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921 citation(s) found for "Qi, Jun".

Risk Factors for Long-term Hip Osteoarthritis in Patients With Femoroacetabular Impingement Without Surgical Intervention
Melugin, Heath P. , Hale, Rena F. , Zhou, Jun , LaPrade, Matthew D. , Bernard, Christopher D. , Leland, Devin P. , Levy, Bruce A. , Krych, Aaron J. , LaPrade, Matthew, Bernard, Christopher, Leland, Devin, Krych, Aaron J

The American Journal of Sports Medicine | August 21, 2020 | Volume: 48 | Issue: 12 | Pages: 2881-2886

10.1177/0363546520949179 | PMID 32822223 Get It

Background: Femoroacetabular impingement (FAI) is a common cause of hip pain and a known risk factor for hip osteoarthritis (OA) and total hip arthroplasty (THA) at a young age. Unfortunately, little is known about the specific factors associated with an increased risk of OA. Purpose: To (1) report the overall rate of symptomatic hip OA and/or THA in patients with FAI without surgical intervention and (2) identify radiographic features and patient characteristics associated with hip OA. Study Design: Case-control study; Level of evidence, 3. Methods: A geographic database was used to identify all patients with hip pain and radiographs between 2000 and 2016. Chart review was performed to identify patients with FAI. Patient medical records were reviewed to obtain demographic information, clinical history, physical examination findings, imaging details, and treatment details. Kaplan-Meier analysis was used to determine the rate of hip OA. Univariate and multivariate proportional hazard regression models were performed to determine risk factors for OA. Results: The study included 952 patients (649 female; 303 male; 1104 total hips) with FAI. The majority of hips had mixed type (n = 785; 71.1%), 211 (19.1%) had pincer type, and 108 (9.8%) had cam type. Mean age at time of presentation was 27.6 ± 8.7 years. Mean follow-up time was 24.7 ± 12.5 years. The rate of OA was 13.5%. THA was performed in 4% of patients. Male sex, body mass index (BMI) greater than 29, and increased age were risk factors for OA (male sex: hazard ratio [HR], 2.28; P < .01; BMI >29: HR, 2.11; P < .01; per year of increased age: HR, 1.11; P < .01.). Smoking and diabetes mellitus were not significant risk factors. No radiographic morphological features were found to be significant risk factors for OA. Conclusion: At mean follow-up of 24.7 years, 14% of hips had symptomatic OA and 4% underwent THA. BMI greater than 29, male sex, and increased age at the time of presentation with hip pain were risk factors for hip OA. The cohort consisted of a large percentage of mixed-type FAI morphologies, and no specific radiographic risk factors for OA were identified.
Electrochemical Detection of White Spot Syndrome Virus With a Silicone Rubber Disposable Electrode Composed of Graphene Quantum Dots and Gold Nanoparticle-embedded Polyaniline Nanowires
Takemura, Kenshin , Satoh, Jun, Boonyakida, Jirayu, Park, Sungjo , Park, Enoch Y. , Chowdhury, Ankan Dutta

No container title available | August 17, 2020 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-58911/v1 Get It

Abstract Background: With the enormous increment of globalization and global warming, it is expected that the number of newly evolved infectious diseases will continue to increase. To prevent damage due to these infections, the development of a diagnostic method for detecting a virus with high sensitivity in a short time is highly desired. In this study, we have developed a high-sensitivity and high-accuracy disposable electrode and evaluated it for several target viruses.Results: Conductive silicon rubber (CSR) was used to fabricate a disposable sensing matrix composed of nitrogen and sulfur-codoped graphene quantum dots (N,S-GQDs) and a gold-polyaniline nanocomposite (AuNP-PAni). A specific anti-white spot syndrome virus (WSSV) antibody was conjugated to the surface of this nanocomposite, which was successfully applied for the detection of WSSV over a wide linear range of 1.45 × 102 to 1.45 × 10⁵ DNA copies/ml, with a detection limit as low as 48.4 DNA copies/ml.Conclusion: The engineered sensor electrode can retain the detection activity for up to 5 weeks, a vital long-term stability requirement for disposable sensing applications. This is the first demonstration of the detection of WSSV by a nanofabricated sensing electrode with high sensitivity, selectivity, and stability, providing a potential diagnostic tool to monitor WSSV in the aquaculture industry.
Practice patterns and recommendations for pediatric image‐guided radiotherapy: A Children's Oncology Group report
Hua, Chia‐Ho , Vern-Gross, T.Z., Olch, Arthur J. , Alaei, Parham , Sathiaseelan, Vythialingam, Ulin, Kenneth, Laurie, Fran, Gopalakrishnan, Mahesh , Krasin, Matthew J. , Merchant, Thomas E. , Donaldson, Sarah S. , FitzGerald, Thomas J. , Haas‐Kogan, Daphne A. , Mahajan, Anita , Marcus, Karen J. , Taylor, Paige A. , Ahern, Verity , Followill, D , Breneman, John C. , Kalapurakal, John A. , Hodgson, David , Vern-Gross, Tamara Z, Wolden, Suzanne , Merchant, Thomas E , Donaldson, Sarah S , FitzGerald, Thomas J , Hodgson, David C , Laack, Nadia N Issa , Krasin, Matthew J , Taylor, Paige , Hodgson, David , Hess, Clayton Burnett , Deng, Jun , Gopalakrishnan, Mahesh, Esiashvili, Natia , Wolden, Suzanne L. , Constine, Louis S , Laack, Nadia N. , Buchsbaum, Jeffrey Craig

Pediatric Blood & Cancer | August 10, 2020 | Volume: 67 | Issue: 10 | Pages: No page available

10.1002/pbc.28629 | PMID 32776500 Get It

AbstractThis report by the Radiation Oncology Discipline of Children's Oncology Group (COG) describes the practice patterns of pediatric image‐guided radiotherapy (IGRT) based on a member survey and provides practice recommendations accordingly. The survey comprised of 11 vignettes asking clinicians about their recommended treatment modalities, IGRT preferences, and frequency of in‐room verification. Technical questions asked physicists about imaging protocols, dose reduction, setup correction, and adaptive therapy. In this report, the COG Radiation Oncology Discipline provides an IGRT modality/frequency decision tree and the expert guidelines for the practice of ionizing image guidance in pediatric radiotherapy patients.
Author response: Microglial calcium signaling is attuned to neuronal activity in awake mice
Bystrom, Lauren , Ying, Yanlu , Umpierre, Anthony D. , Liu, Yong , Worrell, Gregory A. , Wu, Long‐Jun

No container title available | August 4, 2020 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.7554/elife.56502.sa2 Get It

Conventional Cytogenetic Analysis of Hematologic Neoplasms: A 20-Year Review of Proficiency Test Results From the College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee
Larson, Daniel P. , Akkari, Yassmine, Dyke, Daniel L. Van , Raca, Gordana , Gardner, Juli-Anne, Rehder, Catherine , Kaiser‐Rogers, Kathleen, Eagle, Penny, Yuhas, Jason, Kearney, Hutton M. , Conlin, Laura K. , Dolan, Michelle, Peterson, Jess F. , Van Dyke, Daniel L, Yuhas, Jason A, Kearney, Hutton, Peterson, Jess F , Gu, Jun , Toydemir, Reha M. , Tang, Guilin , Ketterling, Rhett P.

Archives of Pathology & Laboratory Medicine | July 27, 2020 | Volume: 145 | Issue: 2 | Pages: 176-190

10.5858/arpa.2020-0089-cp | PMID 32886736 Get It

Context.— One goal of the joint College of American Pathologists/American College of Medical Genetics and Genomics Cytogenetics Committee is to ensure the accurate detection and description of chromosomal abnormalities in both constitutional and neoplastic specimens, including hematologic neoplasms. Objective.— To report a 20-year performance summary (1999–2018) of conventional chromosome challenges focusing on hematologic neoplasms. Design.— A retrospective review was performed from 1999 through 2018 to identify karyotype challenges specifically addressing hematologic neoplasms. The overall performance of participants was examined to identify potential recurring errors of clinical significance. Results.— Of 288 total conventional chromosome challenges from 1999–2018, 87 (30.2%) were presented in the context of a hematologic neoplasm, based on the provided clinical history, specimen type, and/or chromosomal abnormalities. For these 87 hematologic neoplasm challenges, 91 individual cases were provided and graded on the basis of abnormality recognition and karyotype nomenclature (ISCN, International System for Human Cytogenomic [previously Cytogenetic] Nomenclature). Of the 91 cases, 89 (97.8%) and 87 (95.6%) exceeded the required 80% consensus for grading of abnormality recognition and correct karyotype nomenclature, respectively. The 2 cases (2 of 91; 2.2%) that failed to meet the 80% consensus for abnormality recognition had complex karyotypes. The 4 cases (4 of 91; 4.4%) that failed to meet the 80% consensus for correct karyotype nomenclature were the result of incorrect abnormality recognition (2 cases), missing brackets in the karyotype (1 case), and incorrect breakpoint designation (1 case). Conclusions.— This 20-year review demonstrates clinical cytogenetics laboratories have been and continue to be highly proficient in the detection and description of chromosomal abnormalities associated with hematologic neoplasms.
Microglial calcium signaling is attuned to neuronal activity in awake mice
Umpierre, Anthony D. , Bystrom, Lauren , Ying, Yanlu , Wu, Long‐Jun , Bystrom, Lauren L, Liu, Yong U, Wu, Long-Jun , Umpierre, Anthony D , Liu, Yong , Worrell, Gregory A.

eLife | July 27, 2020 | Volume: 9 | Issue: No issue available | Pages: No page available

10.7554/elife.56502 | PMID 32716294 Get It

Microglial calcium signaling underlies a number of key physiological and pathological processes in situ, but has not been studied in vivo in awake mice. Using multiple GCaMP6 variants targeted to microglia, we assessed how microglial calcium signaling responds to alterations in neuronal activity across a wide range. We find that only a small subset of microglial somata and processes exhibited spontaneous calcium transients in a chronic window preparation. However, hyperactive shifts in neuronal activity (kainate status epilepticus and CaMKIIa Gq DREADD activation) triggered increased microglial process calcium signaling, often concomitant with process extension. Additionally, hypoactive shifts in neuronal activity (isoflurane anesthesia and CaMKIIa Gi DREADD activation) also increased microglial process calcium signaling. Under hypoactive neuronal conditions, microglia also exhibited process extension and outgrowth with greater calcium signaling. Our work reveals that microglia have highly distinct microdomain signaling, and that processes specifically respond to bi-directional shifts in neuronal activity through increased calcium signaling.
Penalized variance components for association of multiple genes with traits
Schaid, Daniel J. , Sinnwell, Jason P. , Larson, Nicholas B. , Sinnwell, Jason P , Larson, Nicholas B , Chen, Jun

Genetic Epidemiology | July 23, 2020 | Volume: 44 | Issue: 7 | Pages: 665-675

10.1002/gepi.22340 | PMID 33463755 Get It

AbstractVariance component models have gained popularity for genetic analyses, driven by their flexibility to simultaneously analyze multiple genetic variants in a gene by kernel statistics, and their ability to account for population stratification via genomic relationship matrices. For exploratory analyses with modest sample sizes and a potentially large number of variance components, it can be challenging to use standard maximum‐likelihood or restricted maximum‐likelihood methods to estimate variance components, because these iterative methods often fail to converge when likelihood surfaces are fairly flat, and standard‐likelihood ratio statistical tests are not adequate. To overcome these limitations, we developed a penalized‐likelihood model, whereby the penalty function follows the popular elastic‐net approach, applying both L1 and L2 penalties to the variance components. By simulations, we demonstrate the potential gain in power by using both L1 and L2 penalties, and results from our simulations suggest that assigning 80% of the penalty parameter to the L1 penalty and 20% to the L2 penalty provides a reasonable balance between false‐positive and false‐negative results. Larger sample size improves the properties of our methods, at the cost of longer computation time. Application of our methods to a study of the influence of DNA methylation on levels of cortisol in reaction to stress testing shows how our method can be used to prioritize findings for further functional studies.
Role of Surgery and Perioperative Therapy in Older Patients with Resectable Pancreatic Ductal Adenocarcinoma
Liu, Junjia, Yin, Jun , Ogden, John R. , Truty, Mark J. , Bekaii‐Saab, Tanios , Petersen, Gloria M. , Jatoi, Aminah , Xie, Hao , McWilliams, Robert R. , Hubbard, Joleen M. , Ma, Wen Wee, Bekaii-Saab, Tanios S , Xie, Hao , Mahipal, Amit , Wee, Wen

The Oncologist | July 14, 2020 | Volume: 25 | Issue: 11 | Pages: e1681-e1690

10.1634/theoncologist.2020-0086 | PMID 32663355 Get It

Abstract Background It is unclear whether results from recent trials of resectable pancreatic ductal adenocarcinoma (PDAC) are generalizable to older patients, who are underrepresented. We aimed to evaluate outcomes of surgery and of neoadjuvant and adjuvant therapy in older patients with resectable PDAC. Patients and Methods We included patients aged ≥65 years with upfront resectable PDAC from a prospectively maintained pancreatic cancer registry from 2007 to 2016. Patients were stratified into ages 65–75 and 75+ years. Overall survival (OS) was assessed in treatment comparisons: (A) surgery (n = 636) versus nonsurgical (n = 178), (B) neoadjuvant therapy (n = 139) versus upfront surgery (n = 497), and (C) adjuvant therapy (n = 379) versus surgery alone (n = 118). We compared neoadjuvant (n = 139) versus adjuvant therapy (n = 379) in an exploratory analysis. Results Nine hundred and three patients had a median age of 73.7 (range, 65–96.6) years. Median OS was 26.6 versus 11.9 months (adjusted hazard ratio [HRadj], 0.4; 95% confidence interval [CI], 0.31–0.52; p &lt; .001) in Comparison A groups, 30.7 versus 25.8 months (HRadj, 0.69; 95% CI, 0.49–0.96; p = .03) in Comparison B groups, and 26.9 versus 17.4 months (HRadj, 0.62; 95% CI, 0.44–0.88; p = .008) in Comparison C groups, respectively. OS benefit in these treatment comparisons was present in age group 75+ with HRadj 0.24 (95% CI, 0.16–0.36; p &lt; .001) in Comparison A and HRadj 0.52 (95% CI, 0.27–1; p = .049) in Comparison B, but not in Comparison C with HRadj 0.68 (95% CI, 0.43–1.08; p = .1). Statistically comparable median OS of patients who received neoadjuvant or adjuvant therapy stratified by age groups was observed. Conclusion Older patients with resectable PDAC who received surgery, neoadjuvant therapy, or adjuvant therapy appeared to have improved survival outcomes compared with those who did not receive such treatment. Implications for Practice Older patients with resectable pancreatic ductal adenocarcinoma (PDAC) in general are underrepresented in large clinical trials and less well studied in terms of the role of surgery, neoadjuvant therapy, and adjuvant therapy. This study collected data on older patients with resectable PDAC from a prospectively maintained single-institutional pancreatic cancer registry of a tertiary referral center from 2007 to 2016. It was found that, with multidisciplinary evaluation, older patients with resectable PDAC who received surgery, neoadjuvant therapy, or adjuvant therapy appeared to have improved survival outcomes compared with those who did not receive such treatment. These results are of substantial importance to practitioners who treat older patients, who are traditionally underrepresented in most clinical trials.
Increased cellular senescence in the murine and human stenotic kidney: Effect of mesenchymal stem cells
Kim, Seo Rin , Zou, Xiangyu , Puranik, Amrutesh S. , Abumoawad, Abdelrhman , Zhu, Xiangyang , Textor, Stephen C., Kirkland, James L. , Lerman, Lilach O. , Abumoawad, Abdelrhman M, Tchkonia, Tamara, Lerman, Lilach O , Puranik, Amrutesh S , Tang, Hui Jun , Hickson, LaTonya J. , Tchkonia, Tamar

Journal of Cellular Physiology | July 13, 2020 | Volume: 236 | Issue: 2 | Pages: 1332-1344

10.1002/jcp.29940 | PMID 32657444 Get It

AbstractCell stress may give rise to insuperable growth arrest, which is defined as cellular senescence. Stenotic kidney (STK) ischemia and injury induced by renal artery stenosis (RAS) may be associated with cellular senescence. Mesenchymal stem cells (MSCs) decrease some forms of STK injury, but their ability to reverse senescence in RAS remains unknown. We hypothesized that RAS evokes STK senescence, which would be ameliorated by MSCs. Mice were studied after 4 weeks of RAS, RAS treated with adipose tissue‐derived MSCs 2 weeks earlier, or sham. STK senescence‐associated β‐galactosidase (SA‐β‐Gal) activity was measured. Protein and gene expression was used to assess senescence and the senescence‐associated secretory phenotype (SASP), and staining for renal fibrosis, inflammation, and capillary density. In addition, senescence was assessed as p16+ and p21+ urinary exosomes in patients with renovascular hypertension (RVH) without or 3 months after autologous adipose tissue‐derived MSC delivery, and in healthy volunteers (HV). In RAS mice, STK SA‐β‐Gal activity increased, and senescence and SASP marker expression was markedly elevated. MSCs improved renal function, fibrosis, inflammation, and capillary density, and attenuated SA‐β‐Gal activity, but most senescence and SASP levels remained unchanged. Congruently, in human RVH, p21+ urinary exosomes were elevated compared to HV, and only slightly improved by MSC, whereas p16+ exosomes remained unchanged. Therefore, RAS triggers renal senescence in both mice and human subjects. MSCs decrease renal injury, but only partly mitigate renal senescence. These observations support exploration of targeted senolytic therapy in RAS.
Covariate Adaptive False Discovery Rate Control With Applications to Omics-Wide Multiple Testing
Zhang, Xianyang , Chen, Jun

Journal of the American Statistical Association | July 9, 2020 | Volume: 117 | Issue: 537 | Pages: 411-427

10.1080/01621459.2020.1783273 Get It