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Long, Mark D.

https://orcid.org/0000-0003-1120-8176

Mayo Clinic

Roswell Park Comprehensive Cancer Center

Citations 3

Prognostic gene expression and microRNA profiling signatures and genetic alterations in primary testicular diffuse large B-cell lymphoma
Young, Ken H. , Jia, Youchao, Tzankov, Alexandar , Go, Heounjeong , Li, Ling , Zhai, Qiong-Li , Perry, Anamarija M. , Wang, Shi , Wang, Xiaoxiao , Chiu, April , Xu, Mina L. , Visco, Carlo , Yuan, Alyssa F. , Miao, Yi , Li, Jianyong , Shuai, Wen , Wang, Bangchen , Pan, Zenggang , Chen, Weina , Zhang, Shanxiang , Sohani, Aliyah R. , Ferreri, Andrés J.M. , Xu, Bing , Young, Ken H , Tzankov, Alexandar , Go, Heounjeong , Xu, Mina , Dybkaer, Karen , Withers, Henry , Li, Jianyong , Bhagat, Govind , Chen, Weina , Møller, Michael Boe , Zhan, Fenghuang , Sohani, Aliyah , Ferreri, Andrés J M , Xu, Bing , Li, Yong , Wang, Bangchen , Shi, Wenyu , Xu‐Monette, Zijun Y. , Ponzoni, Maurilio , Wang, Yafei , Dybkær, Karen , Long, Mark D. , Macias, Everardo , Bhagat, Govind , Zu, Youli , Choi, William, Montes‐Moreno, Santiago , Krieken, J. Han van , Møller, Michael , Zhan, Fenghuang , Parsons, Benjamin M. , Hsi, Eric D. , Abramson, Jeremy S. , Li, Yong

No container title available | January 6, 2025 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-5732026/v1 Get It

Abstract Primary testicular diffuse large B-cell lymphoma (PT-DLBCL) is a rare and aggressive lymphoma with molecular heterogeneity not well characterize. In this study, we performed next-generation sequencing analysis for a large number of DNA and RNA samples from patients with PT-DLBCL. DNA sequencing analysis identified ≥ 3 chromosomes with copy number variations (CNVs) and microsatellite instability as prognostic biomarkers, rather than MYD88 mutations and genetic subtypes. Remarkably, targeted RNA-seq analysis in 195 patients revealed that TP53 mutations with a ≥ 40% variant allele frequency had significantly adverse prognostic impact, and that a 150-gene expression signature subdivided PT-DLBCL into two distinct clusters, termed as testicular lymphoma tumor (TLT) and microenvironment (ME) subtypes. The TLT subtype featured upregulation of genes involved in B-cell receptor signaling, cell cycle, DNA damage and repair, higher frequencies of CNVs and MYD88 mutations, elder ages, larger tumor sizes, and significantly poorer survival. Genomic microRNA profiling analysis identified significantly differentially expressed microRNAs between 113 PT-DLBCL and 180 systemic DLBCL patients, and further subdivided the PT-DLBCL cohort by microRNA signatures. The subcohort with upregulation of 16 microRNAs associated with PT-DLBCL and testicular tissue expression had significantly better survival. This study revealed characteristic genetic, gene expression, and microRNA profiles and heterogeneity in PT-DLBCL.
Patients come from populations and populations contain patients. A two‐stage scientific and ethics review: The next adaptation for single institutional review boards
Alford, Eli, Tate, Kaitlin, Khachaturian, Ara S. , Knopman, David S. , Long, Mark D.

Alzheimer's & Dementia | July 11, 2017 | Volume: 13 | Issue: 8 | Pages: 940-946

10.1016/j.jalz.2017.06.001 Get It

AbstractIntroductionFor nearly 50 years, institutional review boards (IRB) and independent ethics committees have featured local oversight as a core function of research ethics reviews. However growing complexity in Alzheimer's clinical research suggests current approaches to research volunteer safety is hampering development of new therapeutics. As a partial response to this challenge, the NIH has mandated that all NIH‐funded multi‐site studies will use a single Institutional Review Board. The perspective describes a joint program to provide a single IRB of record (sIRB) for phases of multi‐site studies.MethodsThe approach follows two steps. One, an expert Scientific Review Committee (SRC) of senior researchers in the field will conduct the review principally of scientific merit, significance, feasibility, and the likelihood of meaningful results. The second step will be the IRB's regulatory and ethics review. The IRB will apply appropriate regulatory criteria for approval including minimization of risks to subjects and risks reasonable in relation to anticipated benefits, equitable subject selection, informed consent, protections for vulnerable populations, and application of local context considerations, among others.ResultsThere is a steady demand for scientific, ethical and regulatory review of planned Alzheimer's studies. As of January 15, 2017, there are nearly 400 open studies, Phase II and III, industry and NIH sponsored trials on disease indications affecting memory, movement and mood in the US.ConclusionsThe effort will initially accept protocols for studies of Alzheimer's disease, dementia, and related disorders effecting memory, movement and mood. Future aims will be to provide scientific review and, where applicable, regulatory and ethical review in an international context outside North America with sites possibly in Asia, Europe and Australia.
Serum microRNA expression patterns that predict early treatment failure in prostate cancer patients
Preus, Leah, Yan, Li , Long, Mark D. , Morrison, Carl D., Nesline, Mary , Johnson, Candace S. , Liu, Song , Trump, Donald L. , Sucheston‐Campbell, Lara E. , Campbell, Moray J. , Singh, Prashant Kumar , Hu, Qiang , Morrison, Carl D., Koochekpour, Shahriar , Kohli, Manish , Campbell, Moray J

Oncotarget | September 16, 2015 | Volume: 5 | Issue: 3 | Pages: 824-840

10.18632/oncotarget.1776 Get It