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14 citation(s) found for "Saâda, Esma".

Aging-Related lncRNA Expression in Bipolar Disorder: Effects of Familial Liability and Childhood Trauma
Ekinci, Sultan , Yeşiloğlu, Buket , Fettahoğlu, İbrahim , ÜNLÜ, Canay PAMUKÇU , Celik, Hidayet Ece Arat, Şenol, Şevin Hun , Balaç, Sinem, Kaymakçı, Esma Çörekli, Kendirlioglu, Burcu Kok, Frye, Mark A. , Altıntaş, Merih , Çelik, Hidayet Ece Arat, Kaymakçı, Esma Çörekli , Kendirlioglu, Burcu Kok , Özerdem, Ayşegül , Ceylan, Deniz

No container title available | June 27, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.06.15.26355706 Get It

Abstract Introduction Bipolar disorder (BD) has been associated with increased medical burden and accelerated biological aging. Long non-coding RNAs (lncRNAs) regulate molecular pathways related to cellular senescence, inflammation, and telomere maintenance, which are implicated in both BD and aging. This study examined whether aging-related lncRNA expression reflects familial vulnerability or illness-specific effects, and whether childhood trauma and lifestyle factors modulate these signatures within a gene–environment framework. Methods In this cross-sectional study, expression levels of aging-related lncRNAs, including Antisense Non-coding RNA in the INK4 Locus (ANRIL), HOX Transcript Antisense Intergenic RNA (HOTAIR), Nuclear Enriched Abundant Transcript 1 (NEAT1), Taurine Upregulated Gene 1 (TUG1), Metastasis-Associated Lung Adenocarcinoma Transcript 1 (MALAT1), Growth Arrest-Specific 5 (GAS5), and Telomerase RNA Component (TERC), were measured in peripheral blood mononuclear cells (PBMCs) from individuals with bipolar disorder (BD) (n=68), siblings without BD diagnosis (SIB) (n=54), and healthy controls (HC) (n=70) using quantitative reverse transcription polymerase chain reaction (RT-qPCR). Childhood trauma and lifestyle were assessed using the Childhood Trauma Questionnaire (CTQ) and the Healthy Lifestyle Profile II (HPLP-II). Principal component analysis generated a composite aging-related lncRNA factor. Results At the individual transcript level, NEAT1 and TERC were elevated, whereas GAS5 was reduced, in both BD and SIB relative to HC. The aging-related lncRNA composite score was higher in BD and SIB than in HC (F = 7.315, p = 0.001). Familial liability to BD (presence vs. absence of familial liability ) showed a significant main effect on the composite score (F(1,182)=8.18, p=0.005) and interacted with childhood trauma (F(1,182)=10.14, p=0.002). In multivariable models, total CTQ and physical neglect were independently associated with lower composite scores, while familial liability remained a positive predictor (all p<0.001). Conclusions Aging-related lncRNA alterations mark familial vulnerability to BD and are shaped by childhood trauma within a gene–environment interaction framework.
Early Removal of Ureteral Stents When Attached to the Foley Catheter in Living Donor Kidney Transplant Recipients Reduces Urinary Tract Infections
Lam, Jenny , Mahgoub, Mohammed, Kesik, Esma, Smith, Byron H. , Ovdat, Esther , Rebolledo, Patricia , Bunn, Weslyn, Reddy, Kunam S. , Perry, Dana K. , Prieto, Mikel , Nyberg, Scott L. , Elali, Ibrahim, Kesik, Esma , Smith, Byron , Jadlowiec, Caroline , Mao, Shennen, Perry, Dana, Bentall, Andrew , Schinstock, Carrie , Nyberg, Scott, Stegall, Mark D , Elali, Ibrahim , Jadlowiec, Caroline C. , Mao, Shennen A. , Bentall, Andrew , Schinstock, Carrie A. , Stegall, Mark D.

Clinical Transplantation | September 24, 2025 | Volume: 39 | Issue: 10 | Pages: No page available

10.1111/ctr.70329 | PMID 40988593 Get It

ABSTRACT Background Ureteral stents are commonly placed during kidney transplantation (KT) to mitigate urologic complications. The objective of this study was to compare clinical outcomes in KT recipients with either early stent removal when attached to the Foley catheter or late removal via cystoscopy when unattached. Methods We conducted a multi‐center retrospective analysis of consecutive living donor KT patients (8/18/21‐4/21/23) stratified into Foley‐attached and unattached stent groups. Outcomes assessed were ureteral stricture, urine leaks, UTIs at 90 days and allograft failure and BKV DNAemia (BK virus DNAemia) at 1 year. Data are reported as mean and standard deviation. Results Among 247 patients with attached and 260 with unattached stents, baseline demographics (age, sex, diabetes) were similar between groups. There was a difference in race (87.9% vs. 77.8% Caucasian; p = 0.004). Foley catheters remained longer in the attached group (3.7 ± 1.8 vs. 3.0 ± 2.0 days; p < 0.001), but stents were removed earlier (3.7 ± 1.8 vs. 21.9 ± 4.7 days; p < 0.001). Comparing attached versus unattached, there were no differences in ureteral stricture (0.4% vs. 1.5%; p = 0.197), urine leak (0.8% vs. 0.4%; p = 0.533), BKV DNAemia (17.7% vs. 16.9%; p = 0.616), or allograft failure (0% vs. 0.8%; p = 0.167). However, UTI incidence by 90 days was lower in the attached group (5.7% vs. 11.9% p = 0.013). Induction therapy differed significantly between groups, with Alemtuzumab more common in the unattached group (58.1% vs. 19.4%, p < 0.001), Basiliximab more common in the attached group (43.3% vs. 35.0%, p < 0.001), and Thymoglobulin more common in the attached group (36.0% vs. 6.9%, p < 0.001). Baseline steroid use was higher in the unattached group (81.9% vs. 57.9%, p < 0.001). Conclusion Early stent removal via connection to the Foley catheter had similarly low rates of ureteral complications while reducing urinary tract infections and avoiding cystoscopic removal.
Oncolytic Adenovirus Armed with a Novel Agonist of the CD137 Immune Checkpoint Stimulator Suppresses Tumor Growth
Ramos-González, Martín R. , Tarique, Mohammad , Batra, Lalit , Arguc, Feyza, Garza-Morales, Rodolfo , Shirwan, Haval , Yolcu, Esma S. , Gómez-Gutiérrez, Jorge G. , Garza-Morales, Rodolfo , Arguc, Feyza Nur

Vaccines | March 21, 2024 | Volume: 12 | Issue: 3 | Pages: 340

10.3390/vaccines12030340 | PMID 38543974 Get It

Natural 4-1BBL (CD137L) is a cell membrane-bound protein critical to the expansion, effector function, and survival of CD8+ T cells. We reported the generation of an active soluble oligomeric construct, SA-4-1BBL, with demonstrated immunoprevention and immunotherapeutic efficacy in various mouse tumor models. Herein, we developed an oncolytic adenovirus (OAd) for the delivery and expression of SA-4-1BBL (OAdSA-4-1BBL) into solid tumors for immunotherapy. SA-4-1BBL protein expressed by this construct produced T-cell proliferation in vitro. OAdSA-4-1BBL decreased cell viability in two mouse lung cancer cell lines, TC-1 and CMT64, but not in the non-cancerous lung MM14.Lu cell line. OAdSA-4-1BBL induced programmed cell death types I and II (apoptosis and autophagy, respectively), and autophagy-mediated adenosine triphosphate (ATP) release was also detected. Intratumoral injection of OAdSA-4-1BBL efficiently expressed the SA-4-1BBL protein in the tumors, resulting in significant tumor suppression in a syngeneic subcutaneous TC-1 mouse lung cancer model. Tumor suppression was associated with a higher frequency of dendritic cells and an increased infiltration of cytotoxic CD8+ T and NK cells into the tumors. Our data suggest that OAdSA-4-1BBL may present an efficacious alternative therapeutic strategy against lung cancer as a standalone construct or in combination with other immunotherapeutic modalities, such as immune checkpoint inhibitors.
GeneAI 3.0: Powerful, Novel, Generalized Hybrid and Ensemble Deep Learning Frameworks for miRNA Classification of species-specific Stationary Patterns from Nucleotides
Laird, John R. , Singh, Inder M. , Mantella, Laura E. , Saba, Luca , Suri, Jasjit S. , Singh, Jaskaran , Khanna, Narendra N. , Rout, Ranjeet Kumar , Singh, Narpinder , Kalra, Mannudeep K. , Johri, Amer M. , Isenović, Esma R. , Fouda, Mostafa M. , Fatemi, Mostafa , Suri, Jasjit S.

No container title available | July 27, 2023 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-3161256/v1 Get It

Abstract Background and Motivation: Due to the intricate relationship between the small non-coding ribonucleic acid (miRNA) sequences, the classification of miRNA species, namely Human, Gorilla, Rat, and Mouse is challenging. Previous methods are not robust and accurate. In this study, we present GeneAI 3.0 (AtheroPoint™, Roseville, CA, USA), a powerful, novel, and generalized method for extracting features from the fixed patterns of purines and pyrimidines in each miRNA sequence in ensemble paradigms in machine learning (EML) and convolutional neural network (CNN)-based deep learning (EDL) frameworks. Method: GeneAI 3.0 utilized five conventional (Entropy, Dissimilarity, Energy, Homogeneity, and Contrast), and three contemporary (Shannon entropy, Hurst exponent, Fractal dimension) features, to generate a compositefeature set from given miRNA sequences which were then passed into our ML and DL classification framework. A set of 11 new classifiers was designed consisting of five EML and six EDL for binary/multiclass classification. It was benchmarked against 9 solo ML (SML), 6 solo DL (SDL), 12 hybrid DL (HDL) models, resulting in a total of 11+27=38 models were designed. Four hypotheses were formulated and validated using explainable AI (XAI) as well as reliability/statistical tests. Results: The order of the mean performance using accuracy (ACC)/area-under-the-curve (AUC) of the 24 DL classifiers was: EDL>HDL>SDL. The mean performance of EDL models with CNN layers was superior to that without CNN layers by 0.73%/0.92%. Mean performance of EML models was superior to SML models with improvements of ACC/AUC by 6.24%/6.46%. EDL models performed significantly better than EML models, with a mean increase in ACC/AUC of 7.09%/6.96%. The GeneAI 3.0 tool produced expected XAI feature plots, and the statistical tests showed significant p-values. Conclusions: Ensemble models with composite features are highly effective and generalized models for effectively classifying miRNA sequences.
DeepABM: Scalable and Efficient Agent-Based Simulations Via Geometric Learning Frameworks - a Case Study For Covid-19 Spread and Interventions
Chopra, Ayush , Raskar, Ramesh , Subramanian, Jayakumar , Krishnamurthy, Balaji , Kingsley, Thomas C. , Gel, Esma S. , Romero‐Brufau, Santiago , Pasupathy, Kalyan S.

2021 Winter Simulation Conference (WSC) | February 23, 2022 | Volume: No volume available | Issue: No issue available | Pages: 1-12

10.1109/wsc52266.2021.9715507 Get It

Intelligent Teletriage and Personalized Routing to Manage Patient Access in a Neurosurgery Clinic
Kilinc, Derya, Gel, Esma S. , Demirtas, Aysegul

IISE Transactions on Healthcare Systems Engineering | April 26, 2021 | Volume: No volume available | Issue: No issue available | Pages: 1-31

10.1080/24725579.2021.1921081 Get It

Intelligence, educational attainment, and brain structure in those at familial high‐risk for schizophrenia or bipolar disorder
Zwarte, Sonja M. C. de , Brouwer, Rachel M. , Agartz, Ingrid , Alda, Martin , Alonso-Lana, Sílvia , Bearden, Carrie E. , Bonvino, Aurora , Bramon, Elvira , Buimer, Elizabeth E.L. , Canales‐Rodríguez, Erick J. , Cannon, Dara M. , Cannon, Tyrone D. , Caseras, Xavier , Chen, Qiang , Chung, Yoonho , Serna, Elena de la , Giorgio, Annabella Di , Eker, Çağdaş , Erk, Susanne , Fatjó‐Vilas, Mar , Fears, Scott C. , Foley, Sonya , Fullerton, Janice M. , Goghari, Vina M. , Goikolea, José Manuel , Goldman, Aaron L. , Gruber, Oliver , Hájek, Tomáš , Hawkins, Emma L. , Heinz, Andreas , Hıdıroğlu, Ceren , Hillegers, Manon H. J. , Houenou, Josselin , Pol, Hilleke E. Hulshoff , Hultman, Christina M., Johansson, Viktoria , Jönsson, Erik G. , Kane, Fergus , Kempton, Matthew J. , Kopeček, Miloslav , Krämer, Bernd , Lenroot, Rhoshel , Marcelis, Machteld , Mattay, Venkata S. , Meyer‐Lindenberg, Andreas , Mwangi, Benson , Nabulsi, Leila , Newport, Jason, Olman, Cheryl A. , Overs, Bronwyn J. , Özerdem, Ayşegül , Pergola, Giulio , Pomarol‐Clotet, Edith , Raduà, Joaquim , Ramsay, Ian S. , Roberts, Gloria , Salvador, Raymond , Sarıçiçek, Aybala , Sarró, Salvador , Simsek, Esma M., Şimşek, Fatma , Toulopoulou, Timothea , Vieta, Eduard , Walter, Henrik , Weinberger, Daniel R. , Whalley, Heather C. , Yalın, Nefize , Ching, Christopher R. K. , Thomopoulos, Sophia I. , Jahanshad, Neda , Thompson, Paul M. , Kahn, René S. , Haren, Neeltje E.M. van , de Zwarte, Sonja M C , Bramon, Elvira , Canales-Rodríguez, Erick J , Cannon, Tyrone D , Chung, Yoonho , Di Giorgio, Annabella , Doucet, Gaelle E , Eker, Mehmet Cagdas , Frangou, Sophia , Glahn, David C , Hajek, Tomas , Hulshoff Pol, Hilleke E , Johansson, Viktoria , Jönsson, Erik G , Koenis, Marinka M G , Kopecek, Miloslav , Krämer, Bernd , Michielse, Stijn , Pergola, Giulio , Pomarol-Clotet, Edith , Radua, Joaquim , Salvador, Raymond , Saricicek Aydogan, Aybala , Sarró, Salvador , Schofield, Peter R , Simsek, Fatma , Sponheim, Scott R , Sugranyes, Gisela , Vieta, E , Ching, Christopher R K , Thomopoulos, Sophia I , van Erp, Theo G M , Agartz, Ingrid , Buimer, Elizabeth E L , van Haren, Neeltje E M , Hillegers, Manon H J , Meyer-Lindenberg, Andreas , Walter, Henrik , Thompson, Paul M , Alda, Martin , Fullerton, Janice M , Ozerdem, Aysegul , Yalin, Nefize , Bertolino, Alessandro , Cahn, Wiepke , Castro‐Fornieles, Josefina , Bonnín, Caterina del Mar , Demro, Caroline , Frangou, Sophia , Gönül, Ali Saffet , Ingvar, Martin , Lawrie, Stephen M. , McDonald, Colm , Mitchell, Philip B , Moreno, Dolores Maria , Murray, Robin , Os, Jim van , Picchioni, Marco , Piguet, Camille , Richter, Anja , Schofield, Peter R. , Soares, Jair C. , Tronchin, Giulia , Wu, Mon‐Ju , Andreassen, Ole A.

Human Brain Mapping | October 7, 2020 | Volume: 43 | Issue: 1 | Pages: 414-430

10.1002/hbm.25206 | PMID 33027543 Get It

AbstractFirst‐degree relatives of patients diagnosed with schizophrenia (SZ‐FDRs) show similar patterns of brain abnormalities and cognitive alterations to patients, albeit with smaller effect sizes. First‐degree relatives of patients diagnosed with bipolar disorder (BD‐FDRs) show divergent patterns; on average, intracranial volume is larger compared to controls, and findings on cognitive alterations in BD‐FDRs are inconsistent. Here, we performed a meta‐analysis of global and regional brain measures (cortical and subcortical), current IQ, and educational attainment in 5,795 individuals (1,103 SZ‐FDRs, 867 BD‐FDRs, 2,190 controls, 942 schizophrenia patients, 693 bipolar patients) from 36 schizophrenia and/or bipolar disorder family cohorts, with standardized methods. Compared to controls, SZ‐FDRs showed a pattern of widespread thinner cortex, while BD‐FDRs had widespread larger cortical surface area. IQ was lower in SZ‐FDRs (d = −0.42,p = 3 × 10−5), with weak evidence of IQ reductions among BD‐FDRs (d = −0.23,p = .045). Both relative groups had similar educational attainment compared to controls. When adjusting for IQ or educational attainment, the group‐effects on brain measures changed, albeit modestly. Changes were in the expected direction, with less pronounced brain abnormalities in SZ‐FDRs and more pronounced effects in BD‐FDRs. To conclude, SZ‐FDRs and BD‐FDRs show a differential pattern of structural brain abnormalities. In contrast, both had lower IQ scores and similar school achievements compared to controls. Given that brain differences between SZ‐FDRs and BD‐FDRs remain after adjusting for IQ or educational attainment, we suggest that differential brain developmental processes underlying predisposition for schizophrenia or bipolar disorder are likely independent of general cognitive impairment.
Reply to Dr. Merry’s Letter to the Editor
Dilli, Esma, Dodick, David, Dodick, David W.

Cephalalgia | November 13, 2015 | Volume: 36 | Issue: 9 | Pages: 910-910

10.1177/0333102415616875 | PMID 26566934 Get It

Response to Letter to the Editor
Dilli, Esma, Dodick, David W.

Cephalalgia | May 15, 2015 | Volume: 35 | Issue: 11 | Pages: 1034-1035

10.1177/0333102415586067 | PMID 25978932 Get It

Occipital nerve block for the short-term preventive treatment of migraine: A randomized, double-blinded, placebo-controlled study
Dilli, Esma, Halker, Rashmi, Vargas, Bert B., Hentz, Joseph G. , Radam, Teresa, Rogers, Robert , Vargas, Bert, Hentz, Joseph, Dodick, David, Dodick, David W.

Cephalalgia | December 12, 2014 | Volume: 35 | Issue: 11 | Pages: 959-968

10.1177/0333102414561872 | PMID 25505035 Get It

Background Occipital nerve (ON) injections with corticosteroids and/or local anesthetics have been employed for the acute and preventive treatment of migraine for decades. However, to date there is no randomized, placebo-controlled evidence to support the use of occipital nerve block (ONB) for the prevention of migraine. Objective The objective of this article is to determine the efficacy of ONB with local anesthetic and corticosteroid for the preventive treatment of migraine. Participants and methods Patients between 18 and 75 years old with ICHD-II-defined episodic (> 1 attack per week) or chronic migraine (modified ICHD-II as patients with > 10 days with consumption of acute medications were permitted into the study) were randomized to receive either 2.5 ml 0.5% bupivacaine plus 0.5 ml (20 mg) methylprednisolone over the ipsilateral (unilateral headache) or bilateral (bilateral headache) ON or 2.75 ml normal saline plus 0.25 ml 1% lidocaine without epinephrine (placebo). Patients completed a one-month headache diary prior to and after the double-blind injection. The primary outcome measure was defined as a 50% or greater reduction in the frequency of days with moderate or severe migraine headache in the four-week post-injection compared to the four-week pre-injection baseline period. Results Thirty-four patients received active and 35 patients received placebo treatment. Because of missing data, the full analysis of 33 patients in the active and 30 patients in the placebo group was analyzed for efficacy. In the active and placebo groups respectively, the mean frequency of at least moderate (mean 9.8 versus 9.5) and severe (3.6 versus 4.3) migraine days and acute medication days (7.9 versus 10.0) were not substantially different at baseline. The percentage of patients with at least a 50% reduction in the frequency of moderate or severe headache days was 30% for both groups (10/30 vs nine of 30, Δ 0.00, 95% CI –0.22 to 0.23). Conclusions Greater ONB does not reduce the frequency of moderate to severe migraine days in patients with episodic or chronic migraine compared to placebo. The study was registered with ClinicalTrial.gov (NCT00915473).