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609 citation(s) found for "Xu, Yuan".

Kinome-wide RNAi studies in human multiple myeloma identify vulnerable kinase targets, including a lymphoid-restricted kinase, GRK6
Tiedemann, Rodger E. , Zhu, Yuan Xiao , Schmidt, Jessica, Yin, Hongwei , Shi, Chang-Xin, Que, Qiang, Basu, Gargi D. , Azorsa, David O. , Perkins, Louise M. , Braggio, Esteban , Fonseca, Rafaël , Bergsagel, P. Leif , Mousses, Spyro, Stewart, A. Keith , Bergsagel, P. Leif , Braggio, Esteban , Fonseca, Rafael

Blood | December 8, 2009 | Volume: 115 | Issue: 8 | Pages: 1594-1604

10.1182/blood-2009-09-243980 | PMID 19996089 Get It

AbstractA paucity of validated kinase targets in human multiple myeloma has delayed clinical deployment of kinase inhibitors in treatment strategies. We therefore conducted a kinome-wide small interfering RNA (siRNA) lethality study in myeloma tumor lines bearing common t(4;14), t(14;16), and t(11;14) translocations to identify critically vulnerable kinases in myeloma tumor cells without regard to preconceived mechanistic notions. Fifteen kinases were repeatedly vulnerable in myeloma cells, including AKT1, AK3L1, AURKA, AURKB, CDC2L1, CDK5R2, FES, FLT4, GAK, GRK6, HK1, PKN1, PLK1, SMG1, and TNK2. Whereas several kinases (PLK1, HK1) were equally vulnerable in epithelial cells, others and particularly G protein–coupled receptor kinase, GRK6, appeared selectively vulnerable in myeloma. GRK6 inhibition was lethal to 6 of 7 myeloma tumor lines but was tolerated in 7 of 7 human cell lines. GRK6 exhibits lymphoid-restricted expression, and from coimmunoprecipitation studies we demonstrate that expression in myeloma cells is regulated via direct association with the heat shock protein 90 (HSP90) chaperone. GRK6 silencing causes suppression of signal transducer and activator of transcription 3 (STAT3) phosphorylation associated with reduction in MCL1 levels and phosphorylation, illustrating a potent mechanism for the cytotoxicity of GRK6 inhibition in multiple myeloma (MM) tumor cells. As mice that lack GRK6 are healthy, inhibition of GRK6 represents a uniquely targeted novel therapeutic strategy in human multiple myeloma.
Phosphate Crowding and DNA Bending
Hardwidge, Philip R. , Zimmerman, Joseph , Vaghefi, Morteza M., Hogrefe, Richard I., Maher, L. James, Pang, Yuan‐Ping

ACS Symposium Series | July 24, 2009 | Volume: No volume available | Issue: No issue available | Pages: 111-131

10.1021/bk-2004-0884.ch005 Get It

A c-Myc–SIRT1 feedback loop regulates cell growth and transformation
Yuan, Jian , Minter‐Dykhouse, Katherine, Lou, Zhenkun , Yuan, Jian

Journal of Cell Biology | April 13, 2009 | Volume: 185 | Issue: 2 | Pages: 203-211

10.1083/jcb.200809167 | PMID 19364925 Get It

The protein deacetylase SIRT1 has been implicated in a variety of cellular functions, including development, cellular stress responses, and metabolism. Increasing evidence suggests that similar to its counterpart, Sir2, in yeast, Caenorhabditis elegans, and Drosophila melanogaster, SIRT1 may function to regulate life span in mammals. However, SIRT1's role in cancer is unclear. During our investigation of SIRT1, we found that c-Myc binds to the SIRT1 promoter and induces SIRT1 expression. However, SIRT1 interacts with and deacetylates c-Myc, resulting in decreased c-Myc stability. As a consequence, c-Myc's transformational capability is compromised in the presence of SIRT1. Overall, our experiments identify a c-Myc–SIRT1 feedback loop in the regulation of c-Myc activity and cellular transformation, supporting/suggesting a role of SIRT1 in tumor suppression.
Identification of a potent natural triterpenoid inhibitor of proteosome chymotrypsin-like activity and NF-κB with antimyeloma activity in vitro and in vivo
Tiedemann, Rodger E. , Schmidt, Jessica, Keats, Jonathan J. , Zhu, Yuan Xiao , Palmer, Stephen, Mao, Xinliang , Schimmer, Aaron D. , Stewart, A. Keith, Shi, Chang-Xin , Keats, Jonathan J

Blood | December 19, 2008 | Volume: 113 | Issue: 17 | Pages: 4027-4037

10.1182/blood-2008-09-179796 | PMID 19096011 Get It

AbstractAs multiple myeloma tumors universally dysregulate cyclin D genes we conducted high-throughput chemical library screens for compounds that induce suppression of cyclin D2 promoter transcription. The top-ranked compound was a natural triterpenoid, pristimerin. Strikingly, the early transcriptional response of cells treated with pristimerin closely resembles cellular responses elicited by proteosome inhibitors, with rapid induction of heat shock proteins, activating transcription factor 3 (ATF3), and CHOP. Enzymatic assays and immunoblotting confirm that pristimerin rapidly (< 90 minutes) and specifically inhibits chymotrypsin-like proteosome activity at low concentrations (< 100 nM) and causes accumulation of cellular ubiquitinated proteins. Notably, cytotoxic triterpenoids including pristimerin inhibit NF-κB activation via inhibition of IKKα or IKKβ, whereas proteosome inhibitors instead suppress NF-κB function by impairing degradation of ubiquitinated IκB. By inhibiting both IKK and the proteosome, pristimerin causes overt suppression of constitutive NF-κB activity in myeloma cells that may mediate its suppression of cyclin D. Multiple myeloma is exquisitely sensitive to proteosome or NF-κB pathway inhibition. Consistent with this, pristimerin is potently and selectively lethal to primary myeloma cells (IC50 < 100 nM), inhibits xenografted plasmacytoma tumors in mice, and is synergistically cytotoxic with bortezomib—providing the rationale for pharmaceutical development of triterpenoid dual-function proteosome/NF-κB inhibitors as therapeutics for human multiple myeloma and related malignancies.
Breast Cancer Risk Reduction and Membrane-Bound Catechol O -Methyltransferase Genetic Polymorphisms
Zhang, Jianping , Hildebrandt, Michelle, Wang, Liewei , Fredericksen, Zachary, Sellers, Thomas A. , Miller, William H. , Dixon, J. Michael , Brauch, Hiltrud , Eichelbaum, Michel , Justenhoven, Christina , Hamann, Ute , Ko, Yon, Brüning, Thomas , Chang‐Claude, Jenny , Wang‐Gohrke, Shan , Schaid, Daniel J. , Weinshilboum, Richard M. , Ji, Yuan , Olson, Janet E. , Ingle, James N. , Weinshilboum, Richard M. , Brauch, Hiltrud

Cancer Research | July 16, 2008 | Volume: 68 | Issue: 14 | Pages: 5997-6005

10.1158/0008-5472.can-08-0043 | PMID 18632656 Get It

Abstract Catechol O-methyltransferase (COMT)-catalyzed methylation of catecholestrogens has been proposed to play a protective role in estrogen-induced genotoxic carcinogenesis. We have taken a comprehensive approach to test the hypothesis that genetic variation in COMT might influence breast cancer risk. Fifteen COMT single nucleotide polymorphisms (SNPs) selected on the basis of in-depth resequencing of the COMT gene were genotyped in 1,482 DNA samples from a Mayo Clinic breast cancer case control study. Two common SNPs in the distal promoter for membrane-bound (MB) COMT, rs2020917 and rs737865, were associated with breast cancer risk reduction in premenopausal women in the Mayo Clinic study, with allele-specific odds ratios (OR) of 0.70 [95% confidence interval (CI), 0.52–0.95] and 0.68 (95% CI, 0.51–0.92), respectively. These two SNPs were then subjected to functional genomic analysis and were genotyped in an additional 3,683 DNA samples from two independent case control studies (GENICA and GESBC). Functional genomic experiments showed that these SNPs could up-regulate transcription and that they altered DNA-protein binding patterns. Furthermore, substrate kinetic and exon array analyses suggested a role for MB-COMT in catecholestrogen inactivation. The GENICA results were similar to the Mayo case control observations, with ORs of 0.85 (95% CI, 0.72–1.00) and 0.85 (95% CI, 0.72–1.01) for the two SNPs. No significant effect was observed in the GESBC study. These studies showed that two SNPs in the COMT distal promoter were associated with breast cancer risk reduction in two of three case control studies, compatible with the results of functional genomic experiments, suggesting a role for MB-COMT in breast cancer risk. [Cancer Res 2008;68(14):5997–6005]
Magnetic Resonance Elastography Assessment of Focused Ultrasound Surgery in Cancer Models: A Pilot Study
Primak, S. V., Yuan, Le , Glaser, Kevin J. , Reynold, Carol A., Lai, Jinping , Rossman, Philip J., Felmlee, Joel P. , Roberts, Lewis R. , Ehman, Richard L.

Advances in Bioengineering, Biomedical and Safety Systems | April 3, 2008 | Volume: No volume available | Issue: No issue available | Pages: 41-45

10.1115/imece2006-16010 Get It

MRI guided focused ultrasound (FUS) has been shown to create thermal lesions where tissue stiffness changes significantly. To assess the correlation between tissue stiffness change and tissue ablation, a pilot animal based study was conducted to treat LNCaP tumors in vivo and Hep3B tumors immediately post mortem. MR elastography was used to analyze tissue stiffness before and after ablation. Treated tissue was excised immediately after each experiment and processed by routine histological analysis. Four prostate cancer tumors and four liver cancer tumors showed, on average, a threefold increase in stiffness due to FUS thermal treatment. Histology showed complete (100%) coagulation necrosis in these cases. These data suggest that MRE may be an effective means to assess tissue ablation.
Human phenylethanolamineN-methyltransferase genetic polymorphisms and exercise-induced epinephrine release
Snyder, Eric M., Salavaggione, Oreste E., Moon, Irene, Batzler, Anthony , Yee, Vivien C., Schaid, Daniel J. , Johnson, Bruce D., Weinshilboum, Richard M. , Ji, Yuan , Fridley, Brooke L. , Joyner, Michael J. , Weinshilboum, Richard M.

Physiological Genomics | March 19, 2008 | Volume: 33 | Issue: 3 | Pages: 323-332

10.1152/physiolgenomics.00248.2007 | PMID 18349382 Get It

Phenylethanolamine N-methyltransferase (PNMT) catalyzes the synthesis of epinephrine from norepinephrine. We previously identified and functionally characterized common sequence variation in the PNMT gene. In the present study, we set out to determine whether common PNMT genetic polymorphisms might be associated with individual variation in circulating epinephrine levels during exercise in 74 Caucasian American subjects. Circulating epinephrine levels were measured in each subject at baseline and during two different levels of exercise, ∼40% and ∼75% of peak workload. The PNMT gene was resequenced with DNA from each study subject. Eight novel PNMT polymorphisms were identified, including a C319T (Arg107Cys) nonsynonymous single nucleotide polymorphism (SNP) and I1G(280)A, a SNP located in the first intron of the gene. The I1G(280)A SNP was significantly associated with decreased exercise-induced circulating epinephrine levels and with a decreased epinephrine-to-norepinephrine ratio. The Cys107 recombinant allozyme displayed significantly lower levels of both PNMT activity and immunoreactive protein than the wild-type allozyme after transfection into COS-1 cells, but it did not appear to be associated with level of epinephrine in these subjects. Electrophoretic mobility shift and reporter gene assays performed with the I1G(280)A SNP indicated that this polymorphism could bind nuclear proteins and might modulate gene transcription. Our studies suggest that functionally significant variant sequence in the human PNMT gene might contribute to individual variation in levels of circulating epinephrine during exercise.
Cryptic proteolytic activity of dihydrolipoamide dehydrogenase
Babady, Ngolela Esther, Pang, Yuan‐Ping , Elpeleg, Orly , Isaya, Grazia , Pang, Yuan-Ping

Proceedings of the National Academy of Sciences | April 2, 2007 | Volume: 104 | Issue: 15 | Pages: 6158-6163

10.1073/pnas.0610618104 | PMID 17404228 Get It

The mitochondrial enzyme, dihydrolipoamide dehydrogenase (DLD), is essential for energy metabolism across eukaryotes. Here, conditions known to destabilize the DLD homodimer enabled the mouse, pig, or human enzyme to function as a protease. A catalytic dyad (S456–E431) buried at the homodimer interface was identified. Serine protease inhibitors and an S456A or an E431A point mutation abolished the proteolytic activity, whereas other point mutations at the homodimer interface domain enhanced the proteolytic activity, causing partial or complete loss of DLD activity. In humans, mutations in the DLD homodimer interface have been linked to an atypical form of DLD deficiency. These findings reveal a previously unrecognized mechanism by which certain DLD mutations can simultaneously induce the loss of a primary metabolic activity and the gain of a moonlighting proteolytic activity. The latter could contribute to the metabolic derangement associated with DLD deficiency and represent a target for therapies of this condition.
Insights into the mechanisms of action of anti‐Aβ antibodies in Alzheimer's disease mouse models
Levites, Yona , Smithson, Lisa, Price, Robert, Dakin, Rachel , Yuan, Bin , Kim, Jungsu , Reed, Dana Kim , Rosenberry, Terrone L. , Das, Pritam , Golde, Todd E. , Sierks, Michael R. , McGowan, Eileen , Kim, Jungsu

The FASEB Journal | October 26, 2006 | Volume: 20 | Issue: 14 | Pages: 2576-2578

10.1096/fj.06-6463fje | PMID 17068112 Get It

A number of hypotheses regarding how anti‐Aβ antibodies alter amyloid deposition have been postulated, yet there is no consensus as to how Aβ immunotherapy works. We have examined the in vivo binding properties, pharmacokinetics, brain penetrance, and alterations in Aβ levels after a single peripheral dose of anti‐Aβ antibodies to both wild‐type (WT) and young non‐Aβ depositing APP and BRI‐Aβ42 mice. The rapid rise in plasma Aβ observed after antibody (Ab) administration is attributable to prolongation of the half‐life of Aβ bound to the Ab. Only a miniscule fraction of Ab enters the brain, and despite dramatic increases in plasma Aβ, we find no evidence that total brain Aβ levels are significantly altered. Surprisingly, cerebral spinal fluid Aβ levels transiently rise, and when Ab:Aβ complex is directly injected into the lateral ventricles of mice, it is rapidly cleared from the brain into the plasma where it remains stable. When viewed in context of daily turnover of Aβ, these data provide a framework to evaluate proposed mechanisms of Aβ attenuation mediated by peripheral administration of an anti‐Aβ monoclonal antibody (mAb) effective in passive immunization paradigm. Such quantitative data suggest that the mAbs are either indirectly enhancing clearance of Aβ or targeting a low abundance aggregation intermediate.—Levites, Y., Smithson, L. A., Price, R. W., Dakin. R. S., Yuan, B., Sierks, M. R., Kim, J., McGowan, E., Reed, D. K., Rosenberry, T. L., Das, P., Golde, T. E. Insights into the mechanisms of action of anti‐Aβ antibodies in Alzheimer's disease mouse models. FASEB J. 20, E2002–E2014 (2006)
Complexes of Alkylene-Linked Tacrine Dimers with Torpedo californica Acetylcholinesterase:  Binding of Bis(5)-tacrine Produces a Dramatic Rearrangement in the Active-Site Gorge
Rydberg, Edwin H., Brumshtein, Boris , Greenblatt, Harry M., Wong, Dawn M. , Shaya, David , Williams, Larry D., Carlier, Paul R. , Pang, Yuan‐Ping , Silman, Israel , Sussman, Joel L. , Williams, Larry D., Pang, Yuan-Ping

Journal of Medicinal Chemistry | August 9, 2006 | Volume: 49 | Issue: 18 | Pages: 5491-5500

10.1021/jm060164b | PMID 16942022 Get It