Petersen, Ronald C.

AbstractBackgroundQuantifying white matter using diffusion MRI (dMRI) has been proposed for measuring early microstructural tissue changes due to cerebral small vessel disease and aid in quantifying vascular contributions to cognitive impairment and dementia (VCID). Our goal was to compare the usefulness of longitudinal white matter changes in the commonly available diffusion MRI measures for VCID prevention trials.MethodWe included 718 participants over 50 years of age (mean age: 71.1(9.6) years) from the Mayo Clinic Study of Aging, a population‐based sample, with at least two dMRI scans and structural imaging. We computed the commonly available single‐shell dMRI measures (fractional anisotropy, mean diffusivity, and two MarkVCID measures ‐ free water and peak‐width skeletonized mean diffusivity [PSMD]) at each time point. We tested for voxel‐wise associations between dMRI markers and vascular risk measured by cardiovascular metabolic condition (CMC) and observed a region‐specific dependance across all dMRI measures. Using both global and regional dMRI measures, we (i) examined the longitudinal association of dMRI measures with cognition and (ii) computed sample size estimates for a hypothetical clinical trial. We also included white matter hyperintensities (WMH) and our previously proposed composite vascular white matter score (combination of WMH and fractional anisotropy of the genu) as a comparison.ResultVascular risk was associated with all single shell dMRI measures in the genu of the corpus callosum, which we included as a regional dMRI marker for comparison (Figure 1). All dMRI markers correlated with cognitive performance longitudinally (Table 1) and had comparable sample size estimates required for hypothetical VCID clinical trials (Figure 2). Further, global free water and the composite vascular white matter score had the smallest sample size estimates.ConclusionAll commonly used dMRI markers had significant frontal lobe changes due to vascular risk. Both global and regional corpus callosum dMRI markers were sensitive to longitudinal cognitive decline, suggesting their utility in measuring the slowing down of VCID. The composite vascular white matter score, global free water, and WMH show promise as VCID biomarkers. Further work is needed to validate these markers on multiple populations.

AbstractBackgroundThere has been a recent proliferation of various quantities based on single shell Diffusion Tensor Imaging (DTI) for capturing overall cerebrovascular health, especially Small Vessel Disease (SVD) as a single number. The existing literature has gaps in the comparison of these measures, so we evaluated them as predictors of both current and future White Matter Hyperintensity (WMH) as a proxy of SVD.MethodUsing baseline 3T MRI examinations (T1, DTI, FLAIR scans) of 598 participants (>60 years, amyloid negative, to limit to those on the SVD pathway) from the Mayo Clinic Study of Aging, we calculated five summary DTI quantities with varying degree of complexity. We estimated their partial R2 from cross‐sectional linear regression models and computed semi‐partial R2 from mixed models predicting WMH volume as a percentage of Total Intracranial Volume (TIV). All models were adjusted for age, sex, and scanner model, and the WMH and based were log‐transformed before fitting. We also conducted subset analyses with high (WMH+) vs. low (WMH‐) baseline WMH load (cut at 1.62%) to compare the performance of the measures in early vs. widespread WMH.ResultAll MD‐based quantities computed on the whole brain, including FWF, performed similarly to each other, but Genu FA underperformed at explaining WMH variance (Table 1). PSMD (skeletonized or atlas based) was more sensitive in WMH+ but dramatically less so in WMH‐. In WMH‐ and overall cohort, FWF and JHU MD (which is a simple averaging of MD in the JHU atlas) performed well.ConclusionAll MD‐based measures performed similarly to each other in the whole dataset but dichotomizing by WMH load showed interesting differences. PSMD measurements are driven by the extreme end (95th percentile) of the MD distribution and therefore more sensitive in WMH+. Genu FA, a regional measure, was not useful for predicting whole brain WMH change. We noticed some variation in how the quantities are affected by scanner model (GE Signa HDxt and Discovery 750) which needs broader investigation. Simply averaging MD over WM avoids additional processing and is more sensitive to WM degeneration that is not (yet) severe.

AbstractBackgroundDementia with Lewy bodies (DLB) frequently co‐occurs with Alzheimer’s disease (AD) pathologies, exacerbating disease progression. Biophysical models of diffusion imaging data, such as Neurite Orientation Dispersion and Density Imaging (NODDI), may reveal novel insights into the neurobiological substrates of AD on cortical and white matter microstructural injury.MethodA cohort of 57 DLB patients on the DLB spectrum (33 clinically probable DLB and 14 prodromal DLB) and 57 cognitively unimpaired (CU) controls underwent NODDI and PET imaging with [18F]‐Flortaucipir and [11C]‐PiB (Table 1). NODDI parameters were derived from white matter tracts and grey matter regions using the JHU “Eve” and Mayo Clinic Adult Lifespan Template atlases, respectively. Conditional logistic models were used to compare these parameters between the two groups, accounting for the 1:1 matching on age and sex. The associations of tau and amyloid‐β with NODDI parameters across the white matter tracts were examined with linear regressions. A region‐by‐region approach was adopted to evaluate the relationships of tau and amyloid‐β with grey matter NODDI, adjusting for age, APOE, and local grey matter volumes.ResultDLB spectrum patients exhibited extensive white matter abnormalities relative to CU, including lower fractional anisotropy, higher mean diffusivity (MD), and lower tissue‐weighted neurite density (tNDI). In grey matter, these deficits were paralleled with higher MD and lower tNDI and ODI, primarily in the temporoparietal and posterior cortices. Regression models revealed significant associations of elevated [18F]‐Flortaucipir uptake with deficits in temporal and limbic white matter tracts and a temporal‐lobe pattern of higher MD and lower tNDI in the cortex (Figure 1). No associations were observed with [11C]‐PiB in the DLB spectrum.ConclusionThese findings demonstrated an in vivo relationship between tau deposition and neurite deficits that spatially aligned with the canonical AD “cortical signature” of neurodegeneration in both white matter tracts and grey matter regions in DLB. Our study underscores the detrimental impact of AD pathology in DLB and provides a rationale for further investigations into the underlying mechanisms of AD in DLB. Future longitudinal studies tracking the progression of these changes could inform therapeutic strategies for DLB in the presence of AD pathologies

AbstractBackgroundThe TAR DNA‐binding protein of 43 kDa (TDP‐43) is linked to hippocampal volume loss and faster rates of hippocampal atrophy in Alzheimer's disease and primary age‐related tauopathy (PART). Hence, TDP‐43 is becoming an important player in age‐related neurodegeneration. To advance our understanding of TDP‐43 effect on hippocampus, we conducted an imaging‐pathological study to determine which specific hippocampal subfields are affected by TDP‐43 in cases of PART.MethodOne‐hundred fifteen autopsied cases from Mayo Clinic Alzheimer Disease Center, Study of Aging and Neurodegenerative Research Group were analyzed. All had completed antemortem brain MRIs, underwent neuropathological examination per NIA and Alzheimer’s Association (NIA‐AA) criteria and had additional assessment for TDP‐43 deposition. Only cases meeting criteria for PART (Thal phases 0‐2 and Braak NFT stages I‐IV) were included. Hippocampal subfield segmentation was performed using FreeSurfer‐7. Brain volumes were normalized to total intracranial volume (TIV) when comparing TDP‐43 groups. Statistical analyses including logistic regression analyses were utilized to explore associations between TDP‐43 status and hippocampal subfield volumes.ResultForty‐nine of the 115 cases (43%) with PART were female. Thirty‐seven (32%) cases were TDP‐positive. Mean age at last MRI was 84 years. There were no differences in pathological characteristics between both groups except for presence of hippocampal sclerosis which was more frequent in the TDP(+) group (P <0.001). Whole hippocampal volume was significantly smaller in the TDP(+) group (176 ±31 vs. 188 ±27, p=0.049). After stratification of hippocampus into head, body, and tail, TDP‐positive cases had smaller volumes of hippocampal body (p=0.031) and tail (p=0.021) but did not reach significance for hippocampal head (p=0.129). When regions were subdivided into hippocampal subfields, TDP(+) cases showed smaller volumes of molecular layer of the hippocampal body (p=0.046), CA1 body (p=0.031), subiculum body (p=0.023), and presubiculum body (p=0.046) compared to TDP(‐) cases. Logistic regression analysis adjusting for TIV confirmed these associations.ConclusionThis study underscores the association between TDP‐43 and the hippocampus and provides further evidence that TDP‐43 targets multiple regions and subfields of the hippocampus in patients with PART. Intriguingly, regions targeted are those where TDP‐43 deposition is microscopically observed, suggesting a direct “hit” by TDP‐43 deposition.

AbstractBackgroundTwo main risk factors of Alzheimer’s disease (AD) are aging and APOE‐ε4. However, some individuals remain cognitively normal despite having these risk factors. They are considered “cognitively resilient”. This study aimed to identify molecular factors that confer cognitive resilience in APOE‐ε4 carriers ≥ 80 years of age and may serve as biomarkers.MethodWe applied weighted gene co‐expression network analysis (WGCNA) to generate consensus co‐expression networks from blood of participants in two antemortem cohorts, the Mayo Clinic Study of Aging (MCSA, n=105), and the Alzheimer’s Disease Neuroimaging Initiative (ADNI, n=91), using RNA‐sequencing and microarray data, respectively. We associated these networks with resilience (resilient vs non‐resilient), cognitive endophenotypes and hippocampal volume. Preservation between consensus networks from blood and those derived from postmortem brain tissues of AD and control donors from AMP‐AD (n=1174) was evaluated. We validated the human findings in four AD mouse models. Finally, machine learning models were utilized to discriminate cases (AD+mild cognitive impairment (MCI)) from controls in MCSA, ADNI and ANMerge antemortem cohorts.ResultFour consensus networks were significantly correlated with a memory phenotype (logical memory delayed recall=LMDR) and hippocampal volume in both MCSA and ADNI. Among these, blood expression module M3 was most preserved with the brain transcriptome. M3 was enriched with NDUF hub genes that are involved in the mitochondrial respiratory chain. Expression levels of M3 and many blood NDUFs had significant associations with better LMDR and hippocampal volume. In brain, NDUFs were upregulated in controls compared to AD, and their expression levels were associated with better global cognition and decreased AD neuropathology. Many NDUFs were significantly downregulated in the hippocampus or cortex of AD mice compared to wild‐types. Lastly, models that included blood NDUFs improved diagnostic accuracy of AD+MCI compared to models that only included demographic and risk variables (age, sex, APOE‐ε4) in MCSA, ADNI and ANMerge. In MCSA and ADNI, adding NDUFs’ expression to models that included established blood biomarkers (Aβ42/40, ptau181, NFL) further improved diagnostic accuracy.ConclusionOur results suggest that mitochondrial NDUFs are centrally‐linked peripheral molecular signatures that may be resilience factors against AD and serve as both therapeutic targets and novel diagnostic biomarkers.

AbstractBackgroundUnderstanding the relationship between AβPET and AβCSF biomarkers will define their potential utility in Aβ treatment. Few longitudinal or neuropathological comparisons have been reported. We assessed the relationship of AβPET and AβCSF biomarkers in a large community cohort.MethodParticipants 50+ years with coincident AβPET and AβCSF biomarkers (pTau181/Aβ42, n=505, and Aβ42/40, n=54) were included. Of these participants, a subgroup was identified that had neuropathology data (n=47) of which many had longitudinal AβPET and CSF testing. The relationships of AβPET and CSF biomarkers were assessed cross‐sectionally in all participants and longitudinally in those with autopsy data. Analyses were performed using AβPET Meta‐ROI and AβPET early‐Aβ‐deposition ROIs (ROIs with early Aβ deposition: fusiform, angular, inferior temporal, middle temporal, middle occipital, and calcarine).ResultIn biomarker tests performed at the same time, more participants were AβPET+ and CSF‐ than AβPET‐ and CSF+ using Meta‐ROI AβPET. This discordance occurred more frequently when using early‐Aβ‐deposition regions (Figure 1). Of 47 participants with autopsy data, 35 had Thal stage ≥1. The sensitivity for earliest detection of cortical Aβ neuropathology by AβPET was 89% (31/35) and by CSF was 66%, (23/35). Eight of these 35 had positive AβPET findings and negative coincident CSF tests at the first time tested. Of these, 5/8 were Meta‐ROI and early AβPET ROI positive. The other 3/8 were only positive on early‐Aβ AβPET ROIs. Four of the 8 with negative CSF and positive AβPET had subsequent testing and 2/4 became positive on CSF tests after 1.5 years while 2/4 continued to be negative on subsequent testing.ConclusionAβPET is more sensitive for detection of early cortical Aβ deposition than CSF biomarkers in cross‐sectional or autopsy data. While the assessment of AβPET by standard Meta‐ROI AβPET methods showed cortical Aβ deposition occurring when not indicated by CSF biomarkers, AβPET ROIs for early Aβ deposition detected additional participants that were AβPET positive and AβCSF negative. These findings have implications for detecting early Aβ neuropathology among CU participants in Aβ prevention trials when robust detection is needed. Further work is needed to compare Aβ plasma biomarkers and AβPET using these methods.

AbstractBackgroundSeveral programs are available for automatically “de‐facing” brain images. These are designed to prevent the potential use of face imagery to re‐identify research participants. Previous works have compared available software and mri_reface is frequently among the top methods. The “Minimally Invasive DeFacing of MRI images” (MiDeFace) program was more recently added to FreeSurfer, but minimal validation of MiDeFace has been published.MethodWe ran mri_reface 0.3.3 and MiDeFace 7.3.2 on two datasets: A) 207 participants with face photographs and 3D T1‐weighted and 3D T2‐weighted‐FLAIR MRI from the Mayo Clinic Study of Aging (all unimpaired, Siemens); and B) 300 participants from ADNI3 with 3D T1‐weighted MRI (50 unimpaired + 50 with clinical AD, from each of 3 vendors). For dataset A, we tested the rate at which Microsoft Azure face recognition matched each participant’s photographs with the correct MRI, comparing unmodified images, those from mri_reface, and those from MiDeFace. For dataset B, we compared measured regional brain volume and cortical thickness from original vs. de‐faced images with SPM12, FreeSurfer 7.4.1, and the FSL‐UK Biobank pipeline. For both datasets, images were visually rated to assess removal of the face and retention of brain tissue.ResultAutomated face recognition match rates were lower with mri_reface (17/207 8.2%) than with MiDeFace (24/207 11.6%), indicating stronger identity protection with mri_reface, but both were greatly reduced vs. unmodified images (203/207 98.1%). Example images with both programs are shown in Figure 1. From visual ratings (Table 1), rates of complete success (modification of the entire face while retaining the entire brain) were much higher with mri_reface, but the great majority of failures from MiDeFace were subtle and occurred in relatively less recognizable face regions. The effects of both programs on downstream imaging measurements (Figure 2) were small and very comparable, but MiDeFace was favored mildly for SPM12 and for FSL, while mri_reface was more favored for FreeSurfer.ConclusionAltogether, mri_reface more reliably removed the complete face, leading to smaller rates of potential re‐identification (8.2% vs 11.6%). Effects on downstream image measurements were small and comparable with both methods.

Abstract Background The Mayo Clinic Study of Aging (MCSA) is a longitudinal, population‐based study of residents of Olmsted County, Minnesota, USA. MCSA is releasing de‐identified clinical and imaging data on GAAIN.org to benefit the research community. Method We included longitudinal clinical data from all participants of the Mayo Clinic Study of Aging 30‐90 years of age (average 70.0y) through the first 15 years of the study. Clinical data includes age, sex, self‐reported race/ethnicity, APoE4 allele status, cognitive impairment status (normal, MCI, dementia, or other), height, weight, blood pressure, multi‐domain neuropsychological scores, neuroimaging summary measurements, medications, cardiovascular risk factors, social activity, sleep, mood/anxiety, functional measures, and more. For our initial release of imaging data, we selected the first imaging timepoint acquired on 3T GE MRI scanners and amyloid (PiB) PET during the same visit, from all available imaging participants 50‐90 years of age (average 70.7y). Currently, we included 3D T1‐weighted (MPRAGE) MRI (1x1x1.2mm 3 ), T2‐weighted FLAIR MRI (0.85x0.85x3.6mm 3 ), diffusion MRI (2.7mm resolution with 41 directions at b=1000 and 5 b=0), and numeric cortical global SUVR and Centiloid values from PiB PET scans at 40‐60 minutes post‐injection. All images are released in DICOM format and thoroughly de‐identified using CTP while ensuring preservation of necessary fields for analyses. T1‐weighted and T2‐FLAIR MRI were also de‐faced (identifiable face imagery was removed and replaced with an average) using mri_reface version 0.3.3 to further protect participants’ privacy, and all de‐faced images were visually inspected by a trained data scientist for quality assurance. Result The first phase of our public data release includes clinical data from 5925 unique participants from the Mayo Clinic Study of Aging (MCSA), each ranging from 1‐12 visits at roughly 15‐month intervals, and three MRI sequences (T1‐w, T2‐w‐FLAIR, and diffusion) from 1802 unique participants. Demographic summaries are given in Table 1. Conclusion This large, richly characterized, de‐identified clinical and imaging dataset is available to the research community at https://www.gaaindata.org/partner/MCSA , and it is suitable for a wide range of research uses. Additional data will be released over time, including de‐faced amyloid PET images.

AbstractBackgroundWhite matter (WM) damage is seen with neurodegenerative and cerebrovascular pathologies and contributes to cognitive dysfunction. We hypothesized that there are multiple disease progression patterns in WM microstructural changes related to aging and dementia, and these can be identified using SuStaIn (data‐driven clustering algorithm for disease subtype and stage discovery) on multishell diffusion MRI (NODDI) data. NODDI provides information on cellular tissue architecture – neurite density index (NDI) measures packing density of axons and dendrites, and free water fraction (FWF) measures unrestricted water, e.g., interstitial and cerebrospinal fluid.MethodWe identified 1136 participants (mean age=70 years, 51% male, 40% Aβ‐positive, 19% MCI/AD dementia) from the Mayo ADRC and Mayo Clinic Study of Aging. We analyzed NDI and FWF in 55 WM regions. We selected a subset of WM features that monotonically changed with clinical disease progression and then applied the Z‐score SuStaIn algorithm.ResultNDI in seven regions and FWF in six regions survived selection criteria (Figure 1). Noteworthy, the NDI regions were predominantly located in the temporal lobe, while FWF regions were primarily distributed in the frontal and subcortical regions. The SuStaIn algorithm discovered two stable clusters: the NDI‐First (Temporal) and FWF‐First (Frontal) groups (Figure 2). For the NDI‐First group, temporal lobe NDI changed early followed by frontal FWF. The FWF‐First group had the reverse order. There was clear phase separation based on which measure changed first. Stages of the NDI‐First group correlated better with meta‐ROI Tau‐PET SUVR and with MMSE than the FWF‐First group (p<0.01), suggesting that NDI‐First may be indicative of a primarily AD pathway.ConclusionGiven NDI changes are likely degenerative and FWF are suggested to be other processes such as neurodegeneration or inflammatory, the observed changes in the temporal and frontal regions may be due to distinct etiologies, i.e., neurodegenerative in the temporal lobes vs. vascular dysfunction often observed in the frontal lobes. The SuStaIn algorithm showed promise in discovering disease subtypes of WM microstructural changes. Further work is needed to understand the mechanistic basis of these observed changes and integrate WM changes for differential etiology identification and disease staging.

AbstractBackgroundTau phosphorylated at threonine 217 (pTau217) is one of the most promising blood‐based biomarkers of Alzheimer’s disease (AD). This study compares the performance of two plasma pTau217 immunoassays on the Simoa platform for detection of abnormal amyloid‐PET.MethodPlasma samples from 112 individuals without cognitive impairment and 114 with mild cognitive impairment (MCI) or AD related dementia were evaluated. Testing was performed on the Quanterix Simoa® HD‐X Analyzer using the ALZpath Simoa® pTau217 and the Simoa® ACC pTau217 (Janssen antibodies) commercial assays. Amyloid‐PET imaging was performed using 11C‐Pittsburgh Compound B and a standard uptake value ratio (SUVR) cutoff of ≥1.52 (≥25 Centiloid) was used for abnormal (n= 147) vs. normal (n= 79) classification. Passing‐Bablok regression analysis and Spearman’s correlation coefficient (rho) were used to estimate bias and correlation between the assays, respectively. Correlation of each assay with Amyloid‐PET SUVR was evaluated. Amyloid‐PET status as the outcome and plasma pTau217 as predictor was used to estimate the area under the receiver operating characteristic (ROC) curve (AUC).ResultThe pTau217 concentrations between the two assays showed an excellent correlation (Spearman’s rho= 0.94 [95% CI= 0.93 to 0.96, p<0.0001]). However, the Passing‐Bablok regression analysis equation for ALZpath (x‐axis) and ACC (y‐axis) was y= 0.1324x ‐ 0.0019, showing that measured pTau217 concentrations with the ALZpath assay were higher (∼87%) than with the ACC assay (concentrations ranged 0.057 to 3.5 pg/mL and 0.003 to 0.5 pg/mL, respectively). Correlations between amyloid‐PET SUVR and the two pTau217 immunoassays were almost identical with Spearman’s rho= 0.70 (95% CI= 0.62 to 0.76, p<0.0001) for ALZpath and 0.69 (95% CI= 0.61 to 0.75, p<0.0001) for ACC. The AUC for detection of an abnormal amyloid‐PET among the MCI/AD group was 0.88 (95% CI= 0.81 to 0.95) for ALZpath, and 0.89 (95% CI= 0.83 to 0.96) for ACC.ConclusionAnalytically, the two Simoa® pTau217 assays correlate well with each other, but results are not interchangeable due to a significant proportional bias. Clinically, the performance of the assays was largely equivalent for the detection of abnormal amyloid‐PET by AUC analysis based on their almost identical correlations with amyloid‐PET SUVR.