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346 citation(s) found for "Qi, Tao".

An overview of electronic health information management systems quality assessment
Mair, Frances S , Bouamrane, Matt-Mouley , Tao, Cui

Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems | November 7, 2012 | Volume: No volume available | Issue: No issue available | Pages: 37-46

10.1145/2389672.2389680 Get It

Modeling UIMA type system using web ontology language
Wu, Stephen , Liu, Hongfang , Tao, Cui , Chute, Christopher G.

Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems | November 7, 2012 | Volume: No volume available | Issue: No issue available | Pages: 31-36

10.1145/2389672.2389679 Get It

Receptor activity‐modifying protein‐dependent impairment of calcitonin receptor splice variant Δ(1–47)hCT(a)function
Qi, Tao, Dong, Maoqing , Watkins, HA, Wootten, Denise , Miller, L J, Hay, Debbie L. , Watkins, Harriet A.

British Journal of Pharmacology | September 5, 2012 | Volume: 168 | Issue: 3 | Pages: 644-657

10.1111/j.1476-5381.2012.02197.x | PMID 22946511 Get It

Background and PurposeAlternative splicing expands proteome diversity toGPCRs. Distinct receptor variants have been identified for a secretin familyGPCR, the calcitonin receptor (CTR). The possible functional contributions of these receptor variants are further altered by their potential interactions with receptor activity‐modifying proteins (RAMPs). One variant of the humanCTRlacks the first 47 residues at itsNterminus [Δ(1–47)hCT(a)]. However, very little is known about the pharmacology of this variant or its ability to interact withRAMPsto form amylin receptors.Experimental ApproachΔ(1–47)hCT(a)was characterized both with and withoutRAMPsinCos7and/orHEK293Scells. The receptor expression (ELISAassays) and function (cAMPandpERK1/2 assays) for up to six agonists and two antagonists were determined.Key ResultsDespite lacking 47 residues at theNterminus, Δ(1–47)hCT(a)was still able to express at the cell surface, but displayed a generalized reduction in peptide potency. Δ(1–47)hCT(a)retained its ability to interact withRAMP1and formed a functional amylin receptor; this also appeared to be the case withRAMP3. On the other hand, its interaction withRAMP2and resultant amylin receptor was reduced to a greater extent.Conclusions and ImplicationsΔ(1–47)hCT(a)acts as a functional receptor at the cell surface. It exhibits altered receptor function, depending on whether it associates with aRAMPand whichRAMPit interacts with. Therefore, the presence of this variant in tissues will potentially contribute to altered peptide binding and signalling, depending on theRAMPdistribution in tissues.
Abstract LB-423: Whole genome comparisons of pre- and post- aromatase inhibitor treatment in estrogen receptor positive breast cancer
Li, Ding, Shen, Dong , Wallis, John W., Tine, Brian Andrew Van, Crowder, Robert J., Snider, Jacqueline, Koboldt, Daniel C. , Schierding, William , McMichael, Joshua F. , Kandoth, Cyriac , Wendl, Michael C. , DeSchryver, Katherine, Allred, D. Craig, Unzeitig, Gary, Margenthaler, Julie, Babiera, Gildy V., Marcom, P. Kelly, Guenther, J. Michael, Leitch, Marilyn , Tao, Yu , Fulton, Lucinda , Fulton, Robert S. , Oberkfell, Ben, Du, Feiyu, Demeter, Ryan, Vickery, Tammi L. , McDonald, Sandra , Dooling, David J., Ota, David M., Chang, Li‐Wei , Bose, Ron , Wilson, Richard K. , Ellis, Matthew J. , Luo, Jingqin , Suman, Vera J. , Hoog, Jeremy , Ballman, Karla V. , Chen, Ken , Miller, Christopher A. , Lu, Charles , Harris, Christopher , McLellan, Michael D. , Esserman, Laura J. , Hunt, Kelly K. , Olson, John A. , Harrison, Michelle , Griffith, Malachi , Watson, Mark A. , Ley, Timothy James , Mardis, Elaine R.

Cancer Research | August 13, 2012 | Volume: 72 | Issue: 8_Supplement | Pages: LB-423-LB-423

10.1158/1538-7445.am2012-lb-423 Get It

Abstract Background: Estrogen receptors are over-expressed in around 70% of breast cancer cases. The genetic changes that occur during aromatase inhibitor (AI) treatment are not well understood and may differ depending upon the patient's response phenotype. Methods: We performed whole genome sequencing (WGS) of matched blood, pre-treatment, and post-treatment biopsy samples from 22 estrogen receptor positive breast cancer patients treated with neoadjuvant aromatase inhibitors. For 5 cases, we performed the whole genome sequencing (WGS) on patients’ matched normal, two pre AI-treatment, and two post AI-treatment DNA isolates from biopsy samples. We validated all putative coding and non-coding somatic mutations using deep sequencing. By comparing the validated somatic mutations from pre- and post- AI treatment biopsy samples, we were able to determine the alterations in the tumor genomes. In every case we defined the clonal architecture of each pair of pre-treatment and post-treatment biopsy samples by comparing the variant allele frequencies from thousands of validated somatic mutations. Results: Comparisons of the two pre AI-treatment biopsy samples from the same patient indicates that the variant allele frequencies of mutations showed high concordances in all 5 cases, 0.74 to 0.95 range of correlation coefficient. Only a small percentage of somatic mutations were detected in one pre-treatment sample and not the other (4.65% overall). In comparing the somatic variations between pre-treatment and matched post-treatment biopsy samples in 22 cases, we found that patients with good clinical response to AI treatment retained known driver mutations only in their pre-treatment tumors. Conversely, those patients with poor clinical response presented new driver mutations in their post-treatment samples. Furthermore, the variant allele frequency for most mutated genes decreased in post AI treatment samples for patients with good AI treatment response; on the contrary, the variant allele frequency increased for patients with poor clinical response. Conclusions: From WGS of matched normal, pre-treatment, and post-treatment biopsy samples, we identified new driver genes mutated in patients with poor clinical response, while patients with good clinical response had lost mutated driver genes in their post-treatment biopsy samples. The genetic landscape revealed by WGS of pre-treatment and post-treatment biopsy samples reveals mutational repertoires are remodeled by AI therapy. This finding suggests deep sequencing of AI treated samples will be necessary to reveal the complete complement of mutations present in a patient's tumor. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 103rd Annual Meeting of the American Association for Cancer Research; 2012 Mar 31-Apr 4; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2012;72(8 Suppl):Abstract nr LB-423. doi:1538-7445.AM2012-LB-423
Phosphorylation of dedicator of cytokinesis 1 (Dock180) at tyrosine residue Y722 by Src family kinases mediates EGFRvIII-driven glioblastoma tumorigenesis
Hu, Bo , Jarzynka, Michael J., Li, Yanxin , Keezer, Susan, Johns, Terrance G. , Tang, Careen K., Hamilton, Ronald L. , Fenton, Tim R. , Cheng, Tao , Furnari, Frank B. , Cavenee, Webster K. , Cheng, Shi‐Yuan , Feng, Haizhong , Vuori, Kristiina , Nishikawa, Ryo , Sarkaria, Jann N. , Cheng, Shi-Yuan , Fenton, Tim R

Proceedings of the National Academy of Sciences | February 8, 2012 | Volume: 109 | Issue: 8 | Pages: 3018-3023

10.1073/pnas.1121457109 | PMID 22323579 Get It

Glioblastoma, the most common primary malignant cancer of the brain, is characterized by rapid tumor growth and infiltration of tumor cells throughout the brain. These traits cause glioblastomas to be highly resistant to current therapies with a resultant poor prognosis. Although aberrant oncogenic signaling driven by signature genetic alterations, such as EGF receptor (EGFR) gene amplification and mutation, plays a major role in glioblastoma pathogenesis, the responsible downstream mechanisms remain less clear. Here, we report that EGFRvIII (also known as ΔEGFR and de2-7EGFR), a constitutively active EGFR mutant that is frequently co-overexpressed with EGFR in human glioblastoma, promotes tumorigenesis through Src family kinase (SFK)-dependent phosphorylation of Dock180, a guanine nucleotide exchange factor for Rac1. EGFRvIII induces phosphorylation of Dock180 at tyrosine residue 722 (Dock180 Y722 ) and stimulates Rac1-signaling, glioblastoma cell survival and migration. Consistent with this being causal, siRNA knockdown of Dock180 or expression of a Dock180 Y722F mutant inhibits each of these EGFRvIII-stimulated activities. The SFKs, Src, Fyn, and Lyn, induce phosphorylation of Dock180 Y722 and inhibition of these SFKs by pharmacological inhibitors or shRNA depletion markedly attenuates EGFRvIII-induced phosphorylation of Dock180 Y722 , Rac1 activity, and glioblastoma cell migration. Finally, phosphorylated Dock180 Y722 is coexpressed with EGFRvIII and phosphorylated Src Y418 in clinical specimens, and such coexpression correlates with an extremely poor survival in glioblastoma patients. These results suggest that targeting the SFK-p-Dock180 Y722 -Rac1 signaling pathway may offer a novel therapeutic strategy for glioblastomas with EGFRvIII overexpression.
Towards event sequence representation, reasoning and visualization for EHR data
Wongsuphasawat, Krist, Clark, Kimberly , Plaisant, Catherine , Tao, Cui , Shneiderman, Ben , Chute, Christopher G.

Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium | January 31, 2012 | Volume: No volume available | Issue: No issue available | Pages: 801-806

10.1145/2110363.2110461 Get It

Toward semantic web based knowledge representation and extraction from electronic health records
Pathak, Jyotishman , Welch, Susan, Huff, Stanley M. , Tao, Cui , Bouamrane, Matt-Mouley , Chute, Christopher G.

Proceedings of the first international workshop on Managing interoperability and complexity in health systems | November 16, 2011 | Volume: No volume available | Issue: No issue available | Pages: 75-78

10.1145/2064747.2064765 Get It

Managing complexity in pre-operative information management systems
Bouamrane, Matt-Mouley , Mair, Frances S , Tao, Cui

Proceedings of the first international workshop on Managing interoperability and complexity in health systems | November 16, 2011 | Volume: No volume available | Issue: No issue available | Pages: 3-10

10.1145/2064747.2064751 Get It

Managing interoperability and complexity inhealth systems
Bouamrane, Matt-Mouley , Tao, Cui

Proceedings of the 20th ACM international conference on Information and knowledge management | November 16, 2011 | Volume: No volume available | Issue: No issue available | Pages: 2635-2636

10.1145/2063576.2064050 Get It

Gemcitabine Plus nab -Paclitaxel Is an Active Regimen in Patients With Advanced Pancreatic Cancer: A Phase I/II Trial
Hoff, Daniel D. Von , Ramanathan, Ramesh K., Laheru, Daniel A. , Smith, Lon, Wood, Tina E., Korn, Ronald L. , Desai, Neil, Trieu, Vuong , Iglesias, J. L. Mesías, Zhang, Hui , Soon‐Shiong, Patrick , Shi, Tao , Rajeshkumar, N.V., Maitra, Anirban , Hidalgo, Manuel , Borad, Mitesh J.

Journal of Clinical Oncology | October 4, 2011 | Volume: 29 | Issue: 34 | Pages: 4548-4554

10.1200/jco.2011.36.5742 | PMID 21969517 Get It

Purpose The trial objectives were to identify the maximum-tolerated dose (MTD) of first-line gemcitabine plus nab-paclitaxel in metastatic pancreatic adenocarcinoma and to provide efficacy and safety data. Additional objectives were to evaluate positron emission tomography (PET) scan response, secreted protein acidic and rich in cysteine (SPARC), and CA19-9 levels in relation to efficacy. Subsequent preclinical studies investigated the changes involving the pancreatic stroma and drug uptake. Patients and Methods Patients with previously untreated advanced pancreatic cancer were treated with 100, 125, or 150 mg/m 2 nab-paclitaxel followed by gemcitabine 1,000 mg/m 2 on days 1, 8, and 15 every 28 days. In the preclinical study, mice were implanted with human pancreatic cancers and treated with study agents. Results A total of 20, 44, and three patients received nab-paclitaxel at 100, 125, and 150 mg/m 2 , respectively. The MTD was 1,000 mg/m 2 of gemcitabine plus 125 mg/m 2 of nab-paclitaxel once a week for 3 weeks, every 28 days. Dose-limiting toxicities were sepsis and neutropenia. At the MTD, the response rate was 48%, with 12.2 median months of overall survival (OS) and 48% 1-year survival. Improved OS was observed in patients who had a complete metabolic response on [ 18 F]fluorodeoxyglucose PET. Decreases in CA19-9 levels were correlated with increased response rate, progression-free survival, and OS. SPARC in the stroma, but not in the tumor, was correlated with improved survival. In mice with human pancreatic cancer xenografts, nab-paclitaxel alone and in combination with gemcitabine depleted the desmoplastic stroma. The intratumoral concentration of gemcitabine was increased by 2.8-fold in mice receiving nab-paclitaxel plus gemcitabine versus those receiving gemcitabine alone. Conclusion The regimen of nab-paclitaxel plus gemcitabine has tolerable adverse effects with substantial antitumor activity, warranting phase III evaluation.