Back to Authors

Faquin, William C

0000-0002-9043-7171

Mayo Clinic

Massachusetts Eye and Ear Infirmary

Citations 10

Human and viral whole genome sequencing identify HPV and APOBEC as oncogenic drivers in sinonasal squamous cell carcinoma
Zaręba, Łukasz , Eldfors, Samuli , Bryan, Michael , Faquin, William C, Mirabello, Lisa J, Lewis, James S., Faden, Daniel L. , Bryan, Michael E , Faden, Daniel , Lin, Maoxuan , Faquin, William C , Mirabello, Lisa J. , Mishra, Sambit K. , Lewis, James S., Lawrence, Michael S.

No container title available | February 10, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.02.04.26345593 Get It

Abstract Sinonasal squamous cell carcinoma (SNSCC) is an aggressive head and neck cancer of the sinonasal cavity which has not benefitted from therapeutic advances over decades 1 . Though historically attributed to inhaled carcinogens such as hardwood dust and tobacco smoking 2 , SNSCC is incidentally associated with human papillomavirus (HPV) 3,4 . Importantly, HPV is the primary oncogenic driver of >80% of anatomically adjacent oropharyngeal cancers 5 . While viral status drives clinical staging and treatment guidelines in these malignancies 6,7 , the potentially oncogenic consequences and prognostic value of host–virus interactions in SNSCC remain incompletely defined. Here, through paired host and viral whole-genome sequencing (WGS), we map the genomic footprint of HPV in SNSCC. Strikingly, lesser studied strains such as HPV45, 51, and 39 constitute driver infections in this rare but clinically credentialed cancer, where extrachromosomal DNA (ecDNA)-associated viral integration and APOBEC mutagenesis are shown to underpin somatic tumor evolution. Statement of Significance Paired host viral and whole-genome sequencing of SNSCC nominates HPV as a primary oncogenic driver of SNSCC. HPV–human ecDNA amplicons harboring noncanonical strains such as HPV45, 51 mediate viral carcinogenesis. Routine clinical diagnostic HPV panels should be expanded to capture the activity of lesser studied strains.
Tissue Acquisition Techniques Take Center Stage: Discussion Synopsis of Papanicolaou Society of Cytology Companion Session at International Academy of Cytology Congress, Florence, Italy
Baloch, Zubair , Baskota, Swikrity Upadhyay , Monaco, Sara E. , Faquin, William C , Nassar, Aziza

Diagnostic Cytopathology | August 14, 2025 | Volume: 53 | Issue: 11 | Pages: 521-528

10.1002/dc.70003 Get It

Human Papillomavirus Testing in Head and Neck Carcinomas: Guideline Update
Lewis, James S. , Beadle, Beth M. , Kalicanin, Tanja, Lacchetti, Christina , Moncur, Joel T., Rocco, James W. , Schwartz, Mary R. , Seethala, Raja R. , Bishop, Justin A. , Chernock, Rebecca , Colasacco, Carol , Krane, Jeffrey F. , Faquin, William C

Archives of Pathology & Laboratory Medicine | March 24, 2025 | Volume: 149 | Issue: 6 | Pages: e115-e150

10.5858/arpa.2024-0388-cp Get It

Context.— In 2018, an evidence-based guideline was published by the College of American Pathologists to develop recommendations for the testing, application, interpretation, and reporting of high-risk human papillomavirus and surrogate marker tests in head and neck carcinomas. Substantial new evidence has prompted a review, including data on human papillomavirus (HPV) in nonoropharyngeal anatomic sites, HPV global rates, p16 immunohistochemistry, and HPV testing performance in cytology specimens, and performance of p16 immunohistochemistry as a surrogate marker. Objective.— To assess research published since the release of the original 2018 guideline and to update evidence-based recommendations for HPV testing in head and neck carcinomas. Design.— The College of American Pathologists convened a panel of experts to update the guideline following the standards established by the National Academy of Medicine for developing trustworthy clinical practice guidelines. The expert panel defined the key questions and performed a systematic review of the literature. Using the Grading of Recommendations Assessment, Development and Evaluation (GRADE) approach, recommendations were updated on the basis of available evidence, certainty of that evidence, and key judgments. Results.— Seven strong recommendations, 4 conditional recommendations, and 5 good practice statements are offered in the guideline update. Conclusions.— The updated guideline statements provide direction on the nature of HPV testing in various head and neck specimens (including key updates based on new research on sinonasal squamous cell carcinoma) and expanded guidance on specific scenarios and practice settings. The goal is to improve and standardize, where possible, HPV testing across diverse pathology practice settings and different countries.
Molecular Alterations and Comprehensive Clinical Management of Oncocytic Thyroid Carcinoma
Bischoff, Lindsay , Fugazzola, Laura , Buczek, Erin , Haugen, Bryan R. , McIver, Bryan, McMullen, Caitlin , Newbold, Kate, Rocke, Daniel J. , Russell, Marika D. , Ryder, Mabel , Sherman, Eric J. , Shindo, Maisie L., Stack, Brendan C. , Wirth, Lori J. , Randolph, Gregory W. , Ryder, Mabel , Ganly, Ian , Faquin, William C , Sadow, Peter M. , Shonka, David C. , Singer, Michael C. , Wong, Richard J. , Randolph, Gregory William

JAMA Otolaryngology–Head & Neck Surgery | January 11, 2024 | Volume: 150 | Issue: 3 | Pages: 265

10.1001/jamaoto.2023.4323 Get It

Importance Oncocytic (Hürthle cell) thyroid carcinoma is a follicular cell-derived neoplasm that accounts for approximately 5% of all thyroid cancers. Until recently, it was categorized as a follicular thyroid carcinoma, and its management was standardized with that of other differentiated thyroid carcinomas. In 2022, given an improved understanding of the unique molecular profile and clinical behavior of oncocytic thyroid carcinoma, the World Health Organization reclassified oncocytic thyroid carcinoma as distinct from follicular thyroid carcinoma. The International Thyroid Oncology Group and the American Head and Neck Society then collaborated to review the existing evidence on oncocytic thyroid carcinoma, from diagnosis through clinical management and follow-up surveillance. Observations Given that oncocytic thyroid carcinoma was previously classified as a subtype of follicular thyroid carcinoma, it was clinically studied in that context. However, due to its low prevalence and previous classification schema, there are few studies that have specifically evaluated oncocytic thyroid carcinoma. Recent data indicate that oncocytic thyroid carcinoma is a distinct class of malignant thyroid tumor with a group of distinct genetic alterations and clinicopathologic features. Oncocytic thyroid carcinoma displays higher rates of somatic gene variants and genomic chromosomal loss of heterozygosity than do other thyroid cancers, and it harbors unique mitochondrial DNA variations. Clinically, oncocytic thyroid carcinoma is more likely to have locoregional (lymph node) metastases than is follicular thyroid carcinoma—with which it was formerly classified—and it develops distant metastases more frequently than papillary thyroid carcinoma. In addition, oncocytic thyroid carcinoma rarely absorbs radioiodine. Conclusions and Relevance The findings of this review suggest that the distinct clinical presentation of oncocytic thyroid carcinoma, including its metastatic behavior and its reduced avidity to radioiodine therapy, warrants a tailored disease management approach. The reclassification of oncocytic thyroid carcinoma by the World Health Organization is an important milestone toward developing a specific and comprehensive clinical management for oncocytic thyroid carcinoma that considers its distinct characteristics.
American Head and Neck Society Endocrine Surgery Section and International Thyroid Oncology Group consensus statement on mutational testing in thyroid cancer: Defining advanced thyroid cancer and its targeted treatment
Shonka, David C. , Geiger, J.L. , Park, Jong Chul , Jasim, Sina , Ahmed, Amr H. Abdelhamid , Bible, Keith C. , Brose, Marcia S. , Dabekaussen, Kirsten F. A. A. , Dias‐Santagata, Dora , Ghossein, Ronald , Gopal, Raj K., Ryder, Mabel , Sherman, Eric J. , Shin, Jennifer J. , Stack, Brendan C. , Tuttle, R. Michael , Wirth, Lori J. , Zafereo, Mark , Park, Jong C , Abdelhamid Ahmed, Amr H , Cabanillas, Maria E , Davies, Louise , Ryder, Mabel M, Ryder, Mabel , Ho, Alan L. , Chintakuntlawar, Ashish V. , Seetharamu, Nagashree , Cabanillas, Maria E. , Fagin, James A. , Faquin, William C , Miyauchi, Akira , Nikiforov, Yuri E. , Ringel, Matthew D. , Robinson, Bruce , Sadow, Peter M. , Randolph, Gregory William

Head & Neck | March 11, 2022 | Volume: 44 | Issue: 6 | Pages: 1277-1300

10.1002/hed.27025 Get It

AbstractBackgroundThe development of systemic treatment options leveraging the molecular landscape of advanced thyroid cancer is a burgeoning field. This is a multidisciplinary evidence‐based statement on the definition of advanced thyroid cancer and its targeted systemic treatment.MethodsAn expert panel was assembled, a literature review was conducted, and best practice statements were developed. The modified Delphi method was applied to assess the degree of consensus for the statements developed by the author panel.ResultsA review of the current understanding of thyroid oncogenesis at a molecular level is presented and characteristics of advanced thyroid cancer are defined. Twenty statements in topics including the multidisciplinary management, molecular evaluation, and targeted systemic treatment of advanced thyroid cancer are provided.ConclusionsWith the growth in targeted treatment options for thyroid cancer, a consensus definition of advanced disease and statements regarding the utility of molecular testing and available targeted systemic therapy is warranted.
Consensus statement by the American Association of Clinical Endocrinology (AACE) and the American Head and Neck Society Endocrine Surgery Section (AHNS‐ES) on Pediatric Benign and Malignant Thyroid Surgery
Stack, Brendan C. , Twining, Christine, Rastatter, Jeff C., Diercks, Gillian R. , Kazahaya, Ken , Rivkees, Scott A. , Sheyn, Tony, Shin, Jennifer J. , Smith, Jessica R. , Thompson, Geoffrey B. , Viswanathan, Pushpa, Brooks, Jennifer A. , Angelos, Peter , Baloch, Zubair , Faquin, William C , Wassner, Ari J , Randolph, Gregory William

Head & Neck | January 2, 2021 | Volume: 43 | Issue: 4 | Pages: 1027-1042

10.1002/hed.26586 Get It

AbstractObjectivesTo provide a clinical disease state review of recent relevant literature and to generate expert consensus statements regarding the breadth of pediatric thyroid cancer diagnosis and care, with an emphasis on thyroid surgery. To generate expert statements to educate pediatric practitioners on the state‐of‐the‐art practices and the value of surgical experience in the management of this unusual and challenging disease in children.MethodsA literature search was conducted and statements were constructed and subjected to a modified Delphi process to measure the consensus of the expert author panel. The wording of statements, voting tabulation, and statistical analysis were overseen by a Delphi expert (J.J.S.).ResultsTwenty‐five consensus statements were created and subjected to a modified Delphi analysis to measure the strength of consensus of the expert author panel. All statements reached a level of consensus, and the majority of statements reached the highest level of consensus.ConclusionPediatric thyroid cancer has many unique nuances, such as bulky cervical adenopathy on presentation, an increased incidence of diffuse sclerosing variant, and a longer potential lifespan to endure potential complications from treatment. Complications can be a burden to parents and patients alike. We suggest that optimal outcomes and decreased morbidity will come from the use of advanced imaging, diagnostic testing, and neural monitoring of patients treated at high‐volume centers by high‐volume surgeons.
Cytologic grading of primary malignant salivary gland tumors: A blinded review by an international panel
Johnson, Daniel N. , Önenerk, Mine , Krane, Jeffrey F. , Barkan, Güliz A. , Bongiovanni, Massimo , Callegari, Fabiano , Canberk, Şule , Dixon, Glen R., Field, Andrew , Griffith, Christopher , Jhala, Nirag, Lin, Oscar , Perez‐Machado, Miguel , Pusztaszeri, Marc , Wang, He , Zarka, Matthew A., Rossi, Esther Diana , Barkan, Güliz , Bongiovanni, Massimo , Griffith, Christopher C , Jiang, Sara , Lin, Oscar , Maleki, Zahra , Pusztaszeri, Marc , Faquin, William C , Field, Andrew , Rossi, Esther Diana , Baloch, Zubair , Kurtycz, Daniel F. I. , Layfield, Lester James , Maleki, Zahra , Vielh, Philippe R.

Cancer Cytopathology | April 8, 2020 | Volume: 128 | Issue: 6 | Pages: 392-402

10.1002/cncy.22271 Get It

BackgroundFine needle aspiration (FNA) is commonly used for the preoperative evaluation of salivary gland tumors. Tumor grade is a key factor influencing clinical management of salivary gland carcinomas (SGCs). To assess the ability to grade nonbasaloid SGCs in FNA specimens, an international panel of cytopathologists convened to review and score SGC cases.MethodsThe study cohort included 61 cases of primary SGC from the pathology archives of 3 tertiary medical centers. Cases from 2005 to 2016 were selected, scanned, and digitized. Nineteen cytopathologists blinded to the histologic diagnosis reviewed the digitized cytology slides and graded them as low, high, or indeterminate. The panelists' results were then compared to the tumor grades based on histopathologic examination of the corresponding resection specimens.ResultsAll but 2 of the 19 (89.5%) expert panelists review more than 20 salivary gland FNAs per year; 16 (84.2%) of the panelists work at academic medical centers, and 13 (68.4%) have more than 10 years' experience. Participants had an overall accuracy of 89.4% in the grading of SGC cases, with 90.2% and 88.3% for low‐ and high‐grade SGC, respectively. Acinic cell carcinoma and mucoepidermoid carcinoma had the highest degree of accuracy, while epithelial‐myoepithelial carcinoma and salivary duct carcinoma had the lowest degree of accuracy. As expected, the intermediate‐grade SGC cases showed the greatest variability (high‐grade, 42.1%; low‐grade, 37.5%, indeterminate, 20.4%).ConclusionThis study confirms the high accuracy of cytomorphologic grading of primary SGC by FNA as low‐ or high‐grade. However, caution should be exercised when a grade cannot be confidently assigned.
AHNS Series: Do you know your guidelines? AHNS Endocrine Section Consensus Statement: State‐of‐the‐art thyroid surgical recommendations in the era of noninvasive follicular thyroid neoplasm with papillary‐like nuclear features
Nikiforov, Yuri E. , Terris, Davis, Seethala, Raja R. , Sabra, Mona M. , McIver, Bryan, Bernet, Victor , Harrell, R. Mack, Busaidy, Naifa L. , Sadow, Peter M. , Shindo, Maisie L., Nikiforov, Yuri , Terris, Davis , Bernet, Victor J, Ferris, Robert L. , Ridge, John Andrew , Angelos, Peter , Duh, Quan‐Yang , Wong, Richard J. , Fagin, James A. , Cibas, Edmund S. , Faquin, William C , Baloch, Zubair , Orloff, Lisa A. , Davies, Louise , Randolph, Gregory William

Head & Neck | June 27, 2018 | Volume: 40 | Issue: 9 | Pages: 1881-1888

10.1002/hed.25141 Get It

AbstractThe newly introduced pathologic diagnosis of noninvasive follicular thyroid neoplasm with papillary‐like nuclear features (NIFTP) will result in less bilateral thyroid surgery as well as deescalation in T4 suppressive and radioactive iodine treatment. Although, NIFTP is a nonmalignant lesion that has nuclear features of some papillary malignancies, the challenge for the surgeon is to identify a lesion as possibly NIFTP before the pathologic diagnosis. NIFTP, due to its reduction of overall rates of malignancy, will result in the initial surgical pendulum swinging toward lobectomy instead of initial total thyroidectomy. This American Head and Neck Society endocrine section consensus statement is intended to inform preoperative evaluation to attempt to identify those patients whose final pathology report may ultimately harbor NIFTP and can be offered a conservative surgical plan to assist in cost‐effective, optimal management of patients with NIFTP.
Diffuse Staining for Activated NOTCH1 Correlates With NOTCH1 Mutation Status and Is Associated With Worse Outcome in Adenoid Cystic Carcinoma
Sajed, Dipti P. , Carey, Christopher D. , Severson, Eric A. , Afrogheh, Amir , Blacklow, Stephen C. , Chau, Nicole G. , Lin, Derrick T., García, Joaquín J. , Sholl, Lynette M. , Faquin, William C , Johnson, Carl A., Krane, Jeffrey F. , Jo, Vickie Y. , Aster, Jon Christopher

American Journal of Surgical Pathology | September 14, 2017 | Volume: 41 | Issue: 11 | Pages: 1473-1482

10.1097/pas.0000000000000945 Get It

NOTCH1 is frequently mutated in adenoid cystic carcinoma (ACC). To test the idea that immunohistochemical (IHC) staining can identify ACCs with NOTCH1 mutations, we performed IHC for activated NOTCH1 (NICD1) in 197 cases diagnosed as ACC from 173 patients. NICD1 staining was positive in 194 cases (98%) in 2 major patterns: subset positivity, which correlated with tubular/cribriform histology; and diffuse positivity, which correlated with a solid histology. To determine the relationship between NICD1 staining and NOTCH1 mutational status, targeted exome sequencing data were obtained on 14 diffusely NICD1-positive ACC specimens from 11 patients and 15 subset NICD1-positive ACC specimens from 15 patients. This revealed NOTCH1 gain-of-function mutations in 11 of 14 diffusely NICD1-positive ACC specimens, whereas all subset-positive tumors had wild-type NOTCH1 alleles. Notably, tumors with diffuse NICD1 positivity were associated with significantly worse outcomes (P=0.003). To determine whether NOTCH1 activation is unique among tumors included in the differential diagnosis with ACC, we performed NICD1 IHC on a cohort of diverse salivary gland and head and neck tumors. High fractions of each of these tumor types were positive for NICD1 in a subset of cells, particularly in basaloid squamous cell carcinomas; however, sequencing of basaloid squamous cell carcinomas failed to identify NOTCH1 mutations. These findings indicate that diffuse NICD1 positivity in ACC correlates with solid growth pattern, the presence of NOTCH1 gain-of-function mutations, and unfavorable outcome, and suggest that staining for NICD1 can be helpful in distinguishing ACC with solid growth patterns from other salivary gland and head and neck tumors.
Salivary gland FNA: New markers and new opportunities for improved diagnosis
Pusztaszeri, Marc , García, Joaquín J. , Faquin, William C , Pusztaszeri, Marc

Cancer Cytopathology | November 5, 2015 | Volume: 124 | Issue: 5 | Pages: 307-316

10.1002/cncy.21649 Get It

Salivary gland fine‐needle aspiration represents one of the most challenging areas of cytopathology; however, the discovery of several novel and/or next‐generation immunocytochemical and molecular markers for salivary gland tumors has resulted in greater diagnostic accuracy in cytologic diagnosis. In this commentary, recent advances in salivary gland cytopathology are reviewed with a focus on salivary gland tumors associated with gene rearrangements.