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349 citation(s) found for "Sarkaria, Jann N".

Abstract B028: Systemic and CNS distributional pharmacokinetics of WSD0628, a novel radiosensitizer: Implications for the treatment of brain tumors
Xue, Zhiyi , Oh, Ju‐Hee , Le, Jiayan, Sarkaria, Jann S., Elmquist, William F. , Rathi, Sneha , Mladek, Ann C. , Xue, Zhiyi, Zhang, Wenjuan , Zhang, Wenqiu

Mayo Clinic

Cancer Research | March 4, 2024 | Volume: 84 | Issue: 5_Supplement_1 | Pages: B028-B028

10.1158/1538-7445.brain23-b028 Get It

Abstract Glioblastoma (GBM) is an aggressive and highly infiltrative brain tumor with poor prognosis. Radiation therapy induces DNA damage, and DNA damage response (DDR) pathways modulate resistance to radiation therapy. Inhibiting DDR pathways by targeting ATM, a key enzyme involved in the repair of DNA double strand breaks, leads to radiosensitization and enhances cytotoxicity. Clinical translation of radiosensitizers for GBM may be influenced by a lack of effective drug delivery across the blood brain barrier (BBB). The purpose of this study is to determine the key preclinical pharmacokinetic parameters and mechanisms that influence the CNS delivery of WSD0628, a novel ATM inhibitor. In vitro clonogenic survival assays using U251 GBM cells indicate that WSD0628 shows significant radiosensitization, with a >70% decrease in surviving colonies in the presence of 10nM or higher drug concentrations in combination with 2.5 to 10 Gy radiation as compared to radiation alone. We evaluated the systemic pharmacokinetics and CNS distribution of WSD0628 in FVB wild-type mice and FVB mice lacking Pgp and Bcrp (Mdr1a/b−/−Bcrp1−/−, triple knockout) after a 1, 5, 10 mg/kg intravenous (IV) or oral (PO) dose. Clearance decreased with increase in dose and a greater than dose proportional increase in exposure was observed. WSD0628 is rapidly absorbed and is bioavailable after oral administration. Tissue distribution coefficients were determined as the ratio of exposure in tissue to plasma (Kp = AUCtissue/AUCplasma). Kp,brain was 0.22 ± 0.05, and Kp, spinal cord was 0.30 ± 0.09 in the wild-type mice. For wild-type mice, Kp,uu,brain was 0.20 ± 0.05 and Kp,uu,spinal cord was 0.26 ± 0.08, determined by correcting for binding to CNS tissues and plasma. The brain distribution of WSD0628 was only modestly increased (1.4 times) in the triple knockout mice with Kp,brain of 0.32 ± 0.06 and Kp,spinal cord of 0.41 ± 0.08. Organ distribution of WSD0628 at steady-state was studied after intraperitoneal implantation of Alzet osmotic pumps primed to release WSD0628 at 7.5 ug/hr for 25 hours. Tissue distribution coefficients, determined by organ-to-plasma steady-state concentration ratios, were highest for liver and kidneys, followed by heart, lungs and CNS. Survival studies conducted in mice bearing orthotopic GBM patient derived xenografts show a significant improvement in survival in mice receiving a combination of WSD0628 and radiation as compared to radiation alone. In conclusion, WSD0628 is a robust radiosensitizer and has moderate brain penetration that is not limited by the efflux transporters Pgp and Bcrp. Based on preliminary efficacy studies in mice, WSD0628 shows potential for treatment of GBM tumors. Evaluations are underway to determine tumor free concentrations and quantification of corresponding biomarkers. Combining this knowledge of PK of WSD0628 with the dynamics of the targeted biological pathway will inform a PK-PD-efficacy model and predict effective dosage regimens for future preclinical and clinical trials. Citation Format: Sneha Rathi, Ann Mladek, Zhiyi Xue, Ju-Hee Oh, Wenjuan Zhang, Wenqiu Zhang, Jiayan Le, Jann S. Sarkaria, William F. Elmquist. Systemic and CNS distributional pharmacokinetics of WSD0628, a novel radiosensitizer: Implications for the treatment of brain tumors [abstract]. In: Proceedings of the AACR Special Conference on Brain Cancer; 2023 Oct 19-22; Minneapolis, Minnesota. Philadelphia (PA): AACR; Cancer Res 2024;84(5 Suppl_1):Abstract nr B028.
Abstract B023: CNS and systemic pharmacokinetics of antibody-drug conjugate payloads through convection-enhanced delivery
Griffith, Jessica I. , Le, Jiayan, Porath, Kendra A. , Elmquist, William F. , Jain, Sonia , Bakken, Katrina K. , Sarkaria, Jann N.

Mayo Clinic

Cancer Research | March 4, 2024 | Volume: 84 | Issue: 5_Supplement_1 | Pages: B023-B023

10.1158/1538-7445.brain23-b023 Get It

Abstract Glioblastoma (GBM) is one of the most malignant central nervous system (CNS) tumors and accounts for more than 60% of primary brain tumors in adults [1]. While chemotherapy is a frequently employed treatment for GBM, its lack of specificity towards tumor cells leads to toxicity in healthy tissues. Antibody-drug conjugates (ADCs) are a prevalent targeted-drug delivery strategy that may enhance the therapeutic window. ADC development for GBM has progressed in recent years, yet recent clinical trials have thus far failed to demonstrate drug efficacy [2]. This is likely attributed to poor brain penetration and heterogeneous drug distribution within GBM [3]. Convection-enhanced delivery (CED) is an invasive delivery method that can achieve direct administration of therapeutics to brain tumors and potentially could be used to enhance the delivery and efficacy of ADCs. This study investigates the CNS and systemic pharmacokinetics and distribution of similar payload molecules following CED administration of two GBM-targeting ADCs, ABBV-221 and ABT-414. The ADC payloads are monomethyl auristatin E (MMAE) and monomethyl auristatin F (MMAF), respectively, and both are potent anti-tubulin toxins commonly used as warheads for ADCs. Both ADCs and free MMAE were administered as single doses to FVB mice via CED infusion or intraperitoneal (IP) injection. Plasma and brain samples were collected over 24 hours for ABBV-221 and 96 hours for ABT-414, and unconjugated payload molecules were quantified via LC-MS/MS analysis. The results showed that free (i.e., not bound to the targeting antibody) MMAE has a significantly higher exposure in brain compared to plasma when delivered via CED, and exposure in the right hemisphere was 10-fold higher than the left hemisphere, as the site of CED infusion was located in the right hemisphere for all trials. Similar results for MMAE payload were observed after the CED of ABBV-221. Systemic administration of ABBV-221 resulted in a nearly 100-fold decrease in unconjugated MMAE concentration in brain, indicating the poor brain penetration of the ADC. Similarly, following the CED of ABT-414, unconjugated payload concentration was the highest in right anterior brain among all brain regions, and plasma concentration was below the limit of quantification. Systemic injection of ABT-414 resulted in non-quantifiable payload concentrations in either brain or plasma samples. Taking these results as a whole, this study demonstrated significantly enhanced brain distribution of payload molecules from GBM-targeting ADCs following CED compared to systemic administration. The consistent payload delivery pattern observed in both ADCs further supports the potential of CED as an effective drug delivery method for the treatment of GBM. These findings highlight the promise of CED as a means to address the limitations of conventional chemotherapy and improve therapeutic outcomes in GBM treatment. 1. Sarkaria JN et al. Neuro Oncol. 2018; 20:184–91. 2. Lassman AB et al. Neuro Oncol. 2023; 25:339–50. 3. Marin B-M, et al. Neuro Oncol. 2021; 23:2042–53. Citation Format: Jessica I. Griffith, Jiayan Le, Kendra A. Porath, Sonia Jain, Katrina K. Bakken, Jann N. Sarkaria, William F. Elmquist. CNS and systemic pharmacokinetics of antibody-drug conjugate payloads through convection-enhanced delivery [abstract]. In: Proceedings of the AACR Special Conference on Brain Cancer; 2023 Oct 19-22; Minneapolis, Minnesota. Philadelphia (PA): AACR; Cancer Res 2024;84(5 Suppl_1):Abstract nr B023.
Abstract B025: How much is enough? BI-907828: a MDM2-p53 antagonist with limited BBB penetration but potent efficacy in glioblastoma
Oh, Ju‐Hee , Mlade, Ann, Elmquist, William F. , Zhang, Wenjuan , Vaubel, Rachael A. , Talele, Surabhi , Zhang, Wenqiu , Waller, Katie L. , Burgenske, Danielle M. , Sarkaria, Jann N.

Mayo Clinic

Cancer Research | March 4, 2024 | Volume: 84 | Issue: 5_Supplement_1 | Pages: B025-B025

10.1158/1538-7445.brain23-b025 Get It

Abstract Glioblastoma (GBM) is a highly aggressive and infiltrative primary malignant brain tumor. Current standard-of-care for newly diagnosed GBM patients includes maximal safe surgical resection, followed by concurrent radiation with temozolomide (TMZ), and adjuvant TMZ chemotherapy. However, despite aggressive treatments, GBM patients have a poor prognosis, with a median survival of 14.6 months and a 5-year survival rate of 6.8%. The p53 protein is a critical tumor suppressor in the cell cycle. The expression level of p53 is tightly controlled by its negative regulator, murine double minute 2 (MDM2). Amplification of the MDM2 gene, found in 14 % of GBMs, can inactivate p53, leading to loss of tumor suppressor functions. Therefore, we are investigating a potent MDM2 antagonist – BI-907828 in GBM to restore the p53 tumor suppressor function by inhibiting the p53/MDM2 interactions. We aim to evaluate the PK/PD of BI-907828 and demonstrate a new translational paradigm to rethink the “Delivery – Potency – Efficacy” relationship in drug discovery and development for central nervous system (CNS) tumors. BI-907828 was evaluated for cytotoxicity and the inhibition effect to MDM2-p53 pathway. Systemic PK and transport mechanisms controlling CNS distribution were evaluated in wild-type and transgenic mice that lack of efflux transporters P-gp and BCRP. BI-907828 unbound fractions in cell media, mouse and human specimens were determined by using rapid equilibrium dialysis to evaluate “active” concentrations. Efficacy measures, including survival and free drug distribution in tumor were assessed in mouse orthotopic GBM xenografts. BI-907828 exhibited potent inhibition of MDM2-p53 pathway and promoted cell death in GBM TP53 wild-type cells. MDM2-amplified cells are highly sensitive to BI-907828, with an effective unbound concentration of 0.1 nM. The CNS distribution of BI-907828 is limited by BBB efflux mediated by P-gp, resulting in a brain free partition coefficient Kp,uu of 0.002. Despite this seemingly “poor” BBB penetration, weekly administration of 10 mg/kg BI-907828 significantly extended median survival of orthotopic GBM108 xenografts to 218 days compared to 28 days with vehicle treatment (P < 0.0001). These studies show that efficacy of BI-907828 in orthotopic models is related to high potency even though its CNS distribution is severely limited by BBB efflux. In another words, in this case, this little drug distribution to brain is “enough” for extending survival of orthotopic GBM108 xenografts. Therefore, a comprehensive understanding of drug “Delivery – Potency – Efficacy” relationship is warranted in drug discovery development, especially for treatment of CNS tumors. Citation Format: Wenjuan Zhang, Rachael Vaubel, Juhee Oh, Ann Mlade, Surabhi Talele, Wenqiu Zhang, Katie Waller, Danielle Burgenske, Jann Sarkaria, William Elmquist. How much is enough? BI-907828: a MDM2-p53 antagonist with limited BBB penetration but potent efficacy in glioblastoma [abstract]. In: Proceedings of the AACR Special Conference on Brain Cancer; 2023 Oct 19-22; Minneapolis, Minnesota. Philadelphia (PA): AACR; Cancer Res 2024;84(5 Suppl_1):Abstract nr B025.
Abstract A004: GTP signaling links metabolism, DNA repair, and responses to genotoxic stress
Zhou, Weihua , Zhao, Zitong , Lin, Angelica , Xu, Jie , Wilder-Romans, Kari , Yang, Annabel , Solanki, Sumeet , Yao, Yangyang , Peterson, Erik , Korimerla, Navyateja , Werner, Christian K. , Liang, Jessica , Jacobson, Janna , O'Brien, Alexandra, Elaimy, Ameer L. , Ferris, Sean P. , Zhao, Shuang G. , Zhang, Shuqun , Morgan, Meredith A. , Lawrence, Theodore S. , Lyssiotis, Costas A. , Peters‐Golden, Marc , Wahl, Daniel , Lawrence, Theodore S , Lyssiotis, Costas A , Yang, John, Scott, Andrew J. , Li, Jing , Speth, Jennifer M. , Walker, Natalie , Kothari, Ayesha U. , Palavalasa, Sravya , Zhao, Shuang G , Sarkaria, Jann N. , Győrffy, Balázs , Al‐Holou, Wajd N. , Umemura, Yoshie , Shah, Yatrik M

Mayo Clinic

Cancer Research | March 4, 2024 | Volume: 84 | Issue: 5_Supplement_1 | Pages: A004-A004

10.1158/1538-7445.brain23-a004 Get It

Abstract OBJECTIVE: We sought to define the mechanisms by which purines regulate DNA repair and therapy response. METHODS: Phosphoproteomics was used to identify GTP-dependent (de)phosphorylation events after radiation (RT) and antibodies generated against novel sites. Animal models of glioblastoma (GBM) and normal tissues were used to assess DNA repair and treatment responses in vivo. RESULTS: Pharmacogenomic inhibition of GTP (but not ATP) synthesis sensitized GBM cells to RT by inhibiting the activity of non-homologous end joining, but not homologous recombination. We found a GTP-dependent RT-induced dephosphorylation event on Abl interactor 1 (Abi-1) serine 323 (S323) using phosphoproteomics. We generated a new antibody for p-Abi-1 (S323), validated its specificity, and confirmed that RT causes a GTP-dependent dephosphorylation of Abi-1 (S323). Knockout of Abi-1 slowed RT-induced double-strand break (DSB) repair, and this was rescued by re-expression of dephosphomimetic Abi-1 (S323A) but not phosphomimetic Abi-1 (S323D). Abi-1 canonically binds to G protein Rac1. Expression of constitutively active Rac1 promoted but dominant negative Rac1 blocked the dephosphorylation of Abi-1 (S323) and DSB repair. Knock-down or inhibition of protein phosphatase 5 reversed the GTP- and Rac1-mediated dephosphorylation of Abi-1 and DSB repair. In GBM PDX samples, p-Abi-1 (S323) levels negatively correlated with Rac1 activity and predicted favorable efficacy of genotoxic treatments. In orthotopic GBM mouse models, inhibiting Rac1 enhanced RT responses and suppressed Abi-1 (S323) dephosphorylation. Abi-1 knockout enhanced efficacy of genotoxic treatments and could be rescued by Abi-1 S323A (but not Abi-1 S323D) re-expression. This regulation is generalizable beyond brain cancer, as GTP supplementation promoted DNA repair and p-Abi1 (S323) dephosphorylation in non-malignant cells and protected mice from RT-mediated gastrointestinal injury and bleomycin-induced pulmonary fibrosis. CONCLUSION: The GTP-Rac1-PP5-Abi-1 signaling axis links metabolism and DNA repair. Disrupting this pathway can overcome cancer resistance to genotoxic therapy while augmenting it can mitigate genotoxic injury of normal tissues. Citation Format: Weihua Zhou, Zitong Zhao, Angelica Lin, John Yang, Jie Xu, Kari Wilder-Romans, Annabel Yang, Andrew J. Scott, Jing Li, Sumeet Solanki, Jennifer Speth, Natalie Walker, Ayesha U. Kothari, Yangyang Yao, Erik R. Peterson, Navyateja Korimerla, Christian K. Werner, Jessica Liang, Janna Jacobson, Sravya Palavalasa, Alexandra M Obrien, Ameer L Elaimy, Sean P. Ferris, Shuang G. Zhao, Jann N. Sarkaria, Balázs Győrffy, Shuqun Zhang, Wajd N. Al-Holou, Yoshie Umemura, Meredith A Morgan, Theodore S. Lawrence, Costas A. Lyssiotis, Marc Peters-Golden, Yatrik M. Shah, Daniel R. Wahl. GTP signaling links metabolism, DNA repair, and responses to genotoxic stress [abstract]. In: Proceedings of the AACR Special Conference on Brain Cancer; 2023 Oct 19-22; Minneapolis, Minnesota. Philadelphia (PA): AACR; Cancer Res 2024;84(5 Suppl_1):Abstract nr A004.
Aberrant ATM signaling and homology-directed DNA repair as a vulnerability of p53-mutant GBM to AZD1390-mediated radiosensitization
Chen, Jiajia , Laverty, Daniel J. , Bale, Ashwin , Carlson, Brett L. , Porath, Kendra A. , Bakken, Katrina K. , Burgenske, Danielle M. , Decker, Paul A. , Vaubel, Rachael A. , Eckel‐Passow, Jeanette E. , Elmquist, William F. , Bale, Ashwin , Carlson, Brett L , Porath, Kendra A , Bakken, Katrina K , Burgenske, Danielle M , Decker, Paul A. , Vaubel, Rachael A , Eckel-Passow, Jeanette E , Bhargava, Rohit , Lou, Zhenkun , Harley, Brendan A C , Nagel, Zachary D , Gupta, Shiv K , Sarkaria, Jann N , Laverty, Daniel J , Talele, Surabhi , Bhargava, Rohit , Lou, Zhenkun , Hamerlik, Petra , Harley, Brendan A.C. , Gupta, Shiv K. , Sarkaria, Jann N.

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Science Translational Medicine | February 14, 2024 | Volume: 16 | Issue: 734 | Pages: No page available

10.1126/scitranslmed.adj5962 | PMID 38354228 Get It

ATM is a key mediator of radiation response, and pharmacological inhibition of ATM is a rational strategy to radiosensitize tumors. AZD1390 is a brain-penetrant ATM inhibitor and a potent radiosensitizer. This study evaluated the spectrum of radiosensitizing effects and the impact of TP53 mutation status in a panel of IDH1 wild-type (WT) glioblastoma (GBM) patient-derived xenografts (PDXs). AZD1390 suppressed radiation-induced ATM signaling, abrogated G 0 -G 1 arrest, and promoted a proapoptotic response specifically in p53-mutant GBM in vitro. In a preclinical trial using 10 orthotopic GBM models, AZD1390/RT afforded benefit in a cohort of TP53 -mutant tumors but not in TP53 -WT PDXs. In mechanistic studies, increased endogenous DNA damage and constitutive ATM signaling were observed in TP53 -mutant, but not in TP53 -WT, PDXs. In plasmid-based reporter assays, GBM43 ( TP53 -mutant) showed elevated DNA repair capacity compared with that in GBM14 (p53-WT), whereas treatment with AZD1390 specifically suppressed homologous recombination (HR) efficiency, in part, by stalling RAD51 unloading. Furthermore, overexpression of a dominant-negative TP53 (p53DD) construct resulted in enhanced basal ATM signaling, HR activity, and AZD1390-mediated radiosensitization in GBM14. Analyzing RNA-seq data from TCGA showed up-regulation of HR pathway genes in TP53 -mutant human GBM. Together, our results imply that increased basal ATM signaling and enhanced dependence on HR represent a unique susceptibility of TP53 -mutant cells to ATM inhibitor–mediated radiosensitization.
Differential Distribution of the DNA-PKcs Inhibitor Peposertib Selectively Radiosensitizes Patient-derived Melanoma Brain Metastasis Xenografts
Ji, Jianxiong , Dragojevic, Sonja , Callaghan, Cameron M. , Smith, Emily J. , Talele, Surabhi , Connors, Margaret A. , Mladek, Ann C. , Hu, Zeng , Bakken, Katrina K. , Sarkaria, Paige P., Carlson, Brett L. , Decker, Paul A. , Rashid, Mohammad Abdur , Jang, Mi‐Hyeon , Eckel‐Passow, Jeanette E. , Elmquist, William F. , Zhang, Wenjuan , Connors, Margaret A , Mladek, Ann C , Hu, Zeng , Bakken, Katrina K , Sarkaria, Paige P , Carlson, Brett L , Burgenske, Danielle M , Decker, Paul A. , Rashid, Mohammad Abdur , Jang, Mi-Hyeon , Gupta, Shiv K , Eckel-Passow, Jeanette E , Elmquist, William F , Sarkaria, Jann N , Talele, Surabhi , Callaghan, Cameron M , Zhang, Wenjuan , Burgenske, Danielle M. , Gupta, Shiv K. , Sarkaria, Jann N.

Mayo Clinic

Molecular Cancer Therapeutics | January 22, 2024 | Volume: 23 | Issue: 5 | Pages: 662-671

10.1158/1535-7163.mct-23-0552 | PMID 38224566 Get It

Abstract Radioresistance of melanoma brain metastases limits the clinical utility of conventionally fractionated brain radiation in this disease, and strategies to improve radiation response could have significant clinical impact. The catalytic subunit of DNA-dependent protein kinase (DNA-PKcs) is critical for repair of radiation-induced DNA damage, and inhibitors of this kinase can have potent effects on radiation sensitivity. In this study, the radiosensitizing effects of the DNA-PKcs inhibitor peposertib were evaluated in patient-derived xenografts of melanoma brain metastases (M12, M15, M27). In clonogenic survival assays, peposertib augmented radiation-induced killing of M12 cells at concentrations ≥100 nmol/L, and a minimum of 16 hours exposure allowed maximal sensitization. This information was integrated with pharmacokinetic modeling to define an optimal dosing regimen for peposertib of 125 mpk dosed just prior to and 7 hours after irradiation. Using this drug dosing regimen in combination with 2.5 Gy × 5 fractions of radiation, significant prolongation in median survival was observed in M12-eGFP (104%; P = 0.0015) and M15 (50%; P = 0.03), while more limited effects were seen in M27 (16%, P = 0.04). These data support the concept of developing peposertib as a radiosensitizer for brain metastases and provide a paradigm for integrating in vitro and pharmacokinetic data to define an optimal radiosensitizing regimen for potent DNA repair inhibitors.
Differential H2O2 Metabolism among Glioblastoma Subtypes Confers Variable Responses to Pharmacological Ascorbate Therapy Combined with Chemoradiation
Zaher, Amira , Mapuskar, Kranti A. , Mapuskar, Kranti A , Zaher, Amira , Sarkaria, Jann N. , Spitz, Douglas R. , Petronek, Michael S. , Allen, Bryan G

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International Journal of Molecular Sciences | December 5, 2023 | Volume: 24 | Issue: 24 | Pages: 17158

10.3390/ijms242417158 | PMID 38138986 Get It

Glioblastoma (GBM), a highly lethal and aggressive central nervous system malignancy, presents a critical need for targeted therapeutic approaches to improve patient outcomes in conjunction with standard-of-care (SOC) treatment. Molecular subtyping based on genetic profiles and metabolic characteristics has advanced our understanding of GBM to better predict its evolution, mechanisms, and treatment regimens. Pharmacological ascorbate (P-AscH−) has emerged as a promising supplementary cancer therapy, leveraging its pro-oxidant properties to selectively kill malignant cells when combined with SOC. Given the clinical challenges posed by the heterogeneity and resistance of various GBM subtypes to conventional SOC, our study assessed the response of classical, mesenchymal, and proneural GBM to P-AscH−. P-AscH− (20 pmol/cell) combined with SOC (5 µM temozolomide and 4 Gy of radiation) enhanced clonogenic cell killing in classical and mesenchymal GBM subtypes, with limited effects in the proneural subtype. Similarly, following exposure to P-AscH− (20 pmol/cell), single-strand DNA damage significantly increased in classical and mesenchymal but not proneural GBM. Moreover, proneural GBM exhibited increased hydrogen peroxide removal rates, along with increased catalase and glutathione peroxidase activities compared to mesenchymal and classical GBM, demonstrating an altered H2O2 metabolism that potentially drives differential P-AscH− toxicity. Taken together, these data suggest that P-AscH− may hold promise as an approach to improve SOC responsiveness in mesenchymal GBMs that are known for their resistance to SOC.
STAG2 mutations regulate 3D genome organization, chromatin loops, and Polycomb signaling in glioblastoma multiforme
Waldman, Todd , Kim, Jun‐Sik , Xu, Wanying , Yang, Tianyi , Ya, Alvin , Tallon, Luke J. , Sadzewicz, Lisa , Harris, Brent T. , Sarkaria, Jann N. , Sarkaria, Jann N , Kim, Jun-Sik, Xu, Wanying, Jin, Fulai

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No container title available | December 1, 2023 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-3673198/v1 Get It

Abstract Inactivating mutations of genes encoding the cohesin complex are common in a wide range of human cancers. STAG2 is the most commonly mutated cohesin complex subunit. Here we report the impact of stable correction of endogenous, naturally occurring STAG2 mutations on gene expression, 3D genome organization, chromatin loops, and Polycomb signaling in glioblastoma multiforme (GBM). In two GBM cell lines, correction of their STAG2 mutations significantly altered the expression of ~10% of all expressed genes. Virtually all the most highly regulated genes were negatively regulated by STAG2 (i.e., expressed higher in STAG2-mutant cells than in STAG2-corrected cells), and one of them – HEPH – was regulated by STAG2 in uncultured GBM tumors as well. While STAG2 correction had little effect on large scale features of 3D genome organization (A/B compartments, TADs), STAG2 correction did alter thousands of individual chromatin loops, some of which controlled the expression of adjacent genes. Loops specific to STAG2-mutant cells, which were regulated by STAG1-containing cohesin complexes, were very large, supporting prior findings that STAG1-containing cohesin complexes have greater loop extrusion processivity than STAG2-containing cohesin complexes and suggesting that long loops may be a general feature of STAG2-mutant cancers. Finally, STAG2-regulated chromatin loops were enriched for the H3K27me3 Polycomb epigenetic mark, revealing that inactivation of STAG2 can activate Polycomb signaling in GBM, identifying a potential target for therapeutic intervention in STAG2-mutant tumors. Together, these findings illuminate the landscape of STAG2-regulated genes, A/B compartments, chromatin loops, and pathways in GBM, providing important clues into the largely still unknown mechanism of STAG2 tumor suppression.
Abstract A148: The radiosensitizing effects of the novel brain penetrant and potent ATM inhibitor WSD0628 in glioblastoma and melanoma patient derived xenografts
Xue, Zhiyi , Carlson, Brett L. , Hu, Zeng , Ott, Lauren L. , Elmquist, William F. , Xue, Zhiyi, Mladek, Ann C. , Rathi, Sneha , Burgenske, Danielle M. , Gupta, Shiv K. , Bakken, Katrina K. , Vaubel, Rachael A. , Zhong, Wei, Sarkaria, Jann N.

Mayo Clinic

Molecular Cancer Therapeutics | December 1, 2023 | Volume: 22 | Issue: 12_Supplement | Pages: A148-A148

10.1158/1535-7163.targ-23-a148 Get It

Abstract Radiation therapy (RT) is an important non-surgical clinical treatment for glioblastoma (GBM) and brain metastases, but inherent radio-resistance can limit the efficacy in many patients. The Ataxia Telangiectasia Mutated (ATM) protein critically regulates radiotherapy-mediated DNA damage repair pathways, and defects in this kinase can lead to profound radiosensitivity. In this study, the efficacy of the highly potent ATM inhibitor WSD0628 was evaluated in GBM and melanoma brain metastasis patient derived xenografts (PDXs). In short term explant cultures of three PDXs, WSD0628 robustly suppressed RT-induced autophosphorylation of ATM at serine 1981 and ATM-mediated phosphorylation of Chk2 at threonine-68 and KAP1 at serine-824, with maximal inhibition at 100 nM. Similarly, RT-induced gH2AX foci were significantly reduced when combined with WSD0628 in the GBM43 cells. Consistent with the importance of ATM in the DNA damage response after radiation, WSD0628 significantly increased the radiosensitivity of U251 cells in clonogenic survival assays (0nM vs. 30nM at 5Gy, p<0.01). To evaluate the optimal duration of drug exposure, WSD0628 was removed from U251 cells at various intervals following irradiation with 5 Gy. Using clonogenic survival as a readout, a 10-fold increase in cytotoxicity was observed with an 8 hour drug exposure, with progressively increasing cytotoxicity gains with exposures up to 24 hours. In vivo efficacy of WSD0628 was evaluated in multiple intracranial PDX models. In an initial dose-ranging study, robust radiosensitization was observed in GBM43 treated with 2 Gy x 5 fractions combined with 5 mg/kg WSD0628 (20 day survival extension) or 10mg/kg WSD0628 (39 day with 10 mg/kg; p<0.01 for both dose levels). Moreover, a single dose of 12.5 Gy combined with 10 mg/kg WSD0628 had profound impact on treatment efficacy in the melanoma brain metastasis M12 PDX: at 180 days post-treatment, all mice in the combination group were electively euthanized, while median survival for sham or RT alone was 17d and 49d, respectively. Histologic analysis identified large intracranial tumors in all sham and RT-only treated mice, but only a small accumulation of melanotic cells without obvious tumor in the combination-treated mice. Immunohistochemical staining of NeuN and GFAP in the combination-treated mice showed preserved neuronal density at the 180-post treatment timepoint and minimal reactive gliosis within the ‘tumor scar’. An ongoing study is comparing this single-fraction 12.5 Gy regimen to a 2.4 Gy x 10 fraction regimen alone or in combination with WSD0628. Collectively, this study demonstrates the potential for profound radiosensitizing effects of WSD0628 in combination without obvious neuronal toxicity and has provided the scientific rational for the first-in-man study of this combination in recurrent GBM (NCT05917145) at Mayo Clinic. Citation Format: Zhiyi Xue, Ann C. Mladek, Sneha Rathi, Danielle M. Burgenske, Shiv K. Gupta, Brett L. Carlson, Zeng Hu, Lauren L Ott, Katrina K. Bakken, Rachael A. Vaubel, William F Elmquist, Wei Zhong, Jann N Sarkaria. The radiosensitizing effects of the novel brain penetrant and potent ATM inhibitor WSD0628 in glioblastoma and melanoma patient derived xenografts [abstract]. In: Proceedings of the AACR-NCI-EORTC Virtual International Conference on Molecular Targets and Cancer Therapeutics; 2023 Oct 11-15; Boston, MA. Philadelphia (PA): AACR; Mol Cancer Ther 2023;22(12 Suppl):Abstract nr A148.
Abstract A002: The utility of pre-clinical trials in glioblastoma patient-derived xenografts (PDXs) models for informing clinical trial development of therapeutic strategies
Hu, Zeng, Carlson, Brett L. , Decker, Paul A. , Eckel‐Passow, Jeanette E. , Burgenske, Danielle M. , Mladek, Ann C. , Bakken, Katrina K. , Decker, Paul A. , Sarkaria, Jann N.

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Molecular Cancer Therapeutics | December 1, 2023 | Volume: 22 | Issue: 12_Supplement | Pages: A002-A002

10.1158/1535-7163.targ-23-a002 Get It

Abstract Large PDX collections provide broad representation of tumor genetics and are commonly used to evaluate the clinical potential of novel therapeutic strategies. In many solid malignancies, profound benefit in PDX preclinical studies has foreshadowed eventual FDA approval of clinically impactful therapeutics. With a lack of corresponding progress in glioblastoma (GBM), the value of PDX testing has been questioned. Mayo Clinic has developed 111 GBM PDXs from newly diagnosed (72 PDX) and recurrent (39 PDX) patients, and over the past 23 years, we have used this collection for extensive in vivo preclinical testing of 145 drugs in both orthotopic and heterotopic settings. As part of this work, the impact of standard of care therapy with temozolomide (TMZ) and bevacizumab was evaluated in orthotopic models using clinically relevant dosing regimens. For each animal study, the ratio of median survival for treated vs. control animals were used to define a ‘survival ratio’ as a normalized metric of benefit. TMZ efficacy was evaluated in 26 newly diagnosed GBM PDXs, with equal representation of MGMT methylated and unmethylated tumors. As expected, MGMT methylated PDXs were much more sensitive to TMZ as compared to unmethylated PDXs (median survival ratio 4.47 vs 1.48, respectively), and similar to clinical experience, 2 MGMT unmethylated PDXs were markedly sensitive to TMZ, while 1 MGMT methylated PDX was relatively resistant. In a more limited study, dose-dense vs. standard TMZ dosing was compared in 7 PDXs (4 MGMT methylated, 3 MGMT unmethylated). In a pooled analysis of all lines, both standard (HR=0.09; 95% CI: 0.06–0.14) and dose-dense TMZ therapy (HR=0.09; 95% CI: 0.06–0.14) were superior to vehicle controls (p<0.001). Similar to the clinical results in the Phase III randomized RTOG 0525 trial, survival with the dose-dense TMZ was no different than standard dosing (p=0.88, HR=0.98; 95% CI: 0.72-1.32). In an analysis of bevacizumab across 32 PDXs, mice were dosed once a week until moribund, and a minimum overall median survival benefit of 20% was used to define ‘responders’. Thirteen PDXs met this criterion, although the overall survival ratio among this subset was limited (range 1.21-1.65). Only 2 models had a 50% or greater survival benefit. Stratification by disease state (24 newly diagnosed vs 8 recurrent) showed equivalent performance (median survival benefit 1.13 for both). These results are consistent with the limited survival benefit observed with bevacizumab and the RTOG 0825 clinical trial. In summary, the results from these relatively inexpensive PDX studies demonstrate the potential of pre-clinical PDX trials to evaluate the extent of benefit and fraction of responsive PDXs to a novel therapeutic. If analyzed across an ‘adequate’ number of PDXs, these results potentially can be used to identify predictive biomarkers or to compare various treatment regimens prior to clinical testing. Citation Format: Danielle M Burgenske, Ann C Mladek, Katrina K Bakken, Zeng Hu, Brett L Carlson, Paul A Decker, Jeanette E Eckel-Passow, Jann N Sarkaria. The utility of pre-clinical trials in glioblastoma patient-derived xenografts (PDXs) models for informing clinical trial development of therapeutic strategies [abstract]. In: Proceedings of the AACR-NCI-EORTC Virtual International Conference on Molecular Targets and Cancer Therapeutics; 2023 Oct 11-15; Boston, MA. Philadelphia (PA): AACR; Mol Cancer Ther 2023;22(12 Suppl):Abstract nr A002.