Back to Authors

Bartholmai, Brian J.

https://orcid.org/0000-0001-7834-6579

Mayo Clinic

Mayo Clinic

Citations 71

Predicting Disease Relapse in ANCA Associated Vasculitis With Radiomics
Falde, S., Rajagopalan, S., Cartin‐Ceba, Rodrigo , Peikert, Tobias, Specks, Ulrich , Bartholmai, Brian J. , Rajagopalan, S.

B80-1. METHODOLOGICAL ADVANCEMENTS IN PULMONARY IMAGING | April 30, 2024 | Volume: No volume available | Issue: No issue available | Pages: A4502-A4502

10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a4502 Get It

Tracheobronchomalacia on Dynamic Expiratory View: Concordance Assessment in Interpretation
Matatko, M., Edell, Eric S. , Lim, Kaiser G. , Bartholmai, Brian J.

B21. RESEARCH STUDIES IN INTERVENTIONAL PULMONARY AND PLEURAL DISEASE | April 30, 2024 | Volume: No volume available | Issue: No issue available | Pages: A3077-A3077

10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3077 Get It

Bronchoscopic Lung Volume Reduction: Machine Learning Mathematical Model for Target Lobe Selection
Hostetter, Logan , Brown, L. E. , Rajagopalan, S., Scrodin, M. Dulohery, Edell, E.S., Lester, Michael , Maldonado, Fabien , Lentz, Robert J. , Peikert, T., Brown, L., Rajagopalan, S., Edell, Eric S. , Bartholmai, Brian J. , Peikert, Tobias

B21. RESEARCH STUDIES IN INTERVENTIONAL PULMONARY AND PLEURAL DISEASE | April 30, 2024 | Volume: No volume available | Issue: No issue available | Pages: A3065-A3065

10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a3065 Get It

A Novel Radiomics Tool for Early Detection of Idiopathic Pulmonary Fibrosis
Rajagopalan, S., Do, Quan , Nwakama, Chibuzo, Herberts, Michelle , McCoy, John J., Holmes, David R. , Peikert, Tobias, Limper, Andrew H. , Rajagopalan, S., Bartholmai, Brian J. , McCoy, J.J., III, D.R. Holmes,

C23. MACHINE LEARNED: AI-DRIVEN SOLUTIONS IN ILD AND LUNG TRANSPLANT | April 30, 2024 | Volume: No volume available | Issue: No issue available | Pages: A5103-A5103

10.1164/ajrccm-conference.2024.209.1_meetingabstracts.a5103 Get It

Evaluation of automated airway morphological quantification for assessing fibrosing lung disease
Pakzad, Ashkan , Cheung, WK., Moorsel, CHM. Van, Quan, Ke, Bartholmai, Brian J. , Es, HW. Van, Ezircan, A., Beek, F. Van, Veltkamp, Marcel , Karwoski, R., Peikert, Tobias, Clay, RD., Foley, Finbar, Braun, Christian, Sudre, Carole H. , Alexander, Daniel C. , Wijeratne, P. A. , Hawkes, David J. , Hurst, John R. , Jacob, Joseph , Bartholmai, Brian J , Cheung, Wing Keung , Quan, K., Moğulkoç, Nesrin , Clay, Ryan , Savaş, Recep , Doel, Tom , Hu, Y.

Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization | March 31, 2024 | Volume: 12 | Issue: 1 | Pages: No page available

10.1080/21681163.2024.2325361 Get It

Quantitative CT Texture Analysis of COVID-19 Hospitalized Patients during 3–24-Month Follow-Up and Correlation with Functional Parameters
Volpi, Federica, Colligiani, Leonardo , Chimera, Davide , Tonerini, Michele, Pistelli, Francesco , Pancani, Roberta , Airoldi, Chiara , Bartholmai, Brian J. , Cioni, Dania , Carrozzi, Laura , Neri, Emanuele , Liperi, Annalisa De, Colligiani, Leonardo , Pistelli, Francesco , Pancani, Roberta , Airoldi, Chiara , Bartholmai, Brian J , Cioni, Dania , Neri, Emanuele , Fanni, Salvatore Claudio , Romei, Chiara

Diagnostics | March 5, 2024 | Volume: 14 | Issue: 5 | Pages: 550

10.3390/diagnostics14050550 Get It

Background: To quantitatively evaluate CT lung abnormalities in COVID-19 survivors from the acute phase to 24-month follow-up. Quantitative CT features as predictors of abnormalities’ persistence were investigated. Methods: Patients who survived COVID-19 were retrospectively enrolled and underwent a chest CT at baseline (T0) and 3 months (T3) after discharge, with pulmonary function tests (PFTs). Patients with residual CT abnormalities repeated the CT at 12 (T12) and 24 (T24) months after discharge. A machine-learning-based software, CALIPER, calculated the CT percentage of the whole lung of normal parenchyma, ground glass (GG), reticulation (Ret), and vascular-related structures (VRSs). Differences (Δ) were calculated between time points. Receiver operating characteristic (ROC) curve analyses were performed to test the baseline parameters as predictors of functional impairment at T3 and of the persistence of CT abnormalities at T12. Results: The cohort included 128 patients at T0, 133 at T3, 61 at T12, and 34 at T24. The GG medians were 8.44%, 0.14%, 0.13% and 0.12% at T0, T3, T12 and T24. The Ret medians were 2.79% at T0 and 0.14% at the following time points. All Δ significantly differed from 0, except between T12 and T24. The GG and VRSs at T0 achieved AUCs of 0.73 as predictors of functional impairment, and area under the curves (AUCs) of 0.71 and 0.72 for the persistence of CT abnormalities at T12. Conclusions: CALIPER accurately quantified the CT changes up to the 24-month follow-up. Resolution mostly occurred at T3, and Ret persisting at T12 was almost unchanged at T24. The baseline parameters were good predictors of functional impairment at T3 and of abnormalities’ persistence at T12.
Application of lung ultrasound surface wave elastography in the evaluation of diffuse lung diseases
Kalra, Sanjay , Bartholmai, Brian J. , Zhang, Xiaoming

The Journal of the Acoustical Society of America | November 28, 2023 | Volume: 154 | Issue: 4_supplement | Pages: A221-A221

10.1121/10.0023342 Get It

The evaluation of diffuse lung disease invariably involves chest computerized tomography (CT). The detailed information obtained is often equivalent to that from lung biopsies. It, however, involves exposure to ionising radiation which limits its repeated application in monitoring and follow up. Ultrasound techniques offer potentially safer/cheaper alternatives and lung ultrasound surface wave elastography (LUSWE) is a novel, noninvasive, and clinically feasible technique to quantify lung stiffness, an important biomechanical property that changes in diffuse fibrotic and infiltrative lung diseases. We have developed a sensitive, accurate and reproducible technique to measure changes in lung surface stiffness by using surface wave transmission speed and demonstrated its value in detecting and staging the degree of fibrosis in diffuse interstitial lung diseases, specifically idiopathic pulmonary fibrosis and progressive systemic sclerosis associated lung disease, as well as changes in heart failure. The technique consists of ultrasound detection of the propagation speed of a wave generated by the vibrations from an indenting shaker in multiple intercostal spaces to provide a representative assessment of both lungs. It offers the prospect of simple, radiation-free, repetitive assessment of changes in acute and chronic diffuse lung diseases with the potential for easy and rapid bedside use, all important considerations in clinical practice.
Voxel-Wise Comparison of Co-Registered Quantitative CT and Hyperpolarised Gas Diffusion-Weighted MRI Measurements in IPF
Chan, Ho‐Fung , Weatherley, Nicholas , Biancardi, Alberto , Johns, Christopher S., Karwoski, Ronald A., Bartholmai, Brian J. , Bianchi, Stephen , Wild, Jim M. , Bartholmai, Brian J , Wild, Jim M , Johns, Christopher , Tahir, Bilal

Diagnostics | November 21, 2023 | Volume: 13 | Issue: 23 | Pages: 3497

10.3390/diagnostics13233497 Get It

The patterns of idiopathic pulmonary fibrosis (IPF) lung disease that directly correspond to elevated hyperpolarised gas diffusion-weighted (DW) MRI metrics are currently unknown. This study aims to develop a spatial co-registration framework for a voxel-wise comparison of hyperpolarised gas DW-MRI and CALIPER quantitative CT patterns. Sixteen IPF patients underwent 3He DW-MRI and CT at baseline, and eleven patients had a 1-year follow-up DW-MRI. Six healthy volunteers underwent 129Xe DW-MRI at baseline only. Moreover, 3He DW-MRI was indirectly co-registered to CT via spatially aligned 3He ventilation and structural 1H MRI. A voxel-wise comparison of the overlapping 3He apparent diffusion coefficient (ADC) and mean acinar dimension (LmD) maps with CALIPER CT patterns was performed at baseline and after 1 year. The abnormal lung percentage classified with the LmD value, based on a healthy volunteer 129Xe LmD, and CALIPER was compared with a Bland–Altman analysis. The largest DW-MRI metrics were found in the regions classified as honeycombing, and longitudinal DW-MRI changes were observed in the baseline-classified reticular changes and ground-glass opacities regions. A mean bias of −15.3% (95% interval −56.8% to 26.2%) towards CALIPER was observed for the abnormal lung percentage. This suggests DW-MRI may detect microstructural changes in areas of the lung that are determined visibly and quantitatively normal by CT.
Assessment of the Inter-observer Variability of the Radiomic Tools: BRODERS (Benign vs aggressive nODule Evaluation using Radiomic Stratification) and SILA (Score Indicative of Lung cancer Aggression) to Classify Lung Nodules
Al-Ghoula, Faysal, FALDE, SAMUEL D, Rajagopalan, Srinivasan, Maldonado, Fabien , Peikert, Tobias, Bartholmai, Brian J. , Bartholmai, Brian J , Patel, Khushbu

No container title available | May 24, 2023 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-2884203/v1 Get It

Abstract Introduction: While CT lung cancer screening reduces lung cancer-specific mortality, there are remaining challenges. Radiomic tools promiss to address these challenges, however, they are subject to interobserver variability if semi-automated segmentation techniques are used. Herein we report interobserver variability for two validated radiomic tools, BRODERS (Benign versus aggRessive nODule Evaluation using Radiomic Stratification) and CANARY (Computer-Aided Nodule Assessment and Risk Yield). Methods We retrospectively analyzed the CT images of 95 malignant lung nodules of the adenocarcinoma spectrum using BRODERS and CANARY. Cases were identified at Mayo Clinic (n = 45) and Vanderbilt University Medical Center and Nashville/Veteran Administration Tennessee Valley Health Care System (n = 50). Three observers with different training levels (medical student, internal medicine resident and thoracic radiology fellow) each performed lung nodule segmentation. All methods were carried out in accordance with relevant guidelines and regulations Results Interclass correlation coefficients (ICC) of 0.77, 0.98 and 0.97 for the average nodule volume, BRODERS cancer probability and Score Indicative of Lesion Aggression (SILA) which summarizes the distribution of the CANARY exemplars indicated good to excellent reliability, respectively. The dice similarity coefficient was 0.79 and 0.81 for the data sets from the two institutions. Conclusion: BRODERS and CANARY are robust radiomics tools with excellent interobserver variability. These tools are simple and reliable regardless the observer/operator’s level of training.
Impact of flexible noise control (FNC) image processing parameters on portable chest radiography
Kirby, Krystal , Ren, Liqiang , Daly, Timothy R., Tandon, Yasmeen K. , Bartholmai, Brian J. , Schueler, Beth A. , Long, Zaiyang , Kirby, Krystal M, Bartholmai, Brian J

Journal of Applied Clinical Medical Physics | November 2, 2022 | Volume: 23 | Issue: 12 | Pages: No page available

10.1002/acm2.13812 Get It

AbstractThere is a lack of understanding in the performance of flexible noise control (FNC) processing, which is used in digital radiography on a scanner vendor and has four parameters each involving multiple options. The aim of this study was to investigate the impact of FNC on portable chest imaging. An anthropomorphic chest phantom was imaged using a clinical chest program with 85 kV and five radiation dose levels at 40″ source‐to‐image distance with software‐based scatter reduction method. All images were processed without and with FNC. Noise analysis was performed in two regions of interest (ROI) on subtracted noise‐only images, and line profiles were generated through a lung‐rib interface. In addition, noise power spectra (NPS) analysis was performed in solid water phantoms of 10 and 20 cm thicknesses, using the same acquisition program and a range of dose levels. Last, feedback on retrospectively deidentified, reprocessed, and randomized clinical images from 20 portable chest exams was gathered from two thoracic radiologists. Noise reduction performances of FNC were demonstrated, with the level depending on specific FNC parameters, dose levels, ROI placement, and phantom sizes. Higher frequency textural patterns were revealed through the NPS analysis, which varied based on FNC parameters, dose levels, and phantom sizes. Overall, the vendor default parameter FGA0.5 yielded the highest noise reduction and textural artifacts. Radiologist feedback showed consistent preference of no FNC due to the presence of textural artifacts in the FNC‐processed images. An algorithm improvement to avoid introducing artifacts would be desired.