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224 citation(s) found for "Yu-Rice, Yi".

Whole Exome Sequencing, Familial Genomic Triangulation, and Systems Biology Converge to Identify a Novel Nonsense Mutation inTAB2-encoded TGF-beta Activated Kinase 1 in a Child with Polyvalvular Syndrome
Ackerman, Jaeger P., Smestad, John , Tester, David J. , Qureshi, M. Yasir , Crabb, Beau, Mendelsohn, Nancy J., Ackerman, Michael J. , Smestad, John A, Qureshi, Muhammad Y , Smestad, John

Congenital Heart Disease | July 25, 2016 | Volume: 11 | Issue: 5 | Pages: 452-461

10.1111/chd.12400 | PMID 27452334 Get It

Leveraging Health Care Simulation Technology for Human Factors Research
Deutsch, Ellen S. , Dong, Yue , Halamek, Louis P. , Rosen, Michael A. , Taekman, Jeffrey M. , Rice, John, Dong, Yue

Human Factors: The Journal of the Human Factors and Ergonomics Society | June 6, 2016 | Volume: 58 | Issue: 7 | Pages: 1082-1095

10.1177/0018720816650781 | PMID 27268996 Get It

Objective: We describe health care simulation, designed primarily for training, and provide examples of how human factors experts can collaborate with health care professionals and simulationists—experts in the design and implementation of simulation—to use contemporary simulation to improve health care delivery. Background: The need—and the opportunity—to apply human factors expertise in efforts to achieve improved health outcomes has never been greater. Health care is a complex adaptive system, and simulation is an effective and flexible tool that can be used by human factors experts to better understand and improve individual, team, and system performance within health care. Method: Expert opinion is presented, based on a panel delivered during the 2014 Human Factors and Ergonomics Society Health Care Symposium. Results: Diverse simulators, physically or virtually representing humans or human organs, and simulation applications in education, research, and systems analysis that may be of use to human factors experts are presented. Examples of simulation designed to improve individual, team, and system performance are provided, as are applications in computational modeling, research, and lifelong learning. Conclusion: The adoption or adaptation of current and future training and assessment simulation technologies and facilities provides opportunities for human factors research and engineering, with benefits for health care safety, quality, resilience, and efficiency. Application: Human factors experts, health care providers, and simulationists can use contemporary simulation equipment and techniques to study and improve health care delivery.
Molecular and Functional Characterization of RareCACNA1CVariants in Sudden Unexplained Death in the Young
Sutphin, Brittan, Boczek, Nicole J. , Barajas-Martínez, Héctor , Hu, Dan , Ye, Dan , Tester, David J. , Ackerman, Michael J. , Sutphin, Brittan S, Antzelevitch, Charles

Congenital Heart Disease | May 24, 2016 | Volume: 11 | Issue: 6 | Pages: 683-692

10.1111/chd.12371 | PMID 27218670 Get It

Understanding inherited genetic risk of adult glioma – a review
Rice, Terri, Molinaro, Annette M. , Eckel‐Passow, Jeanette E. , Walsh, Kyle M. , Barnholtz‐Sloan, Jill S. , Francis, Stephen , Wiemels, Joseph L. , Jenkins, Robert B. , Wrensch, Margaret , Barnholtz-Sloan, Jill, Francis, Stephen S, Wiemels, Joseph, Wiencke, John K. , Wrensch, Margaret R, Lachance, Daniel Honore , Molinaro, Annette M. , Ostrom, Quinn T. , Barnholtz-Sloan, Jill S , Francis, Stephen S

Neuro-Oncology Practice | February 8, 2016 | Volume: 3 | Issue: 1 | Pages: 10-16

10.1093/nop/npv026 | PMID 26941959 Get It

Abstract During the past six years, researchers have made major progress identifying common inherited genetic variation that increases risk for primary adult glioma. This paper summarizes knowledge about rare familial cancer syndromes that include adult glioma and reviews the available literature on the more recently discovered common inherited variation. Ten independent inherited variants in eight chromosomal regions have been convincingly associated with increased risk for adult glioma. Most of these variants increase relative risk of primary adult glioma by 20% to 40%, but the TP53 variant rs78378222 confers a two-fold relative risk (ie, 200%), and rs557505857 on chromosome 8 confers a six-fold relative risk of IDH-mutated astrocytomas and oligodendroglial tumors (ie, 600%). Even with a six-fold relative risk, the overall risk of developing adult glioma is too low for screening for the high-risk variant on chromosome 8. Future studies will help clarify which inherited adult glioma risk variants are associated with subtypes defined by histology and/or acquired tumor mutations. This review also provides an information sheet for primary adult glioma patients and their families.
A Heritable Missense Polymorphism in CDKN2A Confers Strong Risk of Childhood Acute Lymphoblastic Leukemia and Is Preferentially Selected during Clonal Evolution
Walsh, Kyle M. , Smith, Adam J. de , Hansen, Helen M. , Smirnov, Ivan, Gonseth, Semira , Endicott, Alyson , Xiao, Jianqiao, Rice, Terri, Fu, Cecilia, McCoy, Lucie , Eckel‐Passow, Jeanette E. , Jenkins, Robert B. , Wrensch, Margaret , Metayer, Catherine , Wiemels, Joseph L. , Lachance, Daniel Honore , Wiencke, John K. , Ma, Xiaomei

Cancer Research | November 2, 2015 | Volume: 75 | Issue: 22 | Pages: 4884-4894

10.1158/0008-5472.can-15-1105 | PMID 26527286 Get It

Abstract Genome-wide association studies (GWAS) have identified SNPs in six genes that are associated with childhood acute lymphoblastic leukemia (ALL). A lead SNP was found to occur on chromosome 9p21.3, a region that is deleted in 30% of childhood ALLs, suggesting the presence of causal polymorphisms linked to ALL risk. We used SNP genotyping and imputation-based fine-mapping of a multiethnic ALL case–control population (Ncases = 1,464, Ncontrols = 3,279) to identify variants of large effect within 9p21.3. We identified a CDKN2A missense variant (rs3731249) with 2% allele frequency in controls that confers three-fold increased risk of ALL in children of European ancestry (OR, 2.99; P = 1.51 × 10−9) and Hispanic children (OR, 2.77; P = 3.78 × 10−4). Moreover, of 17 patients whose tumors displayed allelic imbalance at CDKN2A, 14 preferentially retained the risk allele and lost the protective allele (PBinomial = 0.006), suggesting that the risk allele provides a selective advantage during tumor growth. Notably, the CDKN2A variant was not significantly associated with melanoma, glioblastoma, or pancreatic cancer risk, implying that this polymorphism specifically confers ALL risk but not general cancer risk. Taken together, our findings demonstrate that coding polymorphisms of large effect can underlie GWAS “hits” and that inherited polymorphisms may undergo directional selection during clonal expansion of tumors. Cancer Res; 75(22); 4884–94. ©2015 AACR.
Identification and Functional Characterization of a Novel CACNA1C -Mediated Cardiac Disorder Characterized by Prolonged QT Intervals With Hypertrophic Cardiomyopathy, Congenital Heart Defects, and Sudden Cardi
Boczek, Nicole J. , Ye, Dan , Jin, Fang , Tester, David J. , Kelcher, April M. Huseby , Bos, J. Martijn , Johnson, Aaron J. , Kanter, Ronald J. , Ackerman, Michael J. , Huseby, April, Kanter, Ronald, Johnson, Aaron J. , Kelcher, April M H , Bos, Johan M

Circulation: Arrhythmia and Electrophysiology | October 20, 2015 | Volume: 8 | Issue: 5 | Pages: 1122-1132

10.1161/circep.115.002745 | PMID 26253506 Get It

Background— A portion of sudden cardiac deaths can be attributed to structural heart diseases, such as hypertrophic cardiomyopathy (HCM) or cardiac channelopathies such as long-QT syndrome (LQTS); however, the underlying molecular mechanisms are distinct. Here, we identify a novel CACNA1C missense mutation with mixed loss-of-function/gain-of-function responsible for a complex phenotype of LQTS, HCM, sudden cardiac death, and congenital heart defects. Methods and Results— Whole exome sequencing in combination with Ingenuity variant analysis was completed on 3 affected individuals and 1 unaffected individual from a large pedigree with concomitant LQTS, HCM, and congenital heart defects and identified a novel CACNA1C mutation, p.Arg518Cys, as the most likely candidate mutation. Mutational analysis of exon 12 of CACNA1C was completed on 5 additional patients with a similar phenotype of LQTS plus a personal or family history of HCM-like phenotypes and identified 2 additional pedigrees with mutations at the same position, p.Arg518Cys/His. Whole cell patch clamp technique was used to assess the electrophysiological effects of the identified mutations in Ca V 1.2 and revealed a complex phenotype, including loss of current density and inactivation in combination with increased window and late current. Conclusions— Through whole exome sequencing and expanded cohort screening, we identified a novel genetic substrate p.Arg518Cys/His-CACNA1C, in patients with a complex phenotype including LQTS, HCM, and congenital heart defects annotated as cardiac-only Timothy syndrome. Our electrophysiological studies, identification of mutations at the same amino acid position in multiple pedigrees, and cosegregation with disease in these pedigrees provide evidence that p.Arg518Cys/His is the pathogenic substrate for the observed phenotype.
HSulf-1 deficiency dictates a metabolic reprograming of glycolysis and TCA cycle in ovarian cancer
Roy, Debarshi , Camacho-Pereira, Juliana , Khurana, Ashwani, Chini, Eduardo N. , Yang, Lifeng , Baddour, Joelle, Stilles, Katherine, Padmabandu, Seth, Leung, Sam, Lowe, Val J. , Dierks, Thomas , Hammond, Edward , Dredge, Keith , Nagrath, Deepak , Shridhar, Viji , Mondal, Susmita, Chini, Eduardo, Mondal, Susmita , Kalloger, Steve E. , Gilks, C. Blake

Oncotarget | September 29, 2015 | Volume: 6 | Issue: 32 | Pages: 33705-33719

10.18632/oncotarget.5605 | PMID 26378042 Get It

Abstract 951: CB-5083 is a novel first in class p97 inhibitor that disrupts cellular protein homeostasis and demonstrates anti-tumor activity in solid and hematological models
Moigne, Ronan Le , Wong, Steve , Soriano, Ferdie, Djakovic, Stevan, Menon, Mary-Kamala, Rice, Julie , Wang, Jinhai , Soly, Szerenke Kiss Von, Kumar, Brajesh, Chesi, Marta , Zhou, Han-Jie , Wustrow, David J., Rolfe, Mark , Yakes, F. Michael, Junior, Eduardo Alves do Valle , Anderson, Daniel J. , Yao, Bing , Bergsagel, P. Leif

Cancer Research | May 4, 2015 | Volume: 74 | Issue: 19_Supplement | Pages: 951-951

10.1158/1538-7445.am2014-951 Get It

Abstract Background: The AAA-ATPase p97/VCP facilitates the extraction and degradation of ubiquitinated proteins by converting chemical energy into mechanical force. p97 is closely involved in several facets of protein homeostasis, including ubiquitin-dependent protein degradation, endoplasmic reticulum-associated degradation (ERAD) and autophagy. p97 has been increasingly linked to cancer: it showed elevated protein expression in tumors, it can mediate the degradation of proteins in cancer-relevant pathways and is required for orchestrating the ubiquitin-governed DNA-damage response. In this context, p97 inhibitors may have an advantage versus other protein homeostasis inhibitors and may be active in solid tumors where 26S proteasome inhibitors, bortezomib and carfilzomib, have shown poor efficacy. We report here p97 inhibition as a novel approach to exploit cancer cell addiction to protein homeostatic mechanisms. Results: We have discovered novel small molecule inhibitors of p97 ATPase activity with nanomolar enzymatic and cellular potency. In cellular models, treatment of cancer cells with our lead compound CB-5083 causes disruptions in specific p97 functions, including ubiquitin-dependent protein degradation, ERAD, endocytosis and autophagy. In mouse models, CB-5083 is orally bio-available and causes rapid and sustained accumulation of poly-ubiquitin in tumor xenografts after a single administration. Concurrent with increases in polyubiquitin levels, activation of ER stress response pathways and induction of apoptosis markers are also observed. Sub-chronic oral administration of CB-5083 is generally well-tolerated with <10% body weight loss and results in potent tumor growth inhibition in several solid tumor xenograft models. This result is in marked contrast to proteasome inhibitors that are inactive in the same solid tumor models. In the Vk*MYC transgenic mouse model of multiple myeloma, CB-5083 treatment resulted in >50% reduction in M-spike. Additional efforts are focused on the development of translational assays to monitor p97 target engagement and antitumor efficacy in upcoming clinical trials of CB-5083. Conclusion: These data demonstrate that CB-5083 is a potent inhibitor of p97 that translates to tumor growth inhibition in multiple rodent models of human cancer. Furthermore, CB-5083 appears to exhibit greater potency over current proteasome inhibitors that further validate targeting p97 and protein homeostasis in the treatment of cancer. Citation Format: Ronan Le Moigne, Steve Wong, Ferdie Soriano, Eduardo Valle, Daniel J. Anderson, Stevan Djakovic, Mary-Kamala Menon, Bing Yao, Julie Rice, Jinhai Wang, Szerenke Kiss Von Soly, Brajesh Kumar, Marta Chesi, P. Leif Bergsagel, Han-Jie Zhou, David Wustrow, Mark Rolfe, F. Michael Yakes. CB-5083 is a novel first in class p97 inhibitor that disrupts cellular protein homeostasis and demonstrates anti-tumor activity in solid and hematological models. [abstract]. In: Proceedings of the 105th Annual Meeting of the American Association for Cancer Research; 2014 Apr 5-9; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2014;74(19 Suppl):Abstract nr 951. doi:10.1158/1538-7445.AM2014-951
Broadly neutralizing antibodies abrogate established hepatitis C virus infection
Dorner, Marcus , Mommersteeg, Michiel C. , Xiao, Jing , Balazs, Alejandro B. , Robbins, Justin B., Winer, Benjamin Y. , Gerges, Sherif , Vega, Kevin, Labitt, Rachael N. , Donovan, Bridget M., Giang, Erick, Krishnan, Anuradha , Chiriboga, Luis , Baltimore, David , Law, Mansun , Rice, Charles M. , Ploß, Alexander , Charlton, Michael R, Jong, Ype P. de , Charlton, Michael , Burton, Dennis R.

Science Translational Medicine | September 17, 2014 | Volume: 6 | Issue: 254 | Pages: No page available

10.1126/scitranslmed.3009512 | PMID 25232181 Get It

HCV-specific neutralizing antibodies protect humanized mice from challenge and suppress established infections.