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Pirruccello, James P.

https://orcid.org/0000-0001-6088-4037

Mayo Clinic

Massachusetts General Hospital

Citations 2

Quantifying the phenome‐wide disease burden of obesity using electronic health records and genomics
Robinson, Jamie R. , Carroll, Robert J. , Bastarache, Lisa , Pirruccello, James P. , Mou, Zongyang , Wei, Wei‐Qi, Mentch, Frank , Crane, Paul K. , Hebbring, Scott J. , Crosslin, David R. , Rosenthal, Elisabeth A. , Stanaway, Ian B. , Petukhova, Lynn , Namjou‐Khales, Bahram, Zhang, Ge , Safarova, Mayya S., Walton, Nephi , Still, Christopher D. , Böttinger, Erwin P. , Loos, Ruth J. F. , Murphy, Shawn N. , Jarvik, Gail P. , Larson, Eric B. , Roden, Dan M. , Denny, Joshua C. , Safarova, Maya , Denny, Joshua C , Jarvik, Gail P , Loos, Ruth J F , Chen, Qingxia , Connolly, John J. , Gordon, Adam S., Hayes, M. Geoffrey , Wei, Wei , Jackson, Gretchen Purcell , Abumrad, Naji N. , Kullo, Iftikhar J. , Weng, Chunhua , Roden, Dan M. , Khera, Amit V.

Obesity | November 14, 2022 | Volume: 30 | Issue: 12 | Pages: 2477-2488

10.1002/oby.23561 Get It

AbstractObjectiveHigh BMI is associated with many comorbidities and mortality. This study aimed to elucidate the overall clinical risk of obesity using a genome‐ and phenome‐wide approach.MethodsThis study performed a phenome‐wide association study of BMI using a clinical cohort of 736,726 adults. This was followed by genetic association studies using two separate cohorts: one consisting of 65,174 adults in the Electronic Medical Records and Genomics (eMERGE) Network and another with 405,432 participants in the UK Biobank.ResultsClass 3 obesity was associated with 433 phenotypes, representing 59.3% of all billing codes in individuals with severe obesity. A genome‐wide polygenic risk score for BMI, accounting for 7.5% of variance in BMI, was associated with 296 clinical diseases, including strong associations with type 2 diabetes, sleep apnea, hypertension, and chronic liver disease. In all three cohorts, 199 phenotypes were associated with class 3 obesity and polygenic risk for obesity, including novel associations such as increased risk of renal failure, venous insufficiency, and gastroesophageal reflux.ConclusionsThis combined genomic and phenomic systematic approach demonstrated that obesity has a strong genetic predisposition and is associated with a considerable burden of disease across all disease classes.
How Will Machine Learning Inform the Clinical Care of Atrial Fibrillation?
Siontis, Konstantinos C. , Pirruccello, James P. , Philippakis, Anthony , Yao, Xiaoxi , Noseworthy, Peter A.

Circulation Research | June 18, 2020 | Volume: 127 | Issue: 1 | Pages: 155-169

10.1161/circresaha.120.316401 Get It

Machine learning applications in cardiology have rapidly evolved in the past decade. With the availability of machine learning tools coupled with vast data sources, the management of atrial fibrillation (AF), a common chronic disease with significant associated morbidity and socioeconomic impact, is undergoing a knowledge and practice transformation in the increasingly complex healthcare environment. Among other advances, deep-learning machine learning methods, including convolutional neural networks, have enabled the development of AF screening pathways using the ubiquitous 12-lead ECG to detect asymptomatic paroxysmal AF in at-risk populations (such as those with cryptogenic stroke), the refinement of AF and stroke prediction schemes through comprehensive digital phenotyping using structured and unstructured data abstraction from the electronic health record or wearable monitoring technologies, and the optimization of treatment strategies, ranging from stroke prophylaxis to monitoring of antiarrhythmic drug (AAD) therapy. Although the clinical and population-wide impact of these tools continues to be elucidated, such transformative progress does not come without challenges, such as the concerns about adopting black box technologies, assessing input data quality for training such models, and the risk of perpetuating rather than alleviating health disparities. This review critically appraises the advances of machine learning related to the care of AF thus far, their potential future directions, and its potential limitations and challenges.