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7719 citation(s) found for "Ma, Daniel".

Temporal- and concentration-dependent effects of transforming growth factor-beta 1 (TGF-β1) in primary human knee fibroblasts
Dilger, Oliver B., Carstens, Mason F. , Garrett, Daphne J., Berry, Daniel J., Thaler, Roman, Dudakovic, Amel , Berry, Daniel J. , Carstens, Mason , Sanchez-Sotelo, Joaquin, Berry, Daniel J , Berry, Daniel J., Sánchez‐Sotelo, Joaquín , Morrey, Mark E. , Abdel, Matthew P.

Bone & Joint Research | June 16, 2025 | Volume: 14 | Issue: 6 | Pages: 527-538

10.1302/2046-3758.146.bjr-2024-0387.r3 | PMID 40518918 Get It

AimsTo characterize the effects of varying experimental parameters of transforming growth factor-beta 1 (TGF-β1) in primary knee fibroblasts as an in vitro model of arthrofibrosis.MethodsPrimary knee fibroblasts were isolated from one patient undergoing primary total knee arthroplasty (TKA) and one patient undergoing revision TKA for arthrofibrosis, respectively. Fibroblasts were stimulated with varying concentrations and durations of the pro-fibrotic cytokine TGF-β1. Picrosirius red staining (PSR) was conducted to assess collagen deposition, and real-time quantitative polymerase chain reaction (RT-qPCR) and western blotting were performed to determine cellular gene expression levels. A collagen gel contraction assay was used to assess TGF-β1-induced fibroblast contraction.ResultsIn our experiments, TGF-β1-mediated collagen deposition was consistent across a vast concentration range (0.5 to 40 ng/ml). While α-smooth muscle actin (ACTA2) protein levels and SMAD2 phosphorylation were induced by low concentrations (1 ng/ml), robust ACTA2 transcription required higher concentrations (5 ng/ml) of TGF-β1. Evaluation of TGF-β1-mediated cell and cytoskeletal contractility shows that in the measured fibroblasts, this process occurs within three hours following TGF-β1 administration. Of note, TGF-β1-differentiated myofibroblasts exhibited greater contractile properties than naïve fibroblasts in the presence of TGF-β1.ConclusionTaken together, this study elucidates key TGF-β1 experimental parameters that will inform the development and interpretation of in vitro models of arthrofibrosis.Cite this article: Bone Joint Res 2025;14(6):527–538.
471 | LONGITUDINAL scRNA‐seq CASE STUDY IDENTIFIES THREE STABLE AND DISTINCT B‐CELL SUBTYPES IN SERIAL SAMPLES OF A DIFFUSE B‐CELL LYMPHOMA FROM A SINGLE DOG
Treeful, Amy E. , Macchietto, Marissa , Reid, Kelly, Seelig, Davis , Demos-Davies, Kimberly , Büettner, Manuela , Pracht, Sara, Yung, C., Luethcke, R., Ditcovsky, R., Kuzmik, Alana R., Borgatti, A., Henson, Morgan , Feiock, Caitlin, Sarver, A. L., Walker, G., Winter, A., Buettner, M., Burt, L., Penza, V., Adams, R., Vallera, Daniel A. , Henson, M., Modiano, Jaime F. , Naik, S., Sarver, A. L.

Hematological Oncology | June 16, 2025 | Volume: 43 | Issue: S3 | Pages: No page available

10.1002/hon.70096_471 Get It

505 | EMERGING EVIDENCE OF MICROBIOTA COMPOSITION LINKED TO ADVERSE EVENTS DURING IMMUNOTHERAPY IN DOGS WITH LYMPHOMA
Treeful, Amy E. , Dietz, Michael, Reid, Kenneth , Büettner, Manuela , Chehadeh, Andrea, Pracht, Sara, Luethcke, R., Yung, C., Demos-Davies, Kimberly , Seelig, Davis , Feiock, Caitlin, Henson, Morgan , Borgatti, Antonella , Shruthi, N, Dietz, M., Reid, K., Buettner, M., Winter, A., Penza, V., Adams, R., Vallera, Daniel A. , Henson, M., Staley, Christopher , Modiano, Jaime F. , Shruthi, N.

Hematological Oncology | June 15, 2025 | Volume: 43 | Issue: S3 | Pages: No page available

10.1002/hon.70096_505 Get It

478 | SINGLE‐CELL RNA SEQUENCING UNCOVERS AP‐1 TRANSCRIPTIONAL UPREGULATION IN CANINE DIFFUSE LARGE B‐CELL LYMPHOMA
Sarver, Aaron L. , Treeful, Amy E. , Macchietto, Marissa , Reid, Kenneth , Seelig, Davis , Demos-Davies, Kimberly , Büettner, Manuela , Pracht, Sara, Yung, C., Luethcke, R., Borgatti, Antonella , Henson, Morgan , Feiock, Caitlin, Naik, Swati , Callaghan, C., Walker, G., Lloréns, J., Reid, K., Winter, A., Buettner, M., Burt, L., Penza, V., Adams, Ralf H. , Vallera, Daniel A. , Henson, M., Naik, S., Modiano, Jaime F.

Hematological Oncology | June 15, 2025 | Volume: 43 | Issue: S3 | Pages: No page available

10.1002/hon.70096_478 Get It

822 | A DOSE‐ESCALATION STUDY OF INTRAVENOUS VESICULAR STOMATITIS VIRUS TO TREAT COMPANION DOGS WITH SPONTANEOUS AGGRESSIVE LYMPHOMA (PHASE 1 OF THE ORBIT CLINICAL TRIAL)
Feiock, Caitlin, Reid, Kelly, Winter, Alexandra L. , Büettner, Manuela , Pracht, Sara, Luethcke, Kristofer Ross , Yung, Christianne, Demos-Davies, Kimberly , Seelig, Davis , Treeful, Amy E. , Henson, Morgan , Borgatti, A., Naik, Shobha, Buettner, M., Yung, C., Adams, R., Penza, V., Burt, L., Henson, M., Vallera, Daniel A. , Modiano, Jaime F. , Naik, S.

Hematological Oncology | June 15, 2025 | Volume: 43 | Issue: S3 | Pages: No page available

10.1002/hon.70096_822 Get It

893 | THE SAFETY AND FEASIBILITY OF INTRAVENOUS VESICULAR STOMATITIS VIRUS, AN IMMUNOGENIC ONCOLYTIC VIRUS, AS A TREATMENT FOR SPONTANEOUS AGGRESSIVE LYMPHOMA IN COMPANION DOGS
Reid, Kelly, Feiock, Caitlin, Büettner, Manuela , Pracht, Sara, Luethcke, Kristofer Ross , Seelig, Davis , Demos-Davies, Kimberly , Treeful, Amy E. , Henson, Morgan , Borgatti, A., Naik, Shobha, Winter, A., Buettner, M., Yung, C., Adams, R., Penza, V., Burt, L., Henson, M., Vallera, Daniel A. , Modiano, Jaime F. , Naik, S.

Hematological Oncology | June 15, 2025 | Volume: 43 | Issue: S3 | Pages: No page available

10.1002/hon.70096_893 Get It

EWSR1 Rearrangements in Basaloid Neoplasms With Adnexal Differentiation
Dehner, Carina , Agrawal, Shruti , Ameline, Baptiste , Gupta, Sounak , Halling, Kevin C. , Baumhoer, Daniel, Dehner, Carina A , Gupta, Sounak , Malik, Faizan Ahmad , Baumhoer, Daniel , Guo, Ruifeng

Genes, Chromosomes and Cancer | June 13, 2025 | Volume: 64 | Issue: 6 | Pages: No page available

10.1002/gcc.70057 | PMID 40511965 Get It

ABSTRACTVarious cutaneous adnexal neoplasms have been associated with gene fusions as the main driver of their histogenesis, most of which showed poroid or hidradenomatous differentiation or represented other tumors of sweat glands. Recently, we encountered two cases of primitive basaloid neoplasms of predominantly folliculogenic/pilosebaceous origin, both surprisingly harboring recurrent EWSR1 rearrangements. Both tumors presented in young patients of either sex (1 F; 17 years; 1 M; 37 years) and involved the dermis and subcutaneous tissue of the abdominal wall (case 1) and the buttock (case 2). Histologically, the tumors were composed of primitive, basaloid cells with areas of keratinization (case 1) or foci of sebaceous differentiation (case 2) and stained strongly with keratins, p40 (case 1) or p63 (case 2), while lacking significant CD99 expression in both cases. Case 1 harbored an EWSR1::FLI1 fusion while case 2 harbored an EWSR1::PBX3 fusion. Clinical follow‐up was available for case 2 and showed no evidence of disease at 15 months of follow‐up. Methylation profiling showed case 1 to cluster with cutaneous squamous cell carcinoma, while case 2 was independent but positioned close to salivary gland epithelial‐myoepithelial carcinoma. These findings expand on the histopathologic and molecular genetic features of basaloid tumors with apparent adnexal differentiation and raise awareness to carefully interpret and correlate molecular findings with morphology and immunophenotype to avoid misinterpretation as a mesenchymal neoplasm.
Integrative Genomic and Transcriptomic Analysis Reveals Targetable Vulnerabilities in Angioimmunoblastic T‐Cell Lymphoma
Zhang, Weiwei , Sharma, Sunandini , Shah, Roshani , Lone, Waseem , Mehmood, Syed Karman, Chawla, Ravneet Singh, Cappelli, Luca Vincenzo , Heavican‐Foral, Tayla B. , Cannatella, Jeffrey J. , Amador, Catalina, Arif, Aiza, Lim, Soon Thye , Ong, Choon Kiat , Du, Ming‐Qing , Perry, Anamarija M. , Greiner, Timothy C. , Fu, Kai , Trøen, Gunhild, Weinstock, David M. , Laginestra, Antonella, Kim, KyeongJin , Vose, Julie, Weisenburger, Dennis D., Davé, Sandeep S. , Khoury, Joseph D. , Chan, Wing C., Iqbal, Javeed , Bouska, Alyssa , Lone, Waseem G , Cappelli, Luca Vincenzo , Ong, Choon Kiat , Weinstock, David M , Iqbal, Javeed , Holte, Harald , Shah, Rauf A., Soma, Mahfuza Afroz , Yang, Ruimeng , Liu, Xuxiang , Chawla, Ravneet Singh, Fiore, Danilo , Gong, Qiang , Heavican, Tayla B., Smith, Lynette M. , Feldman, Andrew L. , Leval, Laurence de , Vodák, Daniel , Nakken, Sigve , Delabie, Jan , Pileri, Stefano , Pajvani, Utpal B. , Weisenburger, Dennis D. , Horwitz, Steven M. , Inghirami, Giorgio

American Journal of Hematology | June 13, 2025 | Volume: 100 | Issue: 9 | Pages: 1486-1501

10.1002/ajh.27736 | PMID 40510016 Get It

ABSTRACTNodal follicular helper T‐cell (T FH) lymphoma of the angioimmunoblastic (AITL) subtype has a dismal prognosis. Using whole‐exome sequencing (n = 124), transcriptomic (n = 78), and methylation (n = 40) analysis, we identified recurrent mutations in known epigenetic drivers (TET2, DNMT3A, IDH2 R172 ) and novel ones (TET3, KMT2D). TET2, IDH2 R172 , DNMT3A co‐mutated AITLs had poor prognosis (p < 0.0001). Genes regulating T‐cell receptor (TCR) signaling (CD28, PLCG1, VAV1, FYN) or activation (RHOA G17V ) or regulators of the PI3K‐pathway (PIK(3)C members, PTEN, PHLPP1, PHLPP2) were mutated. CD28 mutation/fusion was associated with poor prognosis (p = 0.02). WES of purified, neoplastic T‐cell (CD3+PD1+) demonstrated high concordance with whole tumor biopsies and validated the presence of TET2 and DNMT3A in tumor and non‐lymphoid cells, but other mutations (CD28, RHOA G17V , IDH2 R172 , PLCG1) in neoplastic cells. Integrated DNA‐methylation and mRNA expression analysis revealed epigenetic alterations in genes regulating TCR, cytokines, PI3K‐signaling, and apoptosis. RNA‐seq analysis identified fusion transcripts regulating TCR‐activation (8%), revealed a restricted TCR‐repertoire (α = 87%, β = 72%), and showed the presence of Epstein–Barr virus transcriptome (73%). GEP demonstrated the association of B‐cells or dendritic cells in the tumor milieu with prognosis (p < 0.01). RNA‐seq and WES analysis of 12 AITL‐patient‐derived‐xenografts (PDX) showed that bi‐allelic TET2 and DNMT3A mutations or sub‐clonal mutations (PLCG1, PHLPP2) propagated in sequential passages, and gene signatures related to T FH and T CM (central‐memory) were well‐maintained through passages. Gene expression signatures associated with late PDX passages (3rd–5th) were enriched with proliferation and metabolic reprogramming‐related genes and predicted prognosis in an independent AITL series. Low PHLPP2 mRNA expression predicted poor prognosis (p = 0.05) and engineered PHLPP2 or TET2 loss in CD4+ T‐cells showed enhanced PI(3)K activation, thus uncovering a therapeutic target for clinical trials.
Diagnostic Accuracy of Fine Needle Aspiration and Observational Outcomes in Warthin Tumors of the Parotid Gland
Baratz, Hannah , Ali, Hasnat , Staricha, Kelly L. , Tasche, Kendall K. , Abel, Kathryn M. Van , Moore, Eric J. , Baratz, Hannah Q , Ali, Hawa M , Yin, Linda X , Van Abel, Kathryn M , Yin, Linda X. , Price, Daniel L.

Annals of Otology, Rhinology & Laryngology | June 13, 2025 | Volume: 134 | Issue: 11 | Pages: 842-847

10.1177/00034894251348373 | PMID 40509670 Get It

Background: The role of fine-needle aspiration (FNA) in diagnosing parotid tumors remains debated due to varying accuracy. This study evaluates FNA’s accuracy in diagnosing Warthin’s tumor (WT) and its safety in guiding observational management. Study design: Retrospective cohort study. Setting: Single institution, Tertiary referral center. Methods: Data from 2010 to 2022 including demographics, cytology, pathology, and surgical outcomes were extracted. Accuracy was assessed using sensitivity, specificity, positive predictive value (PPV), and negative predictive value (NPV). Results: Among 808 patients with parotid tumors, 234 were WTs. Seventy-eight patients underwent surgery with pathology while 156 underwent observation. FNA sensitivity, specificity, PPV, and NPV for WTs were 98.2%, 98.1%, 91.8%, and 99.6% respectively. No observational patients developed clinical signs of malignancy, and the median change in tumor size was 0 cm (range −3.1 to 2.1). Conclusions: FNA is highly specific for WT but limited by nondiagnostic results. Observation is a safe approach with minimal risk of growth, malignancy, or infection.
Race and Outcomes to [177Lu]Lu-PSMA-617 in Advanced Prostate Cancer
Rami, Avina , Zhong, Caiwei , Muniz, Miguel, Khorasanchi, Adam , Fein, Daniel , Stoltenberg, Hailey, Gopalakrishan, Dharmesh, Yang, Yuanquan , Ng, Thomas S.C. , Gafita, Andrei , Jacene, Heather A. , Ravi, Praful , Muniz, Miguel , Khorasanchi, Adam , Fein, Daniel , Ng, Thomas S C , Childs, Daniel S , Xie, Wanling , Gallagher, John F. , Mohammadi, Sedra, Voter, Andrew F. , Childs, Daniel S.

Cancers | June 12, 2025 | Volume: 17 | Issue: 12 | Pages: 1960

10.3390/cancers17121960 | PMID 40563610 Get It

Black patients with metastatic prostate cancer have higher mortality rates compared to non-Hispanic White patients. There are no data on outcomes with [177Lu]Lu-PSMA-617 (LuPSMA) across racial groups. We evaluated the association between race and outcomes with LuPSMA in a multi-institutional cohort of consecutive patients with mCRPC treated with LuPSMA. The primary outcomes were PSA-50 rate, PSA-progression-free survival (PSA-PFS), and overall survival (OS). Statistical models were adjusted for age, number of prior therapies, sites of metastases, and baseline PSA. A total of 654 patients were included; 593 (91%) were White, 45 (7%) were Black and 16 (2%) were another non-Black minority (NBM). There were no statistically significant differences in PSA-50 rates, PSA-PFS and OS between the groups. Black and White patients treated with LuPSMA had similar clinical outcomes; efforts are needed to ensure Black and NBM patients have equal access to life prolonging therapies to narrow disparities in outcomes.