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46 citation(s) found for "Vrana, Julie".

Imaging Mass Spectrometry‐Based Assessment of ER, PR, and HER2 Protein Expression in Breast Cancer
Gunji, Daigo , French, Amy J. , Sachdeva, Gunveen S. , Venkataraman, Shilpa , Joshi, Neha, Gao, Tianqi, Ramachandran, Sumankalai , Vrana, Julie A, Yagnik, Gargey , Yasir, Saba , Keeney, Michael, Olaleye, Olajide E, Mangalaparthi, Kiran K. , Olaleye, Olajide E. , Joshi, Neha , Rothschild, Kenneth J. , Lim, Mark J. , Pandey, Akhilesh

PROTEOMICS | March 8, 2026 | Volume: 26 | Issue: 5 | Pages: 6-12

10.1002/pmic.70110 | PMID 41744185 Get It

ABSTRACT Imaging mass spectrometry has made significant advancements in recent years owing to its ability to study the spatial localization and abundance of proteins, peptides, lipids, glycans, metabolites, and drugs. In this study, we employed an imaging mass spectrometry‐based workflow called MALDI‐IHC, which uses antibodies conjugated with photocleavable mass‐tags, to investigate the detection of estrogen receptor (ER), progesterone receptor (PR), and human epidermal growth factor receptor 2 (HER2) along with pan‐cytokeratin in formalin‐fixed paraffin‐embedded (FFPE) sections from cases with breast cancer. The expression of ER, PR, and HER2 was consistent with the clinical diagnosis based on conventional immunohistochemistry, lacking signal in triple‐negative cases and concordant signals in the cases that were classified as ER+/PR+/HER2+, ER+/PR+/HER2−, and ER−/PR−/HER2+ groups, respectively. In addition, the potential utility of a seconday antibody‐based MALDI‐IHC approach for HER2 expression was evaluated. In agreement with immunohistochemistry results, HER2 expression co‐localized within tumor regions in a HER2+ breast cancer case, while no expression was observed in a HER2− case. Collectively, these results highlight the potential of imaging mass spectrometry‐based MALDI‐IHC workflow for multiplexed detection of proteins in clinically relevant tissue sections.
Detection of Known and Novel Antigens in Pediatric Phospholipase A2 Receptor-Negative Membranous Nephropathy Cohort Using Laser Microdissection and Mass Spectrometry
Sethi, Sanjeev , Gowda, Diksha Mahadeva, Theis, Jason D. , Vrana, Julie A., Nasr, Samih H. , Fervenza, Fernando C., Ronco, Pierre, Haas, Mark , Vivarelli, Marina , Madden, Benjamin J. , Dêbiec, Hanna , Vargas-Brochero, Maria J. , Diomedi‐Camassei, Francesca , Fervenza, Fernando C., Ronco, Pierre Marie

Journal of the American Society of Nephrology | November 26, 2025 | Volume: 36 | Issue: 10S | Pages: No page available

10.1681/asn.2025yvxvmg7b Get It

Gallbladder amyloidosis is often unexpected and may have systemic implications
Dasari, Surendra , Theis, Jason D. , Dao, Linda N. , Howard, Matthew T., Larson, Daniel P. , Nasr, Samih H. , Chiu, April , Dalland, Joanna , Kourelis, Taxiarchis , Vrana, Julie A. , Hagen, Catherine E , Dao, Linda, Howard, Matthew, Dalland, Joanna C , Hagen, Catherine E. , Rech, Karen L. , Dispenzieri, Angela , Gertz, Morie A. , Muchtar, Eli , McPhail, Ellen Darcy

American Journal of Clinical Pathology | August 29, 2025 | Volume: 164 | Issue: 4 | Pages: 613-619

10.1093/ajcp/aqaf090 | PMID 40878366 Get It

Abstract Objective The aim of this study was to evaluate a large cohort of gallbladder amyloid cases to determine clinical and morphologic features. Methods Cholecystectomy specimens (N = 118) typed using proteomics-based techniques between 2008 and 2023 were identified. Clinical and morphologic features were reviewed. Results Six amyloid types were identified: ATTR (n = 63, 53.4%), AL (n = 46, 39.0%), AA (n = 4, 3.4%), AApoA1 (n = 2, 1.7%), ALECT2 (n = 2, 1.7%), and AEFEMP1 (n = 1, 0.8%). Amyloidogenic mutations were detected in 3 ATTR cases and 2 AApoA1 cases. Morphologic review (n = 26) revealed perimuscular vessel involvement in all cases. Amyloidosis was an unexpected diagnosis first made on the cholecystectomy specimen in half of the patients with clinical information (n = 10). All 9 patients with follow-up had evidence of systemic disease. In 2 patients, cholecystic involvement was initially missed and only retrospectively identified after the diagnosis of cardiac amyloidosis. Conclusions In patients with clinical data, amyloidosis was often unexpected, the gallbladder was commonly the first tissue sampled with amyloidosis, and all patients had systemic disease. Thorough review of cholecystectomy specimens with careful inspection of perimuscular vessels, coupled with a low threshold for ordering Congo red stain in elderly individuals and amyloid typing using a robust method such as proteomics, can prevent a delay in amyloid diagnosis and management.
Enhanced analytic methodology enables postmortem diagnosis of hereditary AApoAI amyloidosis
Hasadsri, Linda , Dasari, Surendra , Theis, Jason D. , Vrana, Julie A. , Johnson, M. L., Theis, Jeanne L. , Johnson, Mckinzie, Driscoll, Meghan , McPhail, Ellen Darcy , Rech, Karen L.

Amyloid | June 12, 2025 | Volume: 32 | Issue: 4 | Pages: 361-363

10.1080/13506129.2025.2515938 | PMID 40503944 Get It

Overview of the Characteristics of a Phospholipase A2 Receptor (PLA2R)-Negative Membranous Nephropathy Cohort
Piedade, Ana D., Mendes, Beatriz Branco, Fonseca, Francisca , Vrana, Julie A. , Theis, Jason D. , Soto, Karina , Sethi, Sanjeev , Inácio, António , Domingues, Patricia , Mendes, Beatriz Branco, Fervenza, Fernando C.

Journal of the American Society of Nephrology | October 28, 2024 | Volume: 35 | Issue: 10S | Pages: No page available

10.1681/asn.20244q7jqsh7 Get It

Clinicopathologic and Proteomic Characteristics of Intratubular Cytoplasmic AL-Amyloidosis
Rocha, Alejandro Best, Said, Samar M. , Santoriello, Dominick , Hou, Jean , Dasari, Surendra , Theis, Jason D. , Vrana, Julie A. , Markowitz, Glen S., D’Agati, Vivette D. , Nasr, Samih H. , Javaugue, Vincent , Batal, Ibrahim , Larsen, Christopher Patrick , McPhail, Ellen Darcy , Leung, Nelson

Journal of the American Society of Nephrology | May 17, 2024 | Volume: 33 | Issue: 11S | Pages: 377-378

10.1681/asn.20223311s1377b Get It

A Target Antigen-Based Approach to the Classification of Membranous Nephropathy
Bobart, Shane A. , Sethi, Sanjeev , Alexander, Mariam P., Nasr, Samih H. , Vrana, Julie A. , Said, Samar M. , Giesen, Callen D., Tehranian, Shahrzad , Lieske, John C. , Fervenza, Fernando C. , Vriese, An S. De

Journal of the American Society of Nephrology | May 17, 2024 | Volume: 31 | Issue: 10S | Pages: 589-590

10.1681/asn.20203110s1589d Get It

Investigation of the prognostic significance of CD5, CD117, EZH2, POU2F3, MTAP and BAP1 in thymic carcinoma.
Jenkins, Sarah M. , Vrana, Julie A. , Koepplin, Justin W. , Olivier, Kenneth R. , Cassivi, Stephen D. , Molina, Julian R. , Roden, Anja C. , Naso, Julia

Journal of Clinical Oncology | June 4, 2023 | Volume: 41 | Issue: 16_suppl | Pages: e20646-e20646

10.1200/jco.2023.41.16_suppl.e20646 Get It

e20646 Background: Thymic carcinomas tend to be aggressive malignancies with variable patterns of immunostaining. We aimed to assess whether the outcome of patients with thymic carcinomas was associated with immunoreactivity for conventional and emerging immunohistochemical markers of thymic carcinoma versus thymoma. Methods: Scoring of CD5, CD117, EZH2, POU2F3, BAP1, and MTAP immunohistochemistry on whole slide sections was compared to overall survival (OS) and progression free survival (PFS) for 36 thymic carcinoma patients, 28 of whom had complete tumor resection and 8 of whom had incomplete tumor resection. Results: Positive CD5 staining (defined as staining in ≥50% of tumor cells) was present in 13/36 cases (36%) and was significantly associated with longer OS (P = 0.005, hazard ratio = 0.18, CI 0.03-0.63) but not PFS (P = 0.14, hazard ratio = 0.48, CI 0.16-1.26), whereas the other markers were not significantly associated with OS or PFS. Positive CD5 staining remained significantly associated with OS in squamous cell carcinoma subgroup analysis (n = 23, HR = 0.17, CI 0.03-0.65, P = 0.009), patients who did not receive neo-adjuvant treatment (n = 24, HR = 0.21, CI 0.03-0.85, P = 0.03) and after adjusting for incomplete resection (HR = 0.20, CI0.03-0.73, P = 0.01), M1 stage (HR = 0.19, CI 0.03-0.71, P = 0.01) or neoadjuvant treatment (HR = 0.19, CI 0.03-0.71, P = 0.01) in bivariate models. Positive CD5 staining was also significantly associated with age ≥60 years, absence of neoadjuvant treatment, and positive POU2F3 staining. Conclusions: CD5 staining in ≥50% of tumor cells was significantly associated with longer OS for thymic carcinoma patients. Our study supports the notion that CD5 immunohistochemistry may have utility as a prognostic marker for thymic carcinomas.