Citations

Mayo Clinic

Clear

613 citation(s) found for "Qi, Ying".

Latent effector capacity governs reversible T cell exhaustion: A theoretical mathematical model of PD-1 blockade response
Li, Ying , Dong, Haidong

Science Advances | October 16, 2026 | Volume: 12 | Issue: 42 | Pages: No page available

10.1126/sciadv.aei0840 | PMID 42886782 Get It

T cell exhaustion is often viewed as a terminal state marked by irreversible loss of function during chronic infection and cancer. However, the rapid recovery of antitumor activity in clinical responders after PD-1 blockade suggests that some exhausted T cells retain hidden functional potential. To explain this paradox, we present a theoretical framework that separates latent effector capacity from active effector function. Latent effector capacity represents a history-dependent state reflecting preserved epigenetic accessibility and regulatory readiness, distinct from ongoing gene expression. In this model, PD-1 signaling acts as a reversible mask that suppresses effector function without eliminating the underlying effector capacity. The framework explains preserved chromatin accessibility, rapid reinvigoration after checkpoint blockade, and variable therapeutic responses. By incorporating nonlinear maintenance and erosion of latent effector capacity, the model predicts a bistable system with a point of no return beyond which exhaustion becomes irreversible. These principles may guide development of mechanistically informed biomarkers and artificial intelligence models predicting response to PD-1 therapy.
Sex-specific cardiovascular responses in cerulein-induced acute pancreatitis models
Du, Aolin, Zhao, Jiahui, Huo, Yu Henry, Zhang, Junmeng, Fayyaz, Ahmed U , Wang, Bin , Wang, Jiale , Bi, Yan , Waldron, Richard T , Ji, Baoan , Wang, Ying

American Journal of Physiology-Heart and Circulatory Physiology | October 6, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1152/ajpheart.00065.2026 | PMID 42838027 Get It

Cardiovascular (CV) dysfunction is common in severe acute pancreatitis (AP) and contributes substantially to mortality. Although sex differences in CV diseases are well recognized, with males generally exhibiting higher risk and poorer outcomes, their influence on AP-associated CV responses remains poorly defined. Here, we examined sex-dependent alterations in vascular integrity and cardiac function using cerulein-induced mouse models of AP. Because obesity is associated with more severe forms of AP, cerulein was used to induce mild AP in lean wild-type C57BL/6J mice and a more severe phenotype in obese C57BL/6J mice. Across both models, pancreatic injury was comparable between sexes. A modest sex difference in vascular permeability was observed in the mild but not severe AP model. In mild AP, both males and females showed similar compensatory increases in cardiac systolic function; however, in severe AP, only female mice maintained this adaptive systolic augmentation. Circulating levels of free fatty acids, reflecting systemic tissue lipolysis, were lower in females. Impaired cardiac adaptation in males was accompanied by higher levels of seven different myocardial inflammatory cytokines, as well as elevated circulating levels of angiopoietin-2 (Angpt2). While Angpt2 levels correlated with the severity of cardiac dysfunction, Angpt2 neutralization did not improve, and indeed worsened cardiac function in males. Together, these findings delineate both sex-dependent and sex-independent CV responses in mild and severe AP and identify Angpt2 as a potential compensatory cardioprotective factor under obesity-associated severe AP.
Generative AI, foundation models and large language models in radiation therapy physics: Clinical applications, challenges, and future directions
Qi, X. Sharon, Wang, Yi, Yang, Xiaofeng, Ren, Lei , Liu, Wei, Benedict, Stanley , Xiao, Ying , Xing, Lei , Naqa, Issam M. El, Qi, X. Sharon , Qi, X. Sharon, Yang, Xiaofeng

Medical Physics | August 7, 2026 | Volume: 53 | Issue: 8 | Pages: No page available

10.1002/mp.70616 | PMID 42563397 Get It

Abstract Generative AI (Gen AI), Foundation Models (FMs), and Large Language Models (LLMs) are powerful emerging technologies that demonstrate exceptional capabilities in processing vast amounts of unstructured and structured data, including text, voice, images, video and other formats, and adapting to a wide range of specific tasks. Their immense potential to drive meaningful improvements in treatment outcomes is increasingly evident. The advent of these technologies has marked a transformative era in healthcare, including the fields of radiation oncology and medical physics. Specifically, these powerful technologies offer unprecedented opportunities to analyze domain‐specific data, process and synthesize medical images, automate routine tasks, support clinical decision‐making, optimize and streamline clinical workflows, and enhance the quality of clinical trials. While these emerging technologies present new opportunities to revolutionize radiation therapy practice, their implementation also raises important educational, ethical, and regulatory considerations. This scoping review highlights benefits, promises, risks, and challenges, such as interpretability, data privacy, regulatory compliance, reproducibility, hallucination, and integration into existing clinical workflow. Finally, emerging opportunities are outlined to guide future research directions. This review paper provides a timely overview of Gen AI, FMs and LLMs, aiming to inform medical physicists, clinicians, and researchers of the evolving role of these disruptive technologies in shaping the future of radiation therapy.
TRAIL splice variant TRAILshort disrupts T cell receptor signaling and promotes immune tolerance in vivo
Jalali, Shahrzad , Natesampillai, Sekar, Nie, Zilin , Zhang, Ying, Chandrasekar, Aswath P. , Hameister, Brianna M., Correia, Cristina, Mun, Dong-Gi, Garcia-Rivera, Enrique, Matson, Robert , Krogman, Ashton, Maynes, Mark A., Batchelor, Robin, Monie, Dileep D. , Behfar, Atta, Ansell, Stephen M. , Taner, Timucin, Weyand, Cornelia, Billadeau, Daniel D. , Garcia-Rivera, Enrique , Zhao, Tuantuan V, Garcia-Rivera, Enrique , Monie, Dileep D , Can, İsmail , Correia, Cristina , Zhao, Tuantuan V. , Mun, Dong‐Gi , Krogman, Ashton , Maynes, Mark A , Li, Hu , Behfar, Atta , Kenderian, Saad S. , Pandey, Akhilesh , Taner, Timuçin , Weyand, Cornelia M. , Badley, Andrew D.

Journal of Clinical Investigation | August 2, 2026 | Volume: 136 | Issue: 15 | Pages: No page available

10.1172/jci194449 | PMID 42544577 Get It

TRAIL is a TNF family ligand that trimerizes TRAIL-R1 (DR4) or TRAIL-R2 (DR5) to induce apoptosis, necroptosis, and/or NF-κB activation in receptor-bearing cells. We previously identified TRAILshort as a splice variant of TRAIL that lacks cysteine 230, cannot trimerize, and acts as a dominant-negative ligand that blocks TRAIL-mediated apoptosis. TRAILshort is expressed on cell surfaces and within extracellular vesicles, enabling it to confer TRAIL resistance to both producing and bystander cells. In this study, we showed that elevated TRAILshort levels were associated with chronic viral infections, cancer, and autoimmune diseases, suggesting a link to impaired immune regulation. Using unbiased phosphoproteomics and mechanistic studies, we demonstrated that TRAILshort binding to DR5 recruited and activated the phosphatase Src homology region 2 domain–containing phosphatase 1 (SHP-1), leading to zeta-chain-associated protein kinase 70 (ZAP-70) dephosphorylation, disruption of ZAP-70–CD3ζ interactions, and impaired T cell receptor signaling, thereby reducing T cell activation, proliferation, and cytokine production in response to antigen or CD3/CD28 ligation. Genetic or pharmacologic SHP-1 inhibition reverses these effects. In humanized mouse models, TRAILshort promoted the persistence of transformed mouse embryonic fibroblasts (MEFs) and L428 and antagonized CD19-directed CAR T cell activity, revealing TRAILshort as an immunomodulator of T cell function with therapeutic implications, including blocking TRAILshort to restore T cell immunity or delivering TRAILshort to enforce tolerance. TRAILshort, a variant of TRAIL, suppresses T cell function and immune responses in cancer and infectious diseases, highlighting its potential as a therapeutic target.
CD8+ T-cell effector programming is epigenetically regulated by DUSP2 through BAF complex–driven chromatin remodeling
Dellacecca, Emilia R. , Hirdler, Jacob B. , Barham, Whitney, Li, Ying, Gicobi, Joanina K. , Yan, Yiyi , Dong, Haidong , Li, Ying , Dong, Haidong , Li, Ying , Barham, Whitney

The Journal of Immunology | July 29, 2026 | Volume: 215 | Issue: 7 | Pages: No page available

10.1093/jimmun/vkag202 | PMID 42522262 Get It

Abstract Effector gene expression in CD8+ T cells is tightly controlled at the epigenetic and transcriptional levels; however, crucial regulatory signals remain incompletely understood. In this study, we identify dual specificity phosphatase 2 (DUSP2) as a key epigenetic modulator of effector CD8+ T-cell state, by elucidating inhibition of BAF-mediated chromatin opening by DUSP2. Induced downregulation of DUSP2 in human CD8+ T cells enhances cytotoxicity and effector phenotypes by increasing chromatin accessibility through upregulation of BAF subunits, such as SMARCA4, and permitting binding of ETS1 to BAF subunit gene loci and those essential for effector programs. These findings uncover a previously unrecognized role of DUSP2 in the management of the chromatin landscape in effector CD8+ T cells and the epigenetic fine-tuning of their functionality, highlighting DUSP2 as a promising therapeutic target for T cell–based immunotherapy.
Inflammatory arthritis irAE may represent a unique autoimmune disease primarily driven by T cells, but likely not autoantibodies 2251377
Yu, Yue, Chen, Shiju, Langenfeld, Hannah, Li, Yanfeng, Wang, Panwen , Li, Ying, Markovic, Svetomir, Davis, John, Crowson, C. S., Thanarajasingam, Uma , Zeng, Hu, Zhu, Xingxing , Langenfeld, Hannah E., Markovic, Svetomir, Davis, John M. , Dong, Haidong , Zeng, Hu

The Journal of Immunology | July 28, 2026 | Volume: 215 | Issue: Supplement_1 | Pages: No page available

10.1093/jimmun/vkag141.111 Get It

Abstract Introduction The underlying immunopathogenesis of inflammatory arthritis (IA) immune-related adverse event (irAE) remains obscure. Unlike rheumatoid arthritis (RA), where autoantibodies and B cell dysfunction are central features, the contribution of humoral immunity to IA-irAE is unclear. Methods Here, we performed immunophenotyping of peripheral blood from IA-irAE patients, and compared them with seronegative RA patients, ICI-treated patients without irAE, and healthy controls. Results IA-irAE was marked with increased cytotoxic gene expression and metabolic activation in T cells, and reduced CXCR3 and CCR6 expression in CD4+ T cells. Contrary to seronegative RA, IA-irAE patients displayed no significant elevation in autoantibody levels or atypical CD11c+CD21⁻ B cells. IA-irAE was further characterized by elevated levels of IL-6, IL-12, and type I IFN, which correlated with the T cell activation phenotypes. Conclusion Altogether, our findings define IA-irAE as a disease with certain immunological features distinctive from RA, representing a potentially T cell driven, autoantibody-independent autoimmunity. These results offer insights into immune tolerance breakdown and therapeutic targeting in irAEs. Funding Source National Institute of Arthritis and Musculoskeletal and Skin Diseases Mark E. and Mary A. Davis Initiative in Rheumatoid Arthritis Research Mayo Foundation for Medical Education and Research Topic Categories Basic Autoimmunity (BA)
Abstract Fri137: Angiopoietin-2 partially mediates sex-dependent cardiovascular responses in cerulein-induced acute pancreatitis models
赵佳辉, Du, Aolin, Huo, Yu, Zhang, Junmeng, Zhao, Debiao , Fayyaz, Ahmed, Wang, Bin, Wang, Jiale, Bi, Yan, Sangaralingham, Jeson, Lugea, Aurelia, Waldron, Richard, Pandol, Stephen, Redfield, Margaret, Ji, Baoan , Wang, Ying, Waldron, Richard T. , Waldron, Richard T , Huo, Yu, Bi, Yan, Sangaralingham, Jeson, Pandol, Stephen J , Redfield, Margaret M. , Wang, Ying

Arteriosclerosis, Thrombosis, and Vascular Biology | July 28, 2026 | Volume: 46 | Issue: Suppl_1 | Pages: No page available

10.1161/atvb.46.suppl_1.fri137 Get It

Background: Alterations in cardiovascular function are key features of severe acute pancreatitis (AP) and contribute substantially to mortality. Although sex differences in cardiovascular diseases are well recognized, with males generally exhibiting higher risk and poorer outcomes, their influence on AP-associated cardiovascular responses remains poorly defined. Therefore, we hypothesized that cerulein-induced AP causes severity-dependent and sex-specific changes in vascular integrity and cardiac function. Methods: Obesity has been associated with more severe forms of AP. Thus, mild and severe AP were induced by cerulein injections (100µg/kg/h×12) in lean (n=10 males, n=13 females) and obese (n=9 males, n=12 females) C57BL/6J mice, respectively. Vascular permeability was assessed by FITC-dextran extravasation. Cardiac function was assessed by echocardiography before and after cerulein injection. Cytokines were measured with multi-plex cytokine array and the role of angiopoietin-2 (Angpt2), an endothelial-derived regulator of vascular and cardiac responses, was evaluated using a neutralizing antibody. Results: Vascular permeability did not differ significantly between sexes in either AP model. In mild AP, males and females showed comparable increases in systolic function; however, in severe AP, only female mice maintained this adaptive systolic augmentation, assessed by fractional shortening (FS; 25.78±0.27% at baseline vs. 43.44±0.57% at endpoint, n=12, p<0.0001). This impaired cardiac adaptation in males was accompanied by increased myocardial inflammatory cytokines and elevated circulating free fatty acids. Among ten circulating cytokines measured, Angpt2 levels were significantly higher in males than females (male: 63.50±1.52ng/mL, n=9 vs. female: 41.37±2.68ng/mL, n=6, p=0.013) and were negatively correlated with systolic performance (FS; R 2 =0.75, p<0.0001), while positively associated with preload (end-diastolic volume; R 2 =0.55, p=0.0015). Unexpectedly, Angpt2 neutralization did not improve the cardiac adaptations in males and instead worsened cardiac performance as reflected by reduced FS (control IgG: 32.83±1.47%, n=4 vs. Anti-Angpt2: 22.88±0.64%, n=5, p=0.013) in severe AP. Conclusions: AP elicits both sex-dependent and sex-independent cardiovascular responses, with female mice exhibiting preserved cardiac adaptation, and Angpt2 is a potential compensatory mediator of cardiac protection in severe AP.
Abstract Fri086: CD38 NADase Suppresses Sulfite Oxidase (SUOX) and Activates Reverse Complex V to Promote Metabolic Remodeling in Endothelial Cells (ECs) Under Disturbed Flow
Ko, Kyung Ae , Samanthapudi, Venkata Subrahman K, Hoang, Oanh, Mejia, Gilbert F. , Rivera, Luis Antonio, KIM, JUNG HYUN, Ostos-Mendoza, Kelia, Deswal, Anita, Pathania, Rajneesh , Morrell, Craig, Chini, Eduardo N. , Martin, James, Hamilton, Dale, Seeley, Erin, Burks, Jared, Brookes, Paul, LE, NHAT TU, Abe, Junichi, Kotla, Sivareddy , Lee, Jonghae , Chen, Weiqing , Hoang, O.N. , Zhang, Aijun , Imanishi, Masaki , Mendoza, Keila Carolina Ostos , Morrell, Craig , Shen, Ying , Hamilton, Dale J. , Burks, Jared K , Wang, Guangyu

Arteriosclerosis, Thrombosis, and Vascular Biology | July 28, 2026 | Volume: 46 | Issue: Suppl_1 | Pages: No page available

10.1161/atvb.46.suppl_1.fri086 Get It

Introduction: Atherosclerotic lesions preferentially form in arterial regions exposed to disturbed flow (DF), where ECs exhibit mitochondrial (mt) dysfunction, metabolic reprogramming, and senescence. Hippo pathway kinases LATS1/2 maintain EC homeostasis, but how DF–mediated LATS1/2 suppression drives EC metabolic remodeling remains unclear. Hypothesis: We propose that DF activates CD38, leading to mt dysfunction and metabolic reprogramming that promotes EC senescence and aberrant proliferation by LATS1/2 inhibition. Methods: EC-specific Lats1/2 knockout mice were generated using tamoxifen-inducible Cre systems, and DF was induced by partial carotid ligation. Murine and human plaques were analyzed using COMET™ immunofluorescence, and spatial metabolomics. Bioenergetic profiling included Seahorse XF analysis, 13 C-glucose/ 13 C-glutamine tracing, and pharmacologic modulation of CD38, mtROS, and ATP synthase. Results: Complete Lats1/2 deletion caused fatal edema and vascular leakage, while partial loss produced fragile, highly neovascularized plaques. Spatial proteomics revealed a CD38-driven senescence-associated stemness (SAS) phenotype under LATS1/2 deficiency. Metabolomics showed sulfite and taurine accumulation, consistent with SUOX deficiency. Mechanistically, CD38 suppressed SUOX, induced Complex V reverse-mode , increased succinate flux, and accelerated ATP consumption. Despite ATP depletion, glutamate metabolism and TCA cycle flux were enhanced, sustaining EC proliferation under energetic stress. LATS1/2 knockdown reduced mt respiratory capacity (lower OCR peak) without significantly increasing glycolysis, and DF suppressed both OCR and ECAR, indicating impaired energy metabolism under pathological shear stress. CD38 inhibition restored mt respiration and glycolytic capacity by preserving NAD, and rescuing LATS1/2 and DF-mediated defects. Blocking reverse-mode Complex V reduced DF- and LATS1/2-dependent EC senescence and proliferation. Conclusion: Complete LATS1/2 deletion causes fatal vascular leakage, while partial loss drives plaque formation with fragile neovessels through a CD38-dependent SAS phenotype. CD38 suppresses SUOX, induces Complex V reverse-mode , increases succinate flux, and accelerates ATP consumption, enabling EC proliferation despite energy stress. DF and LATS1/2 loss impair mt and glycolytic function, whereas CD38 inhibition restores mt respiration and reduces EC senescence and proliferation to prevent atherothrombosis in DF regions.
Integrative AI-Enabled Virtual Cell Modeling Reveals a Clinically Relevant Latent Effector State of Human CD8⁺ T Cells Undetectable by Conventional Analyses
Li, Ying, Zhu, Mojun , Dronca, Roxana , Yan, Yiyi , Zhang, Wenjing, Lin, Yi, Mansfield, Aaron S. , Liew, Aubrey Y., Dong, Haidong , Mansfield, Aaron S , Dong, Haidong , Li, Ying, Markovic, Svetomir N. , Park, Sean S.

No container title available | July 27, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.07.22.739582 Get It

Abstract Understanding how immune checkpoint inhibitors (ICIs) reshape human T-cell responses requires models that move beyond static transcriptomic snapshots and discrete cell-state classifications. Here, we present an integrative AI-enabled virtual cell framework that represents human CD8⁺ T-cell responses as dynamic and computable systems during ICI therapy. By integrating single-cell RNA sequencing with paired T-cell receptor sequencing within the C2S-scale foundation model, we construct a virtual representation of individual T cells, in which each cell is encoded by a unique functional identity that captures its transcriptional, signaling, and clonal characteristics. Using this framework, we identify a previously unrecognized dynamic latent effector state of CD8⁺ T cells characterized by intermediate expression of effector genes, distinct signaling activity, and ongoing clonal expansion. Across independent patient cohorts, the virtual cell model consistently indicates that ICI therapy mainly acts by unmasking pre-existing effector potential rather than inducing de novo effector differentiation. Notably, this latent effector population remains transcriptionally restrained despite active signaling and clonal expansion, revealing a hidden reservoir of antitumor immune capacity. More broadly, our study demonstrates how AI-enabled virtual cell modeling can reconstruct latent cellular states and their dynamic transitions from multidimensional single-cell data. By incorporating functional identity into virtual cell model, this framework uncovers biologically meaningful yet non-obvious T-cell effector program during cancer immunotherapy and provides a generalizable approach for studying immune dynamics in human disease.
Primary Aldosteronism Medical Treatment Outcomes (PAMO) Beyond 12 Months
Yang, Jun , Goi, Jessica , Burrello, Jacopo , Reincke, Martín , Adolf, Christian, Brüdgam, Denise , Li, Qifu , Song, Ying , Hu, Jinbo , Yang, Shumin , Satoh, Fumitoshi , Ono, Yoshikiyo , Libianto, Renata , Nayak, Drishya , Vaidya, Anand , O’Toole, Samuel , Larose, Stéphanie , Nakai, Kazuki , Nishikawa, Tetsuo , Ladygina, D. O. , Fardella, Carlos , Mulatero, Paolo , Drake, William M., Varsani, Chetna, Wu, Xilin , Stowasser, Michael , Li, Nanfang , Zhu, Qing , Hong, Namki , Nayak, Drishya , Puar, Troy H , Wu, Vin-Cent , Vaidya, Anand , Araujo-Castro, Marta , Kocjan, Tomaz , O'Toole, Samuel Matthew , Hundemer, Gregory L , Ragnarsson, Oskar , Lacroix, Andre , Larose, Stephanie , Nakai, Kazuki , Nishikawa, Tetsuo , Ladygina, Daria , Turcu, Adina F , Fardella, Carlos E , Uslar, Thomas , Quinkler, Marcus , Mulatero, Paolo , Pintus, Giovanni , Rossi, Gian Paolo , Hahner, Stefanie , Amar, Laurence , Brown, Morris Jonathan , Wu, Xilin , Young, W F , Williams, Tracy Ann , Fuller, Peter J , Yang, Jun , Stowasser, Michael , Hong, Namki , Wu, Vin‐Cent , Araujo‐Castro, Marta , Kocjan, Tomaž , Lacroix, André , Turcu, Adina F. , Vibhatavata, Peeradon , Quinkler, Marcus , Rossi, Gian Paolo , Hahner, Stefanie , Drake, William, Young, William F. , Williams, Tracy Ann

Hypertension | July 22, 2026 | Volume: 83 | Issue: 9 | Pages: No page available

10.1161/hypertensionaha.126.27431 | PMID 42483794 Get It

BACKGROUND: Primary aldosteronism (PA) is a common and treatable cause of hypertension, yet data on the durability of medical treatment response beyond the first year are limited. Using the PA medical treatment outcomes framework, we evaluated long-term biochemical and clinical outcomes and factors associated with treatment response. METHODS: We conducted an international, multicenter, observational cohort study across 27 centers on 4 continents. Adults with PA treated with mineralocorticoid receptor antagonists and/or epithelial sodium channel blockers between 2016 and 2021 were included if follow-up data were available at ≥12 months. Biochemical and clinical responses were classified as complete, partial, or absent using PA medical treatment outcomes criteria. Ordinal logistic regression identified determinants of a favorable treatment response. RESULTS: The cohort included 1292 patients (47.5% women, mean age 52 years) with a median follow-up of 34 months (interquartile range, 21–51). At ≥12 months, 58.3% achieved a complete biochemical response, and 20.8% achieved a complete clinical response, with only 5% showing no response. Determinants of a favorable biochemical response included lower aldosterone and lateralization index, and higher renin and potassium levels at baseline. In those taking spironolactone, a higher daily dose was also associated with a favorable biochemical response. Determinants of a favorable clinical response included female sex, lower body mass index, shorter duration of hypertension, and absence of hypertension-mediated organ damage. CONCLUSIONS: Targeted medical therapy for PA can deliver sustained biochemical and clinical benefits. Early disease detection and adequate dose titration are highly actionable determinants of long-term treatment success.