Citations

Mayo Clinic

Clear

7716 citation(s) found for "Ma, Daniel".

P4‐338: Phylogenetic mapping of phased haplotype data for post‐GWAS mapping
Roses, Allen D., Crenshaw, Donna G., Saunders, Ann M. , Caselli, Richard J., Grossman, Iris , Burns, Daniel K., Lutz, Michael W. , Chiba‐Falek, Ornit

Alzheimer's & Dementia | January 17, 2012 | Volume: 7 | Issue: 4S_Part_24 | Pages: No page available

10.1016/j.jalz.2011.09.083 Get It

Can We Better Predict and Treat Urinary Incontinence After Prostatectomy?
Elliott, Daniel S.

Journal of Urology | January 15, 2012 | Volume: 187 | Issue: 3 | Pages: 789-790

10.1016/j.juro.2011.12.027 | PMID 22248524 Get It

P2‐191: Investigating the association between fasting serum glucose levels and cerebral metabolic rate for glucose in brain regions affected by Alzheimer's disease
Burns, Christine , Kaszniak, Alfred W., Lee, Wendy , Alexander, Gene E. , Bandy, Daniel, Fleisher, Adam , Caselli, Richard J. , Reiman, Eric M. , Chen, Kewei

Alzheimer's & Dementia | January 12, 2012 | Volume: 7 | Issue: 4S_Part_24 | Pages: No page available

10.1016/j.jalz.2011.09.024 Get It

Association of Obesity With DNA Mismatch Repair Status and Clinical Outcome in Patients With Stage II or III Colon Carcinoma Participating in NCCTG and NSABP Adjuvant Chemotherapy Trials
Foster, Nathan R. , Yoon, Harry H. , Smyrk, Thomas C. , Kim, George P., Allegra, Carmen J. , Yothers, Greg , Nikcevich, Daniel A., Sargent, Daniel J. , Sinicrope, Frank A. , Sargent, Daniel J , Yothers, Greg

Journal of Clinical Oncology | December 28, 2011 | Volume: 30 | Issue: 4 | Pages: 406-412

10.1200/jco.2011.39.2563 | PMID 22203756 Get It

PurposeAlthough the importance of obesity in colon cancer risk and outcome is recognized, the association of body mass index (BMI) with DNA mismatch repair (MMR) status is unknown.Patients and MethodsBMI (kg/m2) was determined in patients with TNM stage II or III colon carcinomas (n = 2,693) who participated in randomized trials of adjuvant chemotherapy. The association of BMI with MMR status and survival was analyzed by logistic regression and Cox models, respectively.ResultsOverall, 427 (16%) tumors showed deficient MMR (dMMR), and 630 patients (23%) were obese (BMI ≥ 30 kg/m2). Obesity was significantly associated with younger age (P = .021), distal tumor site (P = .012), and a lower rate of dMMR tumors (10% v 17%; P < .001) compared with normal weight. Obesity remained associated with lower rates of dMMR (odds ratio, 0.57; 95% CI, 0.41 to 0.79; P < .001) after adjusting for tumor site, stage, sex, and age. Among obese patients, rates of dMMR were lower in men compared with women (8% v 13%; P = .041). Obesity was associated with higher recurrence rates (P = .0034) and independently predicted worse disease-free survival (DFS; hazard ratio [HR], 1.37; 95% CI, 1.14 to 1.64; P = .0010) and overall survival (OS), whereas dMMR predicted better DFS (HR, 0.59; 95% CI, 0.47 to 0.74; P < .001) and OS. The favorable prognosis of dMMR was maintained in obese patients.ConclusionColon cancers from obese patients are less likely to show dMMR, suggesting obesity-related differences in the pathogenesis of colon cancer. Although obesity was independently associated with adverse outcome, the favorable prognostic impact of dMMR was maintained among obese patients.
Identification of a Monocyte-Predisposed Hierarchy of Hematopoietic Progenitor Cells in the Adventitia of Postnatal Murine Aorta
Psaltis, Peter J. , Harbuzariu, Adriana , Delacroix, Sinny , Witt, Tyra A. , Holroyd, Eric, Spoon, Daniel B., Hoffman, Scott J., Pan, Shuchong, Kleppe, Laurel S., Mueske, Cheryl S., Gulati, Rajiv , Sandhu, Gurpreet S. , Simari, Robert D.

Circulation | December 28, 2011 | Volume: 125 | Issue: 4 | Pages: 592-603

10.1161/circulationaha.111.059360 | PMID 22203692 Get It

Background— Hematopoiesis originates from the dorsal aorta during embryogenesis. Although adult blood vessels harbor progenitor populations for endothelial and smooth muscle cells, it is not known if they contain hematopoietic progenitor or stem cells. Here, we hypothesized that the arterial wall is a source of hematopoietic progenitor and stem cells in postnatal life. Methods and Results— Single-cell aortic disaggregates were prepared from adult chow-fed C57BL/6 and apolipoprotein E–null (ApoE −/− ) mice. In short- and long-term methylcellulose-based culture, aortic cells generated a broad spectrum of multipotent and lineage-specific hematopoietic colony-forming units, with a preponderance of macrophage colony-forming units. This clonogenicity was higher in lesion-free ApoE −/− mice and localized primarily to stem cell antigen-1–positive cells in the adventitia. Expression of stem cell antigen-1 in the aorta colocalized with canonical hematopoietic stem cell markers, as well as CD45 and mature leukocyte antigens. Adoptive transfer of labeled aortic cells from green fluorescent protein transgenic donors to irradiated C57BL/6 recipients confirmed the content of rare hematopoietic stem cells (1 per 4 000 000 cells) capable of self-renewal and durable, low-level reconstitution of leukocytes. Moreover, the predominance of long-term macrophage precursors was evident by late recovery of green fluorescent protein–positive colonies from recipient bone marrow and spleen that were exclusively macrophage colony-forming units. Although trafficking from bone marrow was shown to replenish some of the hematopoietic potential of the aorta after irradiation, the majority of macrophage precursors appeared to arise locally, suggesting long-term residence in the vessel wall. Conclusions— The postnatal murine aorta contains rare multipotent hematopoietic progenitor/stem cells and is selectively enriched with stem cell antigen-1–positive monocyte/macrophage precursors. These populations may represent novel, local vascular sources of inflammatory cells.
Artifacts in Digital Radiography
Walz‐Flannigan, Alisa , Magnuson, Dayne, Erickson, Daniel L. , Schueler, Beth A.

American Journal of Roentgenology | December 22, 2011 | Volume: 198 | Issue: 1 | Pages: 156-161

10.2214/ajr.11.7237 | PMID 22194492 Get It

Circulating Soluble Intercellular Adhesion Molecule 1 and Subclinical Atherosclerosis: the Coronary Artery Risk Development in Young Adults Study
Gross, Myron D., Bielinski, Suzette J. , Reiner, Alex P. , Bailey, Kent R. , Thyagarajan, Bharat , Carr, J. Jeffrey , Jacobs, David R. , Suarez-Lopez, Jose Ricardo , Duprez, Daniel A. , Bielinski, Suzette , Thyagarajan, Bharat , Jacobs, David R

Clinical Chemistry | December 17, 2011 | Volume: 58 | Issue: 2 | Pages: 411-420

10.1373/clinchem.2011.168559 | PMID 22179741 Get It

AbstractBACKGROUNDSoluble intercellular adhesion molecule 1 (sICAM-1) is associated with endothelial dysfunction and clinical cardiovascular disease. We investigated the relationship of subclinical atherosclerosis with sICAM-1 concentration.METHODSsICAM-1 concentration was assayed at year 15 of the Coronary Artery Risk Development in Young Adults (CARDIA) Study (black and white men and women, average age 40 years). We assessed progression of coronary artery calcification (CAC) through year 20 (n = 2378), and both carotid artery stenosis (n = 2432) and intima-media thickness (IMT) at year 20 (n = 2240).RESULTSMedian sICAM-1 was 145.9 μg/L. Among a subgroup with advanced atherosclerotic plaque (either CAC or stenosis), IMT was 0.010 (95% CI 0.003–0.017 mm) higher per SD of sICAM-1 (44 μg/L) in a model adjusted for age, race, sex, clinic, smoking, exercise, body size, education, blood pressure, antihypertensive medication, plasma lipids, and cholesterol-lowering medication. With the same adjustment, the odds ratio (OR) for the presence of year-20 carotid artery stenosis per SD of sICAM-1 was 1.12 (95% CI 1.01–1.25, P &lt; 0.04), whereas for occurrence of CAC progression the OR was 1.16 (1.04–1.31, P &lt; 0.01). The associations with CAC and carotid stenosis were strongest in the top 20th of the sICAM-1 distribution.CONCLUSIONSsICAM-1 concentration may be an early biomarker that indicates changes in the artery wall that accompany atherosclerosis, as well as the presence of advanced plaque in the coronary and carotid arteries. This finding holds in people with low total burden of atherosclerosis, decades before the development of clinical CVD.
Treatment of Colorectal Peritoneal Carcinomatosis With Systemic Chemotherapy: A Pooled Analysis of North Central Cancer Treatment Group Phase III Trials N9741 and N9841
Franko, Jan , Shi, Qian , Goldman, Charles D., Pockaj, Barbara A. , Nelson, Garth D. , Goldberg, Richard M. , Pitot, Henry C., Sargent, Daniel J. , Grothey, Axel , Alberts, Steven R. , Sargent, Daniel J , Shi, Qian

Journal of Clinical Oncology | December 13, 2011 | Volume: 30 | Issue: 3 | Pages: 263-267

10.1200/jco.2011.37.1039 | PMID 22162570 Get It

Purpose Symptoms and complications of metastatic colorectal cancer (mCRC) differ by metastatic sites. There is a paucity of prospective survival data for patients with peritoneal carcinomatosis colorectal cancer (pcCRC). We characterized outcomes of patients with pcCRC enrolled onto two prospective randomized trials of chemotherapy and contrasted that with other manifestations of mCRC (non-pcCRC). Methods A total of 2,095 patients enrolled onto two prospective randomized trials were evaluated for overall survival (OS) and progression-free survival (PFS). A Cox proportional hazard model was used to assess the adjusted associations. Results The characteristics of the pcCRC group (n = 364) were similar to those of the non-pcCRC patients in median age (63 v 61 years, P = .23), sex (57% males v 61%, P = .23), and performance status (Eastern Cooperative Oncology Group performance status 0 or 1 94% v 96%, P = .06), but differed in frequency of liver (63% v 82%, P < .001) and lung metastases (27% v 34%, P = .01). Median OS (12.7 v 17.6 months, hazard ratio [HR] = 1.3; 95% CI, 1.2 to 1.5; P < .001) and PFS (5.8 v 7.2 months, HR = 1.2; 95% CI, 1.1 to 1.3; P = .001) were shorter for pcCRC versus non-pcCRC. The unfavorable prognostic influence of pcCRC remained after adjusting for age, PS, liver metastases, and other factors (OS: HR = 1.3, P < .001; PFS: HR = 1.1, P = .02). Infusional fluorouracil, leucovorin, and oxaliplatin was superior to irinotecan, leucovorin, and fluorouracil as a first-line treatment among pcCRC (HR for OS = 0.62, P = .005) and non-pcCRC patients (HR = 0.66, P < .001). Conclusion pcCRC is associated with a significantly shorter OS and PFS as compared with other manifestations of mCRC. Future trials for mCRC should consider stratifying on the basis of pcCRC status.
Bayesian adjustedR2for the meta‐analytic evaluation of surrogate time‐to‐event endpoints in clinical trials
Renfro, Lindsay A. , Shi, Qian , Sargent, Daniel J. , Carlin, Bradley P. , Sargent, Daniel J , Shi, Qian

Statistics in Medicine | December 9, 2011 | Volume: 31 | Issue: 8 | Pages: 743-761

10.1002/sim.4416 | PMID 22161275 Get It

A two‐stage model for evaluating both trial‐level and patient‐level surrogacy of correlated time‐to‐event endpoints has been introduced, using patient‐level data when multiple clinical trials are available. However, the associated maximum likelihood approach often suffers from numerical problems when different baseline hazards among trials and imperfect estimation of treatment effects are assumed. To address this issue, we propose performing the second‐stage, trial‐level evaluation of potential surrogates within a Bayesian framework, where we may naturally borrow information across trials while maintaining these realistic assumptions. Posterior distributions on surrogacy measures of interest may then be used to compare measures or make decisions regarding the candidacy of a specific endpoint. We perform a simulation study to investigate differences in estimation performance between traditional maximum likelihood and new Bayesian representations of common meta‐analytic surrogacy measures, while assessing sensitivity to data characteristics such as number of trials, trial size, and amount of censoring. Furthermore, we present both frequentist and Bayesian trial‐level surrogacy evaluations of time to recurrence for overall survival in two meta‐analyses of adjuvant therapy trials in colon cancer. With these results, we recommend Bayesian evaluation as an attractive and numerically stable alternative in the multitrial assessment of potential surrogate endpoints. Copyright © 2011 John Wiley & Sons, Ltd.
Using the gene ontology to scan multilevel gene sets for associations in genome wide association studies
Schaid, Daniel J. , Sinnwell, Jason P. , Jenkins, Gregory D. , McDonnell, Shannon K. , Kubo, Michiaki , Goss, Paul E. , Costantino, Joseph P., Wickerham, D. Lawrence, Weinshilboum, Richard M. , Ingle, James N. , Weinshilboum, Richard M. , Sinnwell, Jason P , McDonnell, Shannon K

Genetic Epidemiology | December 7, 2011 | Volume: 36 | Issue: 1 | Pages: 3-16

10.1002/gepi.20632 | PMID 22161999 Get It

AbstractGene‐set analyses have been widely used in gene expression studies, and some of the developed methods have been extended to genome wide association studies (GWAS). Yet, complications due to linkage disequilibrium (LD) among single nucleotide polymorphisms (SNPs), and variable numbers of SNPs per gene and genes per gene‐set, have plagued current approaches, often leading to ad hoc “fixes.” To overcome some of the current limitations, we developed a general approach to scan GWAS SNP data for both gene‐level and gene‐set analyses, building on score statistics for generalized linear models, and taking advantage of the directed acyclic graph structure of the gene ontology when creating gene‐sets. However, other types of gene‐set structures can be used, such as the popular Kyoto Encyclopedia of Genes and Genomes (KEGG). Our approach combines SNPs into genes, and genes into gene‐sets, but assures that positive and negative effects of genes on a trait do not cancel. To control for multiple testing of many gene‐sets, we use an efficient computational strategy that accounts for LD and provides accurate step‐down adjustedP‐values for each gene‐set. Application of our methods to two different GWAS provide guidance on the potential strengths and weaknesses of our proposed gene‐set analyses.