T, Essendrup, Anna A, Flynn Gilmer, Heather C, Nelson-Holte, Molly H, Niu, Zhiyv

The Journal of Applied Laboratory Medicine | October 3, 2025 | Volume: 11 | Issue: 1 | Pages: 4-14

10.1093/jalm/jfaf167 | PMID 41189046 Get It

Abstract Background X and Y chromosome analysis is a critical component of genetic testing, used both diagnostically and as a quality control (QC) metric. Discordances between expected and observed sex chromosome data can arise due to mislabeling, demographic data errors, transplant history, or biological variations. Such discordances pose challenges to laboratories and affect patient care, particularly in marginalized populations and unique clinical contexts. Methods We reviewed cases of sex chromosome discordance identified at our laboratory from January 2021 through August 2023. Cases spanned various testing methods and were categorized by the root cause, including mislabeling, sample mix-ups, transgender individuals, stem cell transplants, and unexplained causes. Case outcomes were assessed, and potential resolutions were analyzed. Results Among 65 cases identified, the leading cause of discordance was mislabeling (n = 20, 31%), followed by other/not identified (n = 16, 25%), sample mix-ups (n = 13, 20%), transgender individuals (n = 9, 14%), and stem cell transplants (n = 7, 11%). Cases required additional QC processes such as reanalysis, clinician contact, and occasionally sample re-collection. The process extended turnaround times by up to 13 business days. Detailed case reviews highlighted the challenges and implications of managing these discordances, emphasizing the importance of accurate data transmission and inclusive practices. Conclusion Using X and Y chromosome data as a QC metric can identify critical errors but also introduces limitations and bias. Improved standardization, inclusive practices, and alternative QC methods are necessary to ensure accuracy and equitable patient care. Collaborative efforts are required to address demographic complexities and reduce testing delays.
Enhancing Care: Caring for Transgender and Gender Diverse Patients in the Emergency Department
Brown, Caitlin S. , Schofield, Kyle , Sunga, Kharmene , Olswold, Tiffany, Herndon, Justine , Roe, Keith, Davidge‐Pitts, Caroline , Engstrom, Kellyn , Fonseca, Fi

JACCP: JOURNAL OF THE AMERICAN COLLEGE OF CLINICAL PHARMACY | October 3, 2025 | Volume: 8 | Issue: 11 | Pages: 1175-1186

10.1002/jac5.70122 Get It

ABSTRACT Transgender and gender diverse (TGD) individuals face minority stress and often avoid the emergency department (ED) due to previous negative experiences. The goal of this review is to prepare the emergency medicine pharmacist to care for TGD patients, with the ultimate goal of improving the care TGD patients receive. This review summarizes interactions with TGD patients, trauma‐informed considerations, physical exam and organ inventory sensitivities, and gender‐affirming hormone therapy and complications that may arise and be seen in the ED. Additionally, this review discusses common complaints and considerations that may commonly arise when caring for TGD patients.
Abstract A059: The role of Lamin A in pancreatic cancer nuclear envelope stability
LaRue-Nolan, Kayla C. , Sigafoos, Ashley N. , Flores, Luis F. , Fernández-Zapico, Martín E. , Roux, Kyle J.

Cancer Research | September 28, 2025 | Volume: 85 | Issue: 18_Supplement_3 | Pages: A059-A059

10.1158/1538-7445.pancreatic25-a059 Get It

Abstract Pancreatic ductal adenocarcinoma (PDAC), the most common histological subtype of pancreatic cancer, is a devastating disease predicted to be the second leading cause of cancer deaths by 2040. Despite extensive molecular characterization, therapeutic targeting of this disease remains largely unsuccessful. Thus, an increased understanding of the mechanisms driving malignant features of PDAC is critical for the development of new therapeutic strategies. Of these, cancer cell survival is a central malignant event in PDAC contributing to disease initiation, progression, and response to therapy. To date, the majority of cell survival mechanisms associated with PDAC biology has highlighted the role of cytoplasmic and extracellular factors, making the role of nuclear elements understudied. Our preliminary data has demonstrated evidence of a novel mechanism regulating nuclear envelope stability, a key process contributing to cell survival. Work from our lab has shown that oncogenic KRAS, the major genetic driver of PDAC and present in ∼40% of cases, is sufficient to reduce the incidence of spontaneous nuclear envelope rupture, a measure of nuclear envelope stability. Using laser-induced nuclear envelope rupture revealed the presence of oncogenic KRAS decreases the extent of ruptures, suggesting an axis downstream of oncogenic KRAS is key for regulation of nuclear stability. Analysis of nuclear lamins, key intermediate filaments providing structure to the nuclear envelope, revealed only A-type lamins, not B-type, are associated with overall PDAC survival and enrich at the nuclear periphery downstream of oncogenic KRAS. Furthermore, BioID protein-protein interaction assays to examine the oncogenic KRAS-induced effects on nuclear repair proteins identified an increase in interaction between Lamin A and Emerin. Knock-down of either protein results in increases in nuclear envelope spontaneous ruptures. Together our findings provide a novel oncogenic KRAS-Lamin A-Emerin axis controlling the nuclear stability in PDAC, which can serve as a new therapeutic avenue to improve PDAC treatment outcomes. Citation Format: Kayla C. LaRue-Nolan, Ashley N. Sigafoos, Luis F. Flores, Kyle J . Roux, Martin E. Fernandez-Zapico. The role of Lamin A in pancreatic cancer nuclear envelope stability [abstract]. In: Proceedings of the AACR Special Conference in Cancer Research: Advances in Pancreatic Cancer Research—Emerging Science Driving Transformative Solutions; Boston, MA; 2025 Sep 28-Oct 1; Boston, MA. Philadelphia (PA): AACR; Cancer Res 2025;85(18_Suppl_3):Abstract nr A059.
Prenatal Testing of a Complex Pathogenic Variant following Positive Carrier Screening for Gaucher Disease
Ding, Qiliang , Salsbery, Kyle , Vidal-Folch, Noemi, Oglesbee, Devin, Hasadsri, Linda , Salsbery, Kyle T, Hasadsri, Linda , Vidal‐Folch, Noemi, Oglesbee, Devin

Clinical Chemistry | September 27, 2025 | Volume: 72 | Issue: 1 | Pages: 11-15

10.1093/clinchem/hvaf125 | PMID 41468137 Get It

80: A Novel Lens on ECMO: Video Review to Enhance Team and System Performance
Augustin, Katrina , Diedrich, Daniel A. , Arguello, Rob, Finch, Alex, Seelhammer, Troy G. , Spencer, Philip, Neff, Alexis, Bohman, Kyle, Finch, Alex, Neff, Alexis, Bohman, Kyle

ASAIO Journal | September 26, 2025 | Volume: 71 | Issue: Supplement 4 | Pages: 76-76

10.1097/01.mat.0001169320.15682.15 Get It

164: Clinical and microbiological characterization of nosocomial pneumonia in patients receiving extracorporeal membrane oxygenation support: A 11-year experience
Kim, Myeongji, Ranganath, Nischal, Wieruszewski, Patrick, Lynn-Green, Erika, Igwilo-Alaneme, Rita, Marcus, Joseph, Lyster, Haifa, Seelhammer, Troy, Bohman, Kyle, Shah, Aditya, Kim, Myeongji, Ranganath, Nischal, Wieruszewski, Patrick, Lynn-Green, Erika, Igwilo-Alaneme, Rita, Marcus, Joseph, Lyster, Haifa, Seelhammer, Troy, Bohman, Kyle, Shah, Aditya

ASAIO Journal | September 26, 2025 | Volume: 71 | Issue: Supplement 4 | Pages: 11-11

10.1097/01.mat.0001168876.84972.fa Get It

Practice Patterns in Management of Low‐ to Intermediate‐Grade Salivary Gland Carcinoma: A Multi‐Institutional Study
Sajisevi, Mirabelle , Nguyen, Kenny , Holcomb, Andrew J. , Vural, Emre , Davis, Kyle P. , Thomas, Carissa M. , Stein, John S. , Aulet, Ricardo , Bell, Rebecca K. , Blasco, Michael A., Bowmaster, Vanessa B., Chung, Jeffson , Cognetti, David M. , Cordero, Joehassin , Donovan, John, Du, Yue , Eskander, Antoine , Feinberg, Philip A. , Garvey, Emily A. , Goldstein, David P. , Goulart, Rafael Nunes, Grasl, Stefan , Giurintano, Jonathan , Hara, Jared H. , Hinni, Michael L., Hua, Nadia , Johnson‐Obaseki, Stephanie , Kalman, Noah S. , Khaja, Sobia F. , Ku, Jamie A., Lambert, Arnaud, Luu, Bao K. , Magliocca, Kelly R. , Santos, Luiz Roberto Medina dos , Michael, C. A., Miles, Brett, Melo, Giulianno Molina de , Moore, Michael G. , Moura, Kauê, Noroozi, Hesameddin, Patel, Rusha , Paydarfar, Joseph A. , Plonowska‐Hirschfeld, Karolina A. , Savaria, Fabrice N., Schmitt, Nicole C. , Shapiro, Justin , Stokes, William A. , Sulibhavi, Anita , Vendra, Varun , Vinh, Daniel , Virgen, Celina G. , Woody, N.M. , Young, Geoffrey D., Enepekides, Danny , Hier, Michael , Ryan, William R. , Holcomb, Andrew J , Thomas, Carissa M , Asarkar, Ameya A , Chung, Jeffson , Chan, Kimberly , Chang, Brent A , Dundar, Yusuf , Dedivitis, Rogerio , Goldstein, David , Goyal, Neerav , Grasl, Stefan , Giurintano, Jonathan , Gupta, Nikita , Habib, Andy , Hackman, Trevor , Henson, Christina , Kejner, Alexandra E , de Melo, Giulianno Molina , Morand, Gregoire B , Paydarfar, Joseph , Sadeghi, Nader , Schmitt, Nicole C , Shaver, Timothy B , Tasoulas, Jason , CALLAS, PETER W. , Burruss, Clayton P. , Chang, Brent A. , Coffey, Charles S. , Cooper, Dylan Jacob , Donovan, John, Edwards, Heather , Erović, Boban M. , Goodman, Joseph , Juloori, Aditya , Michael, Cara, Miles, Brett, Morand, Grégoire B. , Stoeckli, Sandro Johannes , Kakarala, Kiran , Davies, Louise

Laryngoscope Investigative Otolaryngology | September 23, 2025 | Volume: 10 | Issue: 5 | Pages: No page available

10.1002/lio2.70246 | PMID 40995062 Get It

ABSTRACT Objectives To characterize practice patterns and outcomes in the management of low‐ and intermediate‐grade salivary gland carcinoma prior to the existence of treatment guidelines. Methods Analysis of a registry of patients who underwent parotid and submandibular gland resections for low‐and intermediate‐grade carcinomas between 2010 and 2019. Results Of all 786 patients included in the study, 726 (92%) had preoperative imaging and 653 (83%) had preoperative biopsy. Of the 729 patients with parotid gland cancer, the majority underwent superficial ( n = 384, 53%) or total ( n = 254, 35%) parotidectomy. In patients with facial nerve preservation, total parotidectomy was associated with a significant increase in transient facial weakness (72/177 (41%) vs. 82/311 (26%), RR 0.65, 95% CI 0.50–0.84, p < 0.05) and permanent facial nerve weakness (23/176 (13%) vs. 16/301 (5%), RR 0.41, 95% CI 0.22–0.75, p < 0.05) compared to superficial parotidectomy. Adjuvant radiation therapy ( RT ) was delivered to 285 (36%) patients. The proportion of patients receiving adjuvant RT declined significantly over the time period from 2015 to 2019 compared to 2010 to 2014 at 162/504 (32%) and 123/282 (44%), respectively ( RR 0.74, 95% CI 0.61–0.89, p < 0.05). When comparing the time periods from 2015 to 2019 and 2010 to 2014, there was no significant difference in local control rates ( RR 0.52, 95% CI 0.26–1.04, p = 0.06) or regional control rates ( RR 0.75, 95% CI 0.26–2.13, p = 0.58). Conclusions Management of low‐ and intermediate‐grade salivary cancer from 2010 to 2019 was variable, which is expected given the rarity and heterogeneity of the disease and the lack of treatment guidelines prior to 2021. Most patients with parotid malignancies underwent superficial or total parotidectomy. The extent of parotidectomy had an impact on facial nerve function outcomes. Delivery of adjuvant radiation trended down with time. The data presented here will support dissemination of the guidelines and provide data that could inform future trials. Level of Evidence 2b.