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489 citation(s) found for "Xi, Xin".

CX3CR1 identifies PD-1 therapy–responsive CD8+ T cells that withstand chemotherapy during cancer chemoimmunotherapy
Yan, Yiyi , Cao, Siyu , Liu, Xin , Harrington, Susan M. , Bindeman, Wendy , Adjei, Alex A. , Jang, Jin Sung , Jen, Jin, Li, Ying , Chanana, Pritha , Mansfield, Aaron S. , Dronca, Roxana , Dong, Haidong , Mansfield, Aaron S , Dong, Haidong , Park, Sean S. , Markovic, Svetomir N.

JCI Insight | April 18, 2018 | Volume: 3 | Issue: 8 | Pages: No page available

10.1172/jci.insight.97828 | PMID 29669928 Get It

Although immune checkpoint inhibitors have resulted in durable clinical benefits in a subset of patients with advanced cancer, some patients who did not respond to initial anti–PD-1 therapy have been found to benefit from the addition of salvage chemotherapy. However, the mechanism responsible for the successful chemoimmunotherapy is not completely understood. Here we show that a subset of circulating CD8 + T cells expressing the chemokine receptor CX3CR1 are able to withstand the toxicity of chemotherapy and are increased in patients with metastatic melanoma who responded to chemoimmunotherapy (paclitaxel and carboplatin plus PD-1 blockade). These CX3CR1 + CD8 + T cells have effector memory phenotypes and the ability to efflux chemotherapy drugs via the ABCB1 transporter. In line with clinical observation, our preclinical models identified an optimal sequencing of chemoimmunotherapy that resulted in an increase of CX3CR1 + CD8 + T cells. Taken together, we found a subset of PD-1 therapy–responsive CD8 + T cells that were capable of withstanding chemotherapy and executing tumor rejection with their unique abilities of drug efflux (ABCB1), cytolytic activity (granzyme B and perforin), and migration to and retention (CX3CR1 and CD11a) at tumor sites. Future strategies to monitor and increase the frequency of CX3CR1 + CD8 + T cells may help to design effective chemoimmunotherapy to overcome cancer resistance to immune checkpoint blockade therapy.
Exome chip analyses identify genes affecting mortality after HLA-matched unrelated-donor blood and marrow transplantation
Zhu, Qianqian , Yan, Li , Liu, Qian , Zhang, Chi , Preus, Leah, Clay‐Gilmour, Alyssa , Onel, Kenan , Pooler, Loreall , Sheng, Xin , Haiman, Christopher A. , Zhu, Xiaochun , Pasquini, Marcelo C. , Liu, Song , Hahn, Theresa , Sucheston‐Campbell, Lara E. , Clay-Gilmour, Alyssa I, Wei, Lei , Hu, Qiang , Stram, Daniel O. , Spellman, Stephen R. , McCarthy, Philip L.

Blood | April 2, 2018 | Volume: 131 | Issue: 22 | Pages: 2490-2499

10.1182/blood-2017-11-817973 | PMID 29610366 Get It

Key Points We conducted the first exome-wide association study between germ line variant genotype and survival outcomes after unrelated-donor BMT. A number of novel genes were found to significantly affect survival outcomes.
Predicted Arabidopsis Interactome Resource and Gene Set Linkage Analysis: A Transcriptomic Analysis Resource
Yao, Heng , Wang, Xiaoxuan , Chen, Pengcheng , Jin, Kang , Yao, Lixia , Mao, Chuanzao , Chen, Xin , Jin, Kang , Yao, Lixia , Mao, Chuanzao , Chen, Xin , Hai, Ling

Plant Physiology | March 12, 2018 | Volume: 177 | Issue: 1 | Pages: 422-433

10.1104/pp.18.00144 | PMID 29530937 Get It

Temporal trends of in‐hospital complications associated with catheter ablation of atrial fibrillation in the United States: An update from Nationwide Inpatient Sample database (2011–2014)
Arora, Shilpkumar , Kumar, Varun , Lahewala, Sopan , Dave, Mihir, Shah, Mahek , Tan, Bryan E‐Xin , Savani, Sejal, Badheka, Apurva, Gopalan, Radha , Shantha, Ghanshyam Palamaner Subash , Viles-González, Juan F., Deshmukh, Abhishek , Tripathi, Byomesh , Tripathi, Byomesh , Abdel‐Rahman, Mohamed H. , Tan, Bryan E-Xin

Journal of Cardiovascular Electrophysiology | February 25, 2018 | Volume: 29 | Issue: 5 | Pages: 715-724

10.1111/jce.13471 | PMID 29478273 Get It

AbstractBackgroundCatheter ablation is widely accepted intervention for atrial fibrillation (AF) refractory to antiarrhythmic drugs, but limited data are available regarding contemporary trends in major complications and in‐hospital mortality due to the procedure. This study was aimed at exploring the temporal trends of in‐hospital mortality, major complications, and impact of hospital volume on frequency of AF ablation–related outcomes.MethodsThe Nationwide Inpatient Sample database was utilized to identify the AF patients treated with catheter ablation. In‐hospital death and common complications including vascular access complications, cardiac perforation and/or tamponade, pneumothorax, stroke, and transient ischemic attack, were identified using International Classification of Disease (ICD‐9‐CM) codes.ResultIn‐hospital mortality rate of 0.15% and overall complication rate of 5.46% were noted among AF ablation recipients (n = 50,969). Significant increase in complications during study period (relative increase 56.37%, P‐trend < 0.001) was observed. Cardiac (2.65%), vascular (1.33%), and neurological (1.05%) complications were most common. On multivariate analysis (odds ratio [OR]; 95% confidence interval [95% CI]; P value), significant predictors of complications were female sex (OR = 1.40; CI = 1.17–1.68; P value < 0.001), high burden of comorbidity as indicated by Charlson Comorbidity Index ≥2 (OR = 2.84; CI = 2.29–3.52; P value < 0.001), and low hospital volume (< 50 procedures).ConclusionOur study noted a decline in AF ablation–related hospitalizations and complications associated with the procedure. These findings largely reflect shifting trends of outpatient performance of the procedure and increasing safety profile due to improved institutional expertise and catheter techniques.
Mutations causing congenital myasthenia reveal principal coupling pathway in the acetylcholine receptor ε-subunit
Shen, Xin‐Ming , Brengman, Joan M., Shen, Shelley , Durmuş, Hacer , Preethish‐Kumar, Veeramani , Yüceyar, Nur , Vengalil, Seena , Deymeer, Feza , Sine, Steven M. , Engel, Andrew G. , Nalini, Atchayaram

JCI Insight | January 24, 2018 | Volume: 3 | Issue: 2 | Pages: No page available

10.1172/jci.insight.97826 | PMID 29367459 Get It

We identify 2 homozygous mutations in the ε-subunit of the muscle acetylcholine receptor (AChR) in 3 patients with severe congenital myasthenia: εR218W in the pre-M1 region in 2 patients and εE184K in the β8-β9 linker in 1 patient. Arg218 is conserved in all eukaryotic members of the Cys-loop receptor superfamily, while Glu184 is conserved in the α-, δ-, and ε-subunits of AChRs from all species. εR218W reduces channel gating efficiency 338-fold and AChR expression on the cell surface 5-fold, whereas εE184K reduces channel gating efficiency 11-fold but does not alter AChR cell surface expression. Determinations of the effective channel gating rate constants, combined with mutant cycle analyses, demonstrate strong energetic coupling between εR218 and εE184, and between εR218 and εE45 from the β1-β2 linker, as also observed for equivalent residues in the principal coupling pathway of the α-subunit. Thus, efficient and rapid gating of the AChR channel is achieved not only by coupling between conserved residues within the principal coupling pathway of the α-subunit, but also between corresponding residues in the ε-subunit.
The unfolding landscape of the congenital myasthenic syndromes
Engel, Andrew G. , Shen, Xin‐Ming , Selcen, Duygu

Annals of the New York Academy of Sciences | January 22, 2018 | Volume: 1413 | Issue: 1 | Pages: 25-34

10.1111/nyas.13539 | PMID 29355968 Get It

AbstractCongenital myasthenic syndromes (CMS) are heterogeneous disorders in which the safety margin of neuromuscular transmission is impaired by one or more specific mechanisms. Since the advent of next‐generation sequencing methods, the discovery of novel CMS targets and phenotypes has proceeded at an accelerated rate. Here, we review the current classification of CMS and describe our findings in five of these targets identified and investigated in our laboratory in the past 5 years. Defects in LRP4 hinder synaptic development and maintenance; the defects in PREPL are predicted to diminish filling of the synaptic vesicle with acetylcholine; and defects in SNAP25, Munc13‐1, and synaptotbrevin‐1 impede synaptic vesicle exocytosis.
Genomic perturbations reveal distinct regulatory networks in intrahepatic cholangiocarcinoma
Nepal, Chirag , O’Rourke, Colm J. , Oliveira, Douglas V.N.P. , Taranta, A , Shema, Steven , Gautam, Prson , Caldéraro, Julien , Barbour, Andrew P. , Wennerberg, Krister , Wang, Xin Wei , Lautem, Anja , Roberts, Lewis R. , Andersen, Jesper B. , Roberts, Lewis R , Andersen, Jesper B , Wei Wang, Xin , Raggi, Chiara , Gautam, Prson , Wennerberg, Krister

Hepatology | December 26, 2017 | Volume: 68 | Issue: 3 | Pages: 949-963

10.1002/hep.29764 | PMID 29278425 Get It

Intrahepatic cholangiocarcinoma remains a highly heterogeneous malignancy that has eluded effective patient stratification to date. The extent to which such heterogeneity can be influenced by individual driver mutations remains to be evaluated. Here, we analyzed genomic (whole‐exome sequencing, targeted exome sequencing) and epigenomic data from 496 patients and used the three most recurrently mutated genes to stratify patients ( IDH , KRAS , TP53 , “undetermined”). Using this molecular dissection approach, each subgroup was determined to possess unique mutational signature preferences, comutation profiles, and enriched pathways. High‐throughput drug repositioning in seven patient‐matched cell lines, chosen to reflect the genetic alterations specific for each patient group, confirmed in silico predictions of subgroup‐specific vulnerabilities linked to enriched pathways. Intriguingly, patients lacking all three mutations (“undetermined”) harbored the most extensive structural alterations, while isocitrate dehydrogenase mutant tumors displayed the most extensive DNA methylome dysregulation, consistent with previous findings. Conclusion : Stratification of intrahepatic cholangiocarcinoma patients based on occurrence of mutations in three classifier genes ( IDH , KRAS , TP53 ) revealed unique oncogenic programs (mutational, structural, epimutational) that influence pharmacologic response in drug repositioning protocols; this genome dissection approach highlights the potential of individual mutations to induce extensive molecular heterogeneity and could facilitate advancement of therapeutic response in this dismal disease. (H epatology 2018).
Development of an in vivo mouse model of discogenic low back pain
Shi, Changgui , Das, Vaskar, Li, Xin , Kc, Ranjan , Qiu, Sujun , O‐Sullivan, InSug , Ripper, Richard, Kroin, Jeffrey S., Mwale, Fackson , Wallace, Atiyayein A., Zhu, Bingqian , Wijnen, André J. van , Ji, Ming-liang , Lü, Jun , Votta‐Velis, Gina , Yuan, Wen, Im, Hee‐Jeong , van Wijnen, Andre J , Zhao, Lan , Yuan, Wen

Journal of Cellular Physiology | November 18, 2017 | Volume: 233 | Issue: 10 | Pages: 6589-6602

10.1002/jcp.26280 | PMID 29150945 Get It

Discogenic low back pain (DLBP) is extremely common and costly. Effective treatments are lacking due to DLBP's unknown pathogenesis. Currently, there are no in vivo mouse models of DLBP, which restricts research in this field. The aim of this study was to establish a reliable DLBP model in mouse that captures the pathological changes in the disc and allows longitudinal pain testing. The model was generated by puncturing the mouse lumbar discs (L4/5, L5/6, and L6/S1) and removing the nucleus pulposus using a microscalpel under the microscope. Histology, molecular pathways, and pain‐related behaviors were examined. Over 12 weeks post‐surgery, animals displayed the mechanical, heat, and cold hyperalgesia along with decreased burrowing and rearing. Histology showed progressive disc degeneration with loss of disc height, nucleus pulposus reduction, proteoglycan depletion, and annular fibrotic disorganization. Immunohistochemistry revealed a substantial increase in inflammatory mediators at 2 and 4 weeks. Nerve growth factor was upregulated from 2 weeks to the end of the experiment. Nerve fiber ingrowth was induced in the injured discs after 4 weeks. Disc‐puncture also produced an upregulation of neuropeptides in dorsal root ganglia neurons and an activation of glial cells in the spinal cord dorsal horn. These findings indicate that the cellular and structural changes in discs, as well as peripheral and central nervous system plasticity, paralleled persistent, and robust behavioral pain responses. Therefore, this mouse DLBP model could be used to investigate mechanisms underlying discogenic pain, thereby facilitating effective drug screening and development of treatments for DLBP.
CRISPR Genome-Wide Screening Identifies Dependence on the Proteasome Subunit PSMC6 for Bortezomib Sensitivity in Multiple Myeloma
Shi, Chang-Xin, Zhu, Yuan Xiao , Bruins, Laura A., Jedlowski, Patrick , Votruba, Patrick G., Luo, Moulun , Ahmann, Jonathan M., Braggio, Esteban , Stewart, A. Keith, Stewart, Robert A, Ahmann, Jonathan, Braggio, Esteban , Kortüm, K. Martin , Stewart, Robert

Molecular Cancer Therapeutics | September 27, 2017 | Volume: 16 | Issue: 12 | Pages: 2862-2870

10.1158/1535-7163.mct-17-0130 | PMID 28958990 Get It

Abstract Bortezomib is highly effective in the treatment of multiple myeloma; however, emergent drug resistance is common. Consequently, we employed CRISPR targeting 19,052 human genes to identify unbiased targets that contribute to bortezomib resistance. Specifically, we engineered an RPMI8226 multiple myeloma cell line to express Cas9 infected by lentiviral vector CRISPR library and cultured derived cells in doses of bortezomib lethal to parental cells. Sequencing was performed on surviving cells to identify inactivated genes responsible for drug resistance. From two independent whole-genome screens, we selected 31 candidate genes and constructed a second CRISPR sgRNA library, specifically targeting each of these 31 genes with four sgRNAs. After secondary screening for bortezomib resistance, the top 20 “resistance” genes were selected for individual validation. Of these 20 targets, the proteasome regulatory subunit PSMC6 was the only gene validated to reproducibly confer bortezomib resistance. We confirmed that inhibition of chymotrypsin-like proteasome activity by bortezomib was significantly reduced in cells lacking PSMC6. We individually investigated other members of the PSMC group (PSMC1 to 5) and found that deficiency in each of those subunits also imparts bortezomib resistance. We found 36 mutations in 19S proteasome subunits out of 895 patients in the IA10 release of the CoMMpass study (https://themmrf.org). Our findings demonstrate that the PSMC6 subunit is the most prominent target required for bortezomib sensitivity in multiple myeloma cells and should be examined in drug-refractory populations. Mol Cancer Ther; 16(12); 2862–70. ©2017 AACR.