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136 citation(s) found for "Kohli, Manish".

Serum proteomics guided discovery of predictive biomarkers of response to androgen ablation (AA) in prostate cancer.
Oberg, Ann L. , Riska, Shaun M., Sahasrabudhe, Deepak M. , Kohli, Manish , Mahoney, Douglas W. , Zenka, Roman M. , Zhang, Sheng

Journal of Clinical Oncology | February 23, 2017 | Volume: 30 | Issue: 5_suppl | Pages: 104-104

10.1200/jco.2012.30.5_suppl.104 Get It

104 Background: Currently there are no serum predictive markers of response to AA. We used a proteomic based analytic approach to identify candidates. Methods: Serum from three non-localized prostate cancer cohorts was analyzed. The first included15 paired untreated hormone-sensitive “pre-AA” and 3-month “post-AA” specimens; the second included 10 “early AA failure” (median time to AA failure:11 months) and the third included 10 “late AA failure” specimens (median time to AA failure: 95 months). Proteomic analysis was performed with isobaric mass tags for relative and absolute quanititation (iTRAQ) analyzed by reverse-phase liquid chromatography coupled to tandem mass spectrometry (LC/MS/MS). Differentially expressed candidate proteins were identified by comparisons of (i) paired pre/post-AA proteomes and (ii) post-AA proteome with the combined AA failure cohorts at a False Discovery Rate of 0.2. ELISA assays were used to verify candidate markers in a second stored aliquot of first cohort specimens. This cohort was followed for AA failure. Association of post-AA ELISA levels of candidate markers with time to AA failure was performed using Cox proportional hazards regression, summarized as relative risk (RR) for AA failure. Results: Median PSA in pre/post-AA first cohort were 3.15 ng/ml and 0.29 ng/ml. Median PSA in the second and third cohorts were 27.3 and 4.3 ng/ml. Between post-AA and AA failure cohorts, 149 proteins were differentially expressed. Between early and late AA failure 98 proteins were differentially expressed; 47 proteins were common in both comparisons. ELISA assays verified expression levels of 2/47 proteins in the first cohort; zinc alpha-2 macroglobulin (ZAG), and Neuropilin-2 (NPL2). Median change in ZAG decreased by 2073.5 ng/ml (post versus pre-AA) while median change in NPL2 levels increased by 2.9 ng/ml. After a median follow-up of 43 months from the post-AA time-point, 4/15 first cohort subjects had failed AA. The RR of AA failure for ZAG levels below the median change was 3.8 (95% CI: 0.4-37) and 3.0 (95% CI: 0.3-29) for NPL2. Conclusions: A global proteomic analysis identified ZAG and NPL2 as candidate serum predictive markers of AA response which needs further validation.
Exploratory study of a KLK2 polymorphism as a prognostic marker in prostate cancer
Kohli, Manish , Rothberg, Paul G., Feng, Changyong , Messing, Edward M. , Joseph, Jean, Rao, Sreevidya Sadasiva, Hendershot, Allison , Sahsrabudhe, Deepak, Kohli, Manish

Cancer Biomarkers | January 31, 2017 | Volume: 7 | Issue: 2 | Pages: 101-108

10.3233/cbm-2010-0152 | PMID 21178268 Get It

Germline genetic variation in JAK2 as a prognostic marker in castration‐resistant prostate cancer
Zhang, Ben Y., Riska, Shaun M., Costello, Brian A. , Kohli, Rhea, Quevedo, J. Fernando , Kohli, Manish , Mahoney, Douglas W. , Quevedo, Jorge F, Cerhan, James R. , Kohli, Manish

BJU International | July 13, 2016 | Volume: 119 | Issue: 3 | Pages: 489-495

10.1111/bju.13584 | PMID 27410686 Get It

Objectives To evaluate the prognostic significance of germline variation in candidate genes in patients with castration‐resistant prostate cancer (CRPC). Methods Germline DNA was extracted from peripheral blood mononuclear cells of patients with CRPC enrolled in a clinically annotated registry. Fourteen candidate genes implicated in either initiation or progression of prostate cancer were tagged using single nucleotide polymorphisms (SNPs) from HapMap with a minor allele frequency of >5%. The primary endpoint was overall survival (OS), defined as time from development of CRPC to death. Principal component analysis was used for gene levels tests of significance. For SNP‐level results the per allele hazard ratios (HRs) and 95% confidence intervals (CIs) under the additive allele model were estimated using Cox regression, adjusted for age at CRPC and Gleason score (GS). Results A total of 240 patients with CRPC were genotyped (14 genes; 84 SNPs). The median (range) age of the cohort was 69 (43–93) years. The GS distribution was 55% with GS ≥8, 32% with GS = 7 and 13% with GS <7 or unknown. The median (interquartile range) time from castration resistance to death for the cohort was 2.67 (1.6–4.07) years (144 deaths). At the gene level, a single gene, JAK2 was associated with OS ( P < 0.01), and 11 of 18 JAK2 SNPs were individually associated with OS after adjustment for age and GS. A multivariate model consisting of age, GS, rs2149556 (HR 0.67; 95% CI 0.38–1.18) and rs4372063 (HR 2.17; 95% CI 1.25–3.76) was constructed to predict survival in patients with CRPC (concordance of 0.69, P < 3.2 × 10 −9 ). Conclusions Germline variation in the JAK2 gene was associated with survival in patients with CRPC and warrants further validation as a potential prognostic biomarker.
Common Genetic Variation in CYP17A1 and Response to Abiraterone Acetate in Patients with Metastatic Castration-Resistant Prostate Cancer
Binder, Moritz , Zhang, Ben , Kohli, Rhea, Kohli, Tanvi, Kohli, Manish , Zhang, Ben Y., Hillman, David W. , Lee, Adam , Binder, Moritz , Kohli, Manish

International Journal of Molecular Sciences | July 11, 2016 | Volume: 17 | Issue: 7 | Pages: 1097

10.3390/ijms17071097 | PMID 27409606 Get It

Treatment with abiraterone acetate and prednisone (AA/P) prolongs survival in metastatic castration-resistant prostate cancer (mCRPC) patients. We evaluated the genetic variation in CYP17A1 as predictive of response to AA/P. A prospective collection of germline DNA prior to AA/P initiation and follow-up of a mCRPC cohort was performed. Five common single-nucleotide polymorphisms (SNPs) in CYP17A1 identified using a haplotype-based tagging algorithm were genotyped. Clinical outcomes included biochemical response and time to biochemical progression on AA/P. Logistic regression was used to assess the association between tag SNPs and biochemical response. Proportional hazards regression was used to assess the association between tag SNPs and time to biochemical progression. Odds or hazard ratio per minor allele were estimated and p-values below 0.05 were considered statistically significant. Germline DNA was successfully genotyped for four tag SNPs in 87 patients. The median age was 73 years (54–90); the median prostate-specific antigen was 66 ng/dL (0.1–99.9). A single SNP, rs2486758, was associated with lower odds of experiencing a biochemical response (Odds ratio 0.22, 95% confidence interval 0.07–0.63, p = 0.005) and a shorter time to biochemical progression (Hazard ratio 2.23, 95% confidence interval 1.39–3.56, p < 0.001). This tag SNP located in the promoter region of CYP17A1 will need further validation as a predictive biomarker for AA/P therapy.
Alterations of androgen receptor-regulated enhancer RNAs (eRNAs) contribute to enzalutamide resistance in castration-resistant prostate cancer
Zhao, Jingwen , Wang, Liguo , Karnes, R. Jeffrey , Wang, Guixia , Kohli, Manish , Zhao, Yu , Zhang, Jun , Huang, Haojie , Wang, Liguo

Oncotarget | May 23, 2016 | Volume: 7 | Issue: 25 | Pages: 38551-38565

10.18632/oncotarget.9535 | PMID 27221037 Get It

Copy number variations in urine cell free DNA as biomarkers in advanced prostate cancer
Xia, Yun , Huang, Chiang‐Ching , Dittmar, Rachel L. , Du, Meijun , Liu, Hongyan , Shenoy, Niraj , Kohli, Manish , Wang, Yuan , Wang, Liang , Kohli, Manish , Shenoy, Niraj

Oncotarget | April 27, 2016 | Volume: 7 | Issue: 24 | Pages: 35818-35831

10.18632/oncotarget.9027 | PMID 27127882 Get It

Docetaxel As Monotherapy or Combined With Ramucirumab or Icrucumab in Second-Line Treatment for Locally Advanced or Metastatic Urothelial Carcinoma: An Open-Label, Three-Arm, Randomized Controlled Phase II Trial
Petrylak, Daniel P. , Tagawa, Scott T. , Eisen, Andrea , Canil, Christina , Burke, John M. , Shaffer, David R. , Pan, Chong‐Xian, Aragon‐Ching, Jeanny B. , Tang, Shande, Zhang, Hui , Cavanaugh, Christopher , Gao, Ling , Walgren, Richard A., Kohli, Manish , Spira, Alexander, Yu, Evan Y., Shaffer, David, Kim, Jenny J, Aragon-Ching, Jeanny B, Quinn, David I, Vogelzang, Nicholas J. , Cavanaugh, Christopher T, Kauh, John S, Chi, Kim N, Sridhar, Srikala S , Spira, Alexander I. , Yu, Evan Y , Kim, Jaeyeon , Quinn, David I , Kauh, John Sae Wook , N., Kim , Tagawa, Scott T , Eisen, Andrea

Journal of Clinical Oncology | March 1, 2016 | Volume: 34 | Issue: 13 | Pages: 1500-1509

10.1200/jco.2015.65.0218 | PMID 26926681 Get It

Purpose This trial assessed the efficacy and safety of docetaxel monotherapy or docetaxel in combination with ramucirumab (vascular endothelial growth factor receptor 2 antibody) or icrucumab (vascular endothelial growth factor receptor 1 antibody) after progression during or within 12 months of platinum-based regimens for patients with locally advanced or metastatic urothelial carcinoma. Patients and Methods Patients were randomly assigned (1:1:1) to receive docetaxel 75 mg/m2 intravenously (IV) on day 1 of a 3-week cycle (arm A), docetaxel 75 mg/m2 IV plus ramucirumab 10 mg/kg IV on day 1 of a 3-week cycle (arm B), or docetaxel 75 mg/m2 IV on day 1 plus icrucumab 12 mg/kg IV on days 1 and 8 of a 3-week cycle (arm C). Treatment continued until disease progression or unacceptable toxicity. The primary end point was investigator-assessed progression-free survival (PFS). Results A total of 140 patients were randomly assigned and treated in arms A (n = 45), B (n = 46), or C (n = 49). PFS was significantly longer in arm B compared with arm A (median, 5.4 months; 95% CI, 3.1 to 6.9 months v 2.8 months; 95% CI, 1.9 to 3.6 months; stratified hazard ratio, 0.389; 95% CI, 0.235 to 0.643; P = .0002). Arm C did not experience improved PFS compared with arm A (1.6 months; 95% CI, 1.4 to 2.9; stratified hazard ratio, 0.863; 95% CI, 0.550 to 1.357; P = .5053). The most common grade 3 or worse adverse events (arms A, B, and C) were neutropenia (36%, 33%, and 39%), fatigue (13%, 30%, and 20%), febrile neutropenia (13%, 17%, and 6.1%), and anemia (6.7%, 13%, and 14%, respectively). Conclusion The addition of ramucirumab to docetaxel met the prespecified efficacy end point for prolonging PFS in patients with locally advanced or metastatic urothelial carcinoma receiving second-line treatment and warrants further investigation in the phase III setting.
Predicting time to castration resistance in hormone sensitive prostate cancer by a personalization algorithm based on a mechanistic model integrating patient data
Elishmereni, Moran, Shukrun, Ilan, Bevan, Graham H. , Nandy, Debashis, McKenzie, Kyle, Kohli, Manish , Agur, Zvia , McKenzie, Kyle M, Kheifetz, Yuri , Kohli, Manish

The Prostate | September 30, 2015 | Volume: 76 | Issue: 1 | Pages: 48-57

10.1002/pros.23099 | PMID 26419619 Get It

BACKGROUNDProstate cancer (PCa) is a leading cause of cancer death of men worldwide. In hormone‐sensitive prostate cancer (HSPC), androgen deprivation therapy (ADT) is widely used, but an eventual failure on ADT heralds the passage to the castration‐resistant prostate cancer (CRPC) stage. Because predicting time to failure on ADT would allow improved planning of personal treatment strategy, we aimed to develop a predictive personalization algorithm for ADT efficacy in HSPC patients.METHODSA mathematical mechanistic model for HSPC progression and treatment was developed based on the underlying disease dynamics (represented by prostate‐specific antigen; PSA) as affected by ADT. Following fine‐tuning by a dataset of ADT‐treated HSPC patients, the model was embedded in an algorithm, which predicts the patient's time to biochemical failure (BF) based on clinical metrics obtained before or early in‐treatment.RESULTSThe mechanistic model, including a tumor growth law with a dynamic power and an elaborate ADT‐resistance mechanism, successfully retrieved individual time‐courses of PSA (R2 = 0.783). Using the personal Gleason score (GS) and PSA at diagnosis, as well as PSA dynamics from 6 months after ADT onset, and given the full ADT regimen, the personalization algorithm accurately predicted the individual time to BF of ADT in 90% of patients in the retrospective cohort (R2 = 0.98).CONCLUSIONSThe algorithm we have developed, predicting biochemical failure based on routine clinical tests, could be especially useful for patients destined for short‐lived ADT responses and quick progression to CRPC. Prospective studies must validate the utility of the algorithm for clinical decision‐making. Prostate 76:48–57, 2016. © 2015 Wiley Periodicals, Inc.
Serum microRNA expression patterns that predict early treatment failure in prostate cancer patients
Preus, Leah, Yan, Li , Long, Mark D. , Morrison, Carl D., Nesline, Mary , Johnson, Candace S. , Liu, Song , Trump, Donald L. , Sucheston‐Campbell, Lara E. , Campbell, Moray J. , Singh, Prashant Kumar , Hu, Qiang , Morrison, Carl D., Koochekpour, Shahriar , Kohli, Manish , Campbell, Moray J

Oncotarget | September 16, 2015 | Volume: 5 | Issue: 3 | Pages: 824-840

10.18632/oncotarget.1776 | PMID 24583788 Get It

Plasma genetic and genomic abnormalities predict treatment response and clinical outcome in advanced prostate cancer
Xia, Shu , Du, Meijun , Nandy, Debashis, Yuan, Tiezheng , Guo, Yongchen, Tschannen, Michael, See, William A., Kilari, Deepak , Wang, Xuexia , Hovey, Raymond , Huang, Chiang‐Ching , Kohli, Manish , Dittmar, Rachel L. , Lee, Adam, Wang, Yuan , Worthey, Elizabeth A. , Jacob, Howard J. , Wang, Liang

Oncotarget | September 15, 2015 | Volume: 6 | Issue: 18 | Pages: 16411-16421

10.18632/oncotarget.3845 | PMID 25915538 Get It