Citations

Showing 10 of 108048 citations.

SCGAN: Sparse CounterGAN for Counterfactual Explanations in Breast Cancer Prediction
Zhou, Siqiong , Islam, Upala J., Pfeiffer, Nicholaus, Banerjee, Imon , Iquebal, Ashif Sikandar , Banerjee, Imon , Patel, Bhavika

Mayo Clinic

IEEE Transactions on Automation Science and Engineering | November 23, 2023 | Volume: 21 | Issue: 3 | Pages: 2264-2275

10.1109/tase.2023.3333788 | PMID 40734689 Get It

Contributions of the microbiota to the systemic inflammatory response
Muske, Josey , Knoop, Kathryn A. , Knoop, Kathryn, Knoop, Kathryn A

Mayo Clinic

Microbiota and Host | November 23, 2023 | Volume: 1 | Issue: 1 | Pages: No page available

10.1530/mah-23-0018 | PMID 38872988 Get It

The health of the intestinal microbiota impacts tolerance at homeostasis and the strength of the inflammation response during acute bloodstream infections. A complete understanding of the feedback loop between systemic inflammation and dysregulation of the gut microbiota is necessary for inflammation management. Here we will review the many ways in which the microbiota can influence the systemic pro-inflammatory response. Short-chain fatty acids, produced through the microbial metabolism of dietary fibers, can suppress inflammation systemically; in the absence of a balanced diet or disruption of the microbiota through antibiotics, there is disrupted metabolite production, leading to systemic inflammation. Dysbiosis or inflammation in the intestines can lead to a breakdown of the sturdy intestinal–epithelial barrier. When this barrier is perturbed, immunogenic lipopolysaccharides or extracellular vesicles enter the bloodstream and induce excessive inflammation. Necessary clinical treatments, such as antifungals or antibacterials, induce microbiota dysregulation and thus increased risk of endotoxemia; though probiotics may aid in improving the microbiota health and have been shown to deflate inflammation during sepsis. Within this complicated relationship: What is in control, the dysbiotic microbiota or the systemic inflammation?
Hybrid Oncocytic Tumors (HOTs) in Birt-Hogg-Dubé Syndrome Patients—A Tale of Two Cities
Mannan, Rahul , Zhang, Yuping , Chinnaiyan, Anya, Rangaswamy, Roshni, Chugh, Seema , Cao, Xuhong , Hafez, Khaled S., Vaishampayan, Ulka N. , McKenney, Jesse K. , Gupta, Sounak , Tretiakova, Maria , Argani, Pedram , Mehra, Rohit , Vaishampayan, Ulka , Tretiakova, Maria S , Wang, Xiaoming , Su, Fengyun , Wang, Rui , Skala, Stephanie L. , Picken, Maria M. , Alaghehbandan, Reza , Chinnaiyan, Arul , Dhanasekaran, Saravana Mohan

Mayo Clinic

American Journal of Surgical Pathology | November 23, 2023 | Volume: 48 | Issue: 2 | Pages: 163-173

10.1097/pas.0000000000002152 | PMID 37994665 Get It

Birt-Hogg-Dubé (BHD) syndrome is associated with an increased risk of multifocal renal tumors, including hybrid oncocytic tumor (HOT) and chromophobe renal cell carcinoma (chRCC). HOT exhibits heterogenous histologic features overlapping with chRCC and benign renal oncocytoma, posing challenges in diagnosis of HOT and renal tumor entities resembling HOT. In this study, we performed integrative analysis of bulk and single-cell RNA sequencing data from renal tumors and normal kidney tissues, and nominated candidate biomarkers of HOT, L1CAM, and LINC01187, which are also lineage-specific markers labeling the principal cell and intercalated cell lineages of the distal nephron, respectively. Our findings indicate the principal cell lineage marker L1CAM and intercalated cell lineage marker LINC01187 to be expressed mutually exclusively in a unique checkered pattern in BHD-associated HOTs, and these 2 lineage markers collectively capture the 2 distinct tumor epithelial populations seen to co-exist morphologically in HOTs. We further confirmed that the unique checkered expression pattern of L1CAM and LINC01187 distinguished HOT from chRCC, renal oncocytoma, and other major and rare renal cell carcinoma subtypes. We also characterized the histopathologic features and immunophenotypic features of oncocytosis in the background kidney of patients with BHD, as well as the intertumor and intratumor heterogeneity seen within HOT. We suggest that L1CAM and LINC01187 can serve as stand-alone diagnostic markers or as a panel for the diagnosis of HOT. These lineage markers will inform future studies on the evolution and interaction between the 2 transcriptionally distinct tumor epithelial populations in such tumors.
Clinical Data Do Not Reliably Predict Duodenal Histology at Follow-up in Celiac Disease
Patel, Natalie, Leffler, Daniel A. , Mulder, Chris J. , Elli, Luca , Gan, Geliang , Atsawarungruangkit, Amporn, Kuijpers, Karel C., Gobbo, Alessandro Del , Goldsmith, Jeffrey D. , Hintze, Zach, Pacheco, M. Cristina, Vieth, Michael , Melcher, Bálint , Pai, Rish K. , Hart, John , Olivas, Andrea D. , Naini, Bita V. , Meyerson, Cherise, Choi, Won‐Tak , Kakar, Sanjay , Westerhoff, Maria , Cheng, Jerome , Gopal, Purva , Hammer, Suntrea T.G. , Prats, Mariana Moreno, Bronner, Mary P. , Robert, Marie E. , Pai, Rish, Elli, Luca , Al-Toma, Abdulbaqi A. , Patil, Pallavi, Salomao, Marcela , Hart, John A L , Kakar, Sanjay

Mayo Clinic

American Journal of Surgical Pathology | November 23, 2023 | Volume: 48 | Issue: 2 | Pages: 212-220

10.1097/pas.0000000000002150 | PMID 37994653 Get It

Validated nonbiopsy methods to assure duodenal mucosal healing in celiac disease are lacking, yet ongoing mucosal injury is associated with anemia, osteoporosis, and lymphoma. Most providers utilize clinical data as surrogates of mucosal status to avoid additional esophagogastroduodenoscopy. The reliability of such surrogates to predict mucosal recovery has been incompletely evaluated. The aim of this study was to rigorously assess patterns of histologic mucosal recovery at follow-up in celiac disease and to correlate findings with clinical data. Gastrointestinal pathologists from 13 centers evaluated initial and follow-up duodenal biopsies from 181 celiac disease patients. Marsh scores and intraepithelial lymphocytes (IELs)/100 enterocytes were assessed blindly. Histology at follow-up was correlated with symptoms, immunoglobulin A anti–tissue transglutaminase titers and gluten-free diet adherence. Fifty-six/181 (31%) patients had persistent villous blunting and 46/181 (25%) patients had just persistently elevated IELs at follow-up, with only 79/181 (44%) patients having complete histologic remission. IEL normalization (82/181; 45%) lagged villous recovery (125/181;69%). In a minority of patients, villous blunting was limited to proximal duodenal biopsies. No correlation was found between Marsh scores and symptoms, normalization of immunoglobulin A anti–tissue transglutaminase serology, or diet adherence. Children showed greater recovery of Marsh score (P<0.001) and IELs (P<0.01) than adults. Persistent mucosal injury is common in celiac disease, with discordant villous/IEL normalization. Pathologist awareness of expected findings in celiac disease follow-up biopsies, including their frequent lack of correlation with clinical data, is important for patient management, and has implications for eligibility criteria for therapeutics currently in development.
Hepatic Artery Infusion Pump Chemotherapy for Colorectal Liver Metastases: What Does the Colorectal Surgeon Need to Know?
Zhang, Chi , Thiels, Cornelius A.

Mayo Clinic

Diseases of the Colon & Rectum | November 23, 2023 | Volume: 67 | Issue: 2 | Pages: 200-204

10.1097/dcr.0000000000003160 | PMID 37994462 Get It

BrAIST-Calc: Prediction of Individualized Benefit From Bracing for Adolescent Idiopathic Scoliosis
Dolan, Lori A. , Weinstein, Stuart L. , Dobbs, Matthew B. , Flynn, John M. , Halsey, Matthew F. , Hresko, M. Timothy , Krengel, Walter F. , Mehlman, Charles T. , Milbrandt, Todd A. , Price, Nigel, Schmitz, Michael L. , Song, Kit M., Talwalkar, Vishwas, Weinstein, Stuart L , Green, Daniel W , Newton, Peter O. , Sanders, James O , Schwend, Richard M. , Shah, Suken A.

Mayo Clinic

Spine | November 23, 2023 | Volume: 49 | Issue: 3 | Pages: 147-156

10.1097/brs.0000000000004879 | PMID 37994691 Get It

Study Design. Prospective multicenter study data were used for model derivation and externally validated using retrospective cohort data. Objective. Derive and validate a prognostic model of benefit from bracing for adolescent idiopathic scoliosis (AIS). Summary of Background Data. The Bracing in Adolescent Idiopathic Scoliosis Trial (BrAIST) demonstrated the superiority of bracing over observation to prevent curve progression to the surgical threshold; 42% of untreated subjects had a good outcome, and 28% progressed to the surgical threshold despite bracing, likely due to poor adherence. To avoid over-treatment and to promote patient goal setting and adherence, bracing decisions (who and how much) should be based on physician and patient discussions informed by individual-level data from high-quality predictive models. Materials and Methods. Logistic regression was used to predict curve progression to <45° at skeletal maturity (good prognosis) in 269 BrAIST subjects who were observed or braced. Predictors included age, sex, body mass index, Risser stage, Cobb angle, curve pattern, and treatment characteristics (hours of brace wear and in-brace correction). Internal and external validity were evaluated using jackknifed samples of the BrAIST data set and an independent cohort (n=299) through estimates of discrimination and calibration. Results. The final model included age, sex, body mass index, Risser stage, Cobb angle, and hours of brace wear per day. The model demonstrated strong discrimination ( c -statistics 0.83–0.87) and calibration in all data sets. Classifying patients as low risk (high probability of a good prognosis) at the probability cut point of 70% resulted in a specificity of 92% and a positive predictive value of 89%. Conclusion. This externally validated model can be used by clinicians and families to make informed, individualized decisions about when and how much to brace to avoid progression to surgery. If widely adopted, this model could decrease overbracing of AIS, improve adherence, and, most importantly, decrease the likelihood of spinal fusion in this population.
A secondary daily persistent headache from onset with underlying nutcracker physiology and spinal epidural venous congestion: case series with lumbar vein embolization as a therapeutic approach
Rozen, Todd D. , Devcic, Zlatko , Lewis, Andrew R. , Toskich, Beau , Toskich, Beau B. , Sandhu, Sukhwinder J.S. , Erben, Young

Mayo Clinic

Therapeutic Advances in Neurological Disorders | November 23, 2023 | Volume: 16 | Issue: No issue available | Pages: No page available

10.1177/17562864231213243 | PMID 38021477 Get It

The authors have published on a unique subset of patients whose headaches worsened in the Trendelenburg position and who on time-resolved MR angiography demonstrated left renal vein compression (nutcracker physiology) with retrograde left second lumbar vein (L2LV) flow and regional spinal epidural venous plexus (EVP) congestion. We hypothesized that the spinal EVP congestion subsequently causes a secondary congestion of the cerebral venous system, which then leads to an elevation of CSF pressure above that individuals CSF pressure set point. This results in a daily headache from onset. Thus, eliminating the spinal EVP could conceivably improve or eliminate the manifested headache syndrome. We now present a case series of four patients with long-term follow-up utilizing lumbar vein coil embolization as a new therapeutic approach. In each patient, the MR angiography findings were verified by catheter-based venography. Treatment consisted of endovascular embolization of the second lumbar vein. Four patients have had coil embolization of which three are 1 year or longer from their procedure while one is 10 months posttreatment. All patients were women. Duration of daily headache prior to embolization ranged from 4 to 8 years. Post-embolization: Three patients are either headache free or 90–95% improved with substantial pain free time. There were no procedure-related complications. Our results suggest that embolization of L2LV in a specific patient population with nutcracker physiology may substantially improve head pain issues. This is a minimally invasive outpatient technique with no apparent side effects.
Cardiac-Targeting Peptide: From Discovery to Applications
Sahagun, Daniella, Zahid, Maliha , Zahid, Maliha

Mayo Clinic

Biomolecules | November 23, 2023 | Volume: 13 | Issue: 12 | Pages: 1690

10.3390/biom13121690 | PMID 38136562 Get It

Despite significant strides in prevention, diagnosis, and treatment, cardiovascular diseases remain the number one cause of mortality in the United States, with rates climbing at an alarming rate in the developing world. Targeted delivery of therapeutics to the heart has been a lofty goal to achieve with strategies ranging from direct intra-cardiac or intra-pericardial delivery, intra-coronary infusion, to adenoviral, lentiviral, and adeno-associated viral vectors which have preference, if not complete cardio-selectivity, for cardiac tissue. Cell-penetrating peptides (CPP) are 5–30-amino-acid-long peptides that are able to breach cell membrane barriers while carrying cargoes up to several times their size, in an intact functional form. Identified nearly three decades ago, the first of these CPPs came from the HIV coat protein transactivator of transcription. Although a highly efficient CPP, its clinical utility is limited by its robust ability to cross any cell membrane barrier, including crossing the blood–brain barrier and transducing neuronal tissue non-specifically. Several strategies have been utilized to identify cell- or tissue-specific CPPs, one of which is phage display. Using this latter technique, we identified a cardiomyocyte-targeting peptide (CTP) more than a decade ago, a finding that has been corroborated by several independent labs across the world that have utilized CTP for a myriad of different purposes in pre-clinical animal models. The goal of this publication is to provide a comprehensive review of the identification, validation, and application of CTP, and outline its potential in diagnostic and therapeutic applications especially in the field of targeted RNA interference.
AfricaSTEMI Live! 2023—a unique learning experience
Gamra, Habib , Jeilan, Mohamed , Gersh, Bernard J.

Mayo Clinic

European Heart Journal | November 23, 2023 | Volume: 45 | Issue: 3 | Pages: 154-155

10.1093/eurheartj/ehad767 | PMID 37991437 Get It

Attitudes and Experiential Factors Associated with Completion of mt-sDNA Test Kit for Colorectal Cancer Screening
Treiman, Katherine , Madson, Gabriel , Southwell, Brian G. , Helmueller, Leah, Alam, Shama, Gates, Carlye, Squiers, Linda , Zhu, Xuan , Treiman, Katherine , Gates, Carlye , Rutten, Lila J. Finney

Mayo Clinic

Journal of Patient Experience | November 23, 2023 | Volume: 10 | Issue: No issue available | Pages: No page available

10.1177/23743735231213765 | PMID 38026067 Get It

Colorectal cancer (CRC) is the third leading cause of cancer-related deaths in the United States. Despite the availability of multiple screening options, CRC screening is underutilized. We conducted a survey of patients (n = 2973) who were prescribed the multi-target stool DNA (mt-sDNA) screening test (commercialized as Cologuard ® and manufactured by Exact Sciences Corporation) to understand attitudes and experiences that influence test completion and likelihood of future test completion. Using exploratory factor analyses, we developed three scales: Perceived Effectiveness, Perceived Ease of Use, and Perceived Comfort.