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175 citation(s) found for "Doǧan, Ahmet".

Clinical Proteome Informatics Workbench Detects Pathogenic Mutations in Hereditary Amyloidoses
Dasari, Surendra , Theis, Jason D. , Vrana, Julie A. , Zenka, Roman M. , Zimmermann, Michael T. , Kocher, Jean‐Pierre , Highsmith, W. Edward, Kurtin, Paul J. , Vrana, Julie A. , Doǧan, Ahmet , Zimmermann, Michael T

Mayo Clinic

Journal of Proteome Research | March 21, 2014 | Volume: 13 | Issue: 5 | Pages: 2352-2358

10.1021/pr4011475 | PMID 24650283 Get It

Leukocyte cell-derived chemotaxin 2 (LECT2)–associated amyloidosis is a frequent cause of hepatic amyloidosis in the United States
Theis, Jason D. , Vrana, Julie A., Grogg, Karen L., Dasari, Surendra , Chandan, Vishal S. , Wu, Tsung‐Teh, Jiménez‐Zepeda, Víctor H. , Dispenzieri, Angela , Kurtin, Paul J. , Mereuta, Oana M, Mereuta, Oana Madalina , Law, Mark E. , Fonseca, Rafaël , Doǧan, Ahmet , Dispenzieri, Angela

Mayo Clinic

Blood | January 11, 2014 | Volume: 123 | Issue: 10 | Pages: 1479-1482

10.1182/blood-2013-07-517938 | PMID 24415538 Get It

Key Points Leukocyte cell-derived chemotaxin-2–associated amyloidosis (ALect2) is a common cause of systemic amyloidosis involving the liver. Recognition and accurate diagnosis of hepatic ALect2 amyloidosis is essential for accurate management of patients with hepatic amyloidosis.
Shotgun‐proteomics‐based clinical testing for diagnosis and classification of amyloidosis
Theis, Jason D. , Dasari, Surendra , Vrana, Julie A., Kurtin, Paul J. , Doǧan, Ahmet

Mayo Clinic

Journal of Mass Spectrometry | October 3, 2013 | Volume: 48 | Issue: 10 | Pages: 1067-1077

10.1002/jms.3264 | PMID 24130009 Get It

Shotgun proteomics technology has matured in the research laboratories and is poised to enter clinical laboratories. However, the road to this transition is sprinkled with major technical unknowns such as long‐term stability of the platform, reproducibility of the technology and clinical utility over traditional antibody‐based platforms. Further, regulatory bodies that oversee the clinical laboratory operations are unfamiliar with this new technology. As a result, diagnostic laboratories have avoided using shotgun proteomics for routine diagnostics. In this perspectives article, we describe the clinical implementation of a shotgun proteomics assay for amyloid subtyping, with a special emphasis on standardizing the platform for better quality control and earning clinical acceptance. This assay is the first shotgun proteomics assay to receive regulatory approval for patient diagnosis. The blueprint of this assay can be utilized to develop novel proteomics assays for detecting numerous other disease pathologies. Copyright © 2013 John Wiley & Sons, Ltd.
Exploring the amyloid proteome in immunoglobulin‐derived lymph node amyloidosis using laser microdissection/tandem mass spectrometry
D’Souza, Anita , Theis, Jason D. , Quint, Patrick, Kyle, Robert A. , Zeldenrust, Steven R., Vrana, Julie A. , Dispenzieri, Angela , Gertz, Morie A. , Vrana, Julie A. , Doǧan, Ahmet , D'Souza, Anita , Dispenzieri, Angela

Mayo Clinic

American Journal of Hematology | April 20, 2013 | Volume: 88 | Issue: 7 | Pages: 577-580

10.1002/ajh.23456 | PMID 23606017 Get It

Amyloidosis affecting lymph nodes (LN) may occur in the setting of systemic amyloidosis or as an entity localized to the site of production (peritumoral). Why some LN amyloid remains peritumoral is unknown. We speculated that the composition of amyloid in these two presentations differs. We analyzed the amyloid proteome in LN amyloid samples to identify differences between the systemic and peritumoral subtypes. In immunoglobulin‐derived LN amyloidosis (N = 26), 70% had heavy chain amyloid (AH or mixed AH/AL). True localized LN amyloidosis was rare, with only 2 patients without a monoclonal protein component. Nineteen patients (73%) had typical amyloid syndromes (100% of AL vs 67% of AH/AL, P = 0.02). A trend to improved survival for the AH/AL group in comparison to AL (median 5‐year survival 48 vs. 19 months, P = 0.06) was seen. Mass spectrometric amyloid analysis is a powerful tool for characterizing amyloid and may provide additional prognostic information. Am. J. Hematol. 88:577–580, 2013. © 2013 Wiley Periodicals, Inc.
FCGR2A and FCGR3A polymorphisms in classical Hodgkin lymphoma by Epstein–Barr virus status
Ghesquières, Hervé , Link, Brian K. , Maurer, Matthew J. , Cunningham, Julie M. , Novak, Anne J. , Larrabee, Beth R. , Allmer, Cristine, Ansell, Stephen M. , Cerhan, James R. , Doǧan, Ahmet , Slager, Susan L. , Habermann, Thomas M. , Maurer, Matthew , Cerhan, James R , Link, Brian K

Mayo Clinic

Leukemia & Lymphoma | April 19, 2013 | Volume: 54 | Issue: 11 | Pages: 2571-2573

10.3109/10428194.2013.796048 | PMID 23597143 Get It

Atypical generalized eruptive histiocytosis clonally related to chronic myelomonocytic leukemia with loss of Y chromosome
Shon, Wonwoo , Peters, Margot S. , Reed, Kurtis B., Ketterling, Rhett P. , Gibson, Lawrence E. , Doǧan, Ahmet , Ketterling, Rhett P

Mayo Clinic

Journal of Cutaneous Pathology | April 13, 2013 | Volume: 40 | Issue: 8 | Pages: 725-729

10.1111/cup.12168 | PMID 23639193 Get It

Generalized eruptive histiocytosis, described in 1963 by Winklemann and Muller, is a reactive, self‐healing form of non‐Langerhans histiocytosis. Rare cases of atypical generalized eruptive histiocytosis have been reported in patients with hematopoietic malignancy, but the biological relationship between the two disorders is not known. We report an 84‐year‐old man with chronic myelomonocytic leukemia who presented with coalescing erythematous papules and plaques on the posterior neck, ear and lower lip, followed by development of blast crisis. Skin biopsy revealed a thick band‐like dermal infiltrate of cells that exhibited morphologic features of macrophages or histiocytes and prominent elastolytic phagocytosis. These cells demonstrated a mature immunophenotype, expressing CD14 and CD68, with partial expression of CD13 but not CD1a, CD43, CD56, CD123, Langerin, or S‐100 protein. Karyotype and fluorescence in situ hybridization analyses showed loss of the Y chromosome in bone marrow and skin specimens, providing evidence of a clonal relationship between the cutaneous eruption and the underlying chronic myelomonocytic leukemia. The presence of the same clone in skin and bone marrow specimens from our patient supports the possibility that atypical generalized eruptive histiocytosis is a marker for underlying hematopoietic malignancy. Discovery of additional cases may shed further light on the pathogenesis of this rare entity.
Extramedullary myeloma whole genome sequencing reveals novel mutations in Cereblon, proteasome subunit G2 and the glucocorticoid receptor in multi drug resistant disease
Egan, Jan B. , Kortuem, K. Martin, Kurdoglu, Ahmet, Izatt, Tyler, Aldrich, Jessica, Reiman, Rebecca, Baker, Angela , Shi, Chang‐Xin, Schmidt, Jessica, Liang, Winnie S. , Craig, David W. , Carpten, John D. , Stewart, A. Keith, Phillips, L Taylor

Mayo Clinic

British Journal of Haematology | March 13, 2013 | Volume: 161 | Issue: 5 | Pages: 748-751

10.1111/bjh.12291 | PMID 23480694 Get It

P1-008  Defective immune homeostasis mechanisms in Celiac Disease (CD), in its progression to Refractory Celiac Disease (RCD) and transformation to Enteropathy-Associated T-Cell Lymphoma (EATL type 1).
Carreras, Joaquim , Hamoudi, Rifat , Howat, William , Lavergne‐Slove, Anne, Chuang, Shih Sung, Venkatraman, Lakshmi , Woodward, Jeremy , Gribben, John, Isaacson, Peter, Wyllie, Andrew H., Du, Ming‐Qing , Nakamura, Naoya , Tsuji, Noriko M. , Doǧan, Ahmet , Cerf–Bensussan, Nadine

Mayo Clinic

Japanese Journal of Clinical Immunology | February 27, 2013 | Volume: 35 | Issue: 4 | Pages: 330b-330b

10.2177/jsci.35.330b Get It

Androgen Deprivation Therapy Impact on Quality of Life and Cardiovascular Health, Monitoring Therapeutic Replacement
Trost, Landon , Şerefoğlu, Ege Can , Gökçe, Ahmet , Linder, Brian J. , Sartor, Alton Oliver, Hellstrom, Wayne J.G. , Linder, Brian J

Mayo Clinic

The Journal of Sexual Medicine | February 6, 2013 | Volume: 10 | Issue: Supplement_1 | Pages: 84-101

10.1111/jsm.12036 | PMID 23387914 Get It

ABSTRACTIntroductionAndrogen deprivation therapy (ADT) is commonly utilized in the management of both localized and advanced adenocarcinoma of the prostate. The use of ADT is associated with several adverse events, physical changes, and development of medical comorbidities/mortality.AimThe current article reviews known adverse events associated with ADT as well as treatment options, where available. Current recommendations and guidelines are cited for ongoing monitoring of patients receiving ADT.MethodsA PubMed search of topics relating to ADT and adverse outcomes was performed, with select articles highlighted and reviewed based on level of evidence and overall contribution.Main Outcome MeasuresReported outcomes of studies detailing adverse effects of ADT were reviewed and discussed. Where available, randomized trials and meta-analyses were reported.ResultsADT may result in several adverse events including decreased libido, erectile dysfunction, vasomotor symptoms, cognitive, psychological and quality of life impairments, weight gain, sarcopenia, increased adiposity, gynecomastia, reduced penile/testicular size, hair changes, periodontal disease, osteoporosis, increased fracture risk, diabetes and insulin resistance, hyperlipidemia, and anemia. The definitive impact of ADT on lipid profiles, cardiovascular morbidity/mortality, and all-cause mortality is currently unknown with available data. Treatment options to reduce ADT-related adverse events include changing to an intermittent treatment schedule, biophysical therapy, counseling, and pharmacotherapy.ConclusionsPatients treated with ADT are at increased risk of several adverse events and should be routinely monitored for the development of potentially significant morbidity/mortality. Where appropriate, physicians should reduce known risk factors and counsel patients as to known risks and benefits of therapy.
Comparison of Fluorescence In Situ Hybridization (FISH) and Dual-ISH (DISH) in the Determination of HER2 Status in Breast Cancer
Mansfield, Aaron S. , Sukov, William R. , Eckel‐Passow, Jeanette E. , Sakai, Yuta , Walsh, Frank J., Lonzo, Melissa L., Wiktor, Anne E., Jenkins, Robert B. , Doǧan, Ahmet , Mansfield, Aaron S

Mayo Clinic

American Journal of Clinical Pathology | January 25, 2013 | Volume: 139 | Issue: 2 | Pages: 144-150

10.1309/ajcp13gjaojayjmw | PMID 23355198 Get It

Abstract The determination of HER2 amplification is critical to selecting appropriate patients for HER2 targeted therapy in breast cancer. Dual in situ hybridization (DISH), an alternative to fluorescence in situ hybridization (FISH) and immunohistochemistry, is now available. To compare the FISH and DISH methods, we tested 251 samples enriched for common or difficult-to-assess HER2 anomalies. Seven samples failed DISH testing. There was a 64% (156/244) concordance between FISH and DISH by anomaly (κ = 0.58, 95% confidence interval, 0.51-0.65; P < .0001) and an 83% (203/244) concordance by amplification status (κ = 0.58; 95% confidence interval, 0.47-0.69; P < .0001). DISH resulted in lower estimates of HER2/ centromere 17 ratios than FISH, and many cases that were equivocal with FISH were normal with DISH. DISH did not detect any case with coamplification of HER2 and centromere 17. Using a cohort of difficult specimens, we observed less than 95% concordance between FISH and DISH. DISH may underestimate the HER2/chromosome 17 ratio, or FISH may overestimate this ratio.