Gullbo, Joachim

Background and Significance Dysregulation of alternative splicing, caused by abnormal expression or mutation of splicing factors, has been identified as an important contributor to the genesis and progression of cancer, and suggested as a novel target for anticancer treatment. CDC2-like kinases (CLK) represent a family of dual-specificity tyrosine and serine-threonine kinases that are involved in the regulation of splicing by phosphorylation of serine/arginine-rich splicing factors (SRSFs) which play a central role in exon recognition. CTX-712 is an orally available, potent, selective, and a first-in-class pan-CLK inhibitor (CLK 1-4), that inhibits phosphorylation of SRSFs resulting in significant antitumor activity in vitro and multiple xenograft models in vivo. CTX-712 formulated in capsules is currently being evaluated in an ongoing first-in-man study in Japan, evaluating tolerability and early efficacy in patients with solid tumors or hematologic malignancies (JapicCTI-184188). Preliminary data from the Japanese study were presented during ASCO 2022 and ASH 2022, and showed an acceptable safety profile (doses up to 175 mg (MTD 140 mg) twice a week in 28-day cycles, observed DLTs included dehydration, decreased platelets, hypokalemia, and pneumonia) with early signs of clinical antitumor activity (2 partial responses / 26 treated solid tumor patients, 5 complete remissions and complete remission with incomplete hematologic recovery/ 8 treated patients with AML or MDS), warranting further clinical investigations.. (J Clin Oncol (2022) 40(16_suppl):3080. Blood (2022) 140(Supplement 1):6211-2.). This abstract details a second study with CTX-712 that has just been initiated. Study Design and Methods A new film-coated tablet formulation will be evaluated in this phase 1/2 multicenter, open-label study of CTX-712 in patients with (mutated or wild type spliceosomes genes) relapsed/refractory AML, higher risk MDS (IPSS-R intermediate, high, or very high), or high marrow blast (≥5 %) MDS/MPN (including CMML). The phase 1 part of the study will be conducted at 4 US sites, and all sites are currently open for enrolment. The study allows patients with performance status 0, 1, or 2, adequate organ function, and up to four prior lines of therapy. Due to potential risk of interactions (in vitro studies suggest CYP3A4 as main metabolic pathway for CTX-712), concomitant use of strong CYP3A4 inhibitors is prohibited. Use of azole antifungals that are not strong CYP3A4 inhibitors (e.g., isavuconazole) is permitted. The phase 1 part of the study consists of dose-escalation (sequential standard 3 + 3 design), where cohorts of 3 (or 6) patients will receive ascending doses of CTX-712 once weekly in a 28-day cycle with continuous monitoring of emerging clinical PK, PD, safety, and efficacy data, to determine the recommended phase 2 dose (RP2D) based on the suggestion by the Safety Review Committee (SRC). The protocol defines five different dose levels (20-140 mg, once weekly) but also authorizes the SRC to suggest up to two interim dose levels or alternate schedules (e.g., dosing two times a week) if supported by emerging data. The suggested RP2D will be used in a confirmatory phase 1 expansion cohort where an additional 10 patients (total n = 16; 8 patients with AML and 8 patients with MDS) will be treated to gain further confidence in the selected dose level. The phase 2 part of the study will commence after the RP2D has been identified and confirmed and aims at evaluating therapeutic activity in R/R AML (Cohort 2a) or R/R HR-MDS (Cohort 2b), in addition to confirmation of the safety profile. Clinical trial registry number: NCT05732103

Abstract Background: Aberrant B-cell receptor (BCR) and MYD88 signaling cooperatively drive Waldenstrom macroglobulinemia (WM) tumor cell survival. To sustain BCR-driven growth and maintain optimal cellular homeostasis, WM cells upregulate proteasome function. We have recently described the role of two distinct 19S proteasome-associated deubiquitinating enzymes (DUBs), USP14 and UCHL5, in maintaining WM-cell viability. Pharmacologic inhibition with b-AP15 (commercial compound) results in WM-cell death and accumulation of high molecular weight ubiquitinated protein conjugates; an event that is phenocopied by siRNA knockdown of USP14 and UCHL5. VLX1570 is a lead-optimized clinical grade analog of b-AP15 with enhanced solubility, stability and target residence time. We investigated the effect of VLX1570 on BCR components, WM cell survival proteins and its in vivo activity in a human xenograft model of WM. Materials: VLX1570 was obtained from Vivolux AB and bortezomib from Sellekchem. Human WM cell lines (BCWM.1, MWCL-1 and RPCI-WM1) and their drug-resistant derivatives were used (total n=12). Bone marrow aspirates from WM-patients and from healthy donors were obtained from the Mayo Clinic biospecimens core. PBMCs from healthy donors were used as comparators where needed. NOD/SCID mice were obtained from Taconic Labs and used for profiling the in vivo properties of VLX1570. Results: We first examined for USP14/UCHL5 protein expression by immunohistochemical analysis in primary tumor tissue from WM patients and compared it to healthy donor cells. WM patient-derived cells exhibited greater staining intensity of both DUBs. Preferential binding of VLX1570 to USP14 and UCHL5 in WM cells was probed in a WM cell using an enzyme-based competition assay (HA-Ub-Vs), which demonstrated time-dependent decrease in labeled USP14 and UCHL5 after treatment with VLX1570. In drug-resistant (bortezomib or ibrutinib-resistant) WM cells, VLX1570 induced >50% tumor-specific apoptosis and displayed synergistic activity with ibrutinib (median CI: 0.5). In addition to ER stress markers, we had previously observed that gene expression of BCR-signalosome components were reduced in VLX1570-treated WM cells (NanoString platform) and this was substantiated at the protein level where p-SYK, SYK and BTK decreased in a time-dependent manner. BCR end-effectors were probed in response to VLX1570 and a decrease in nuclear translocation of NFkB (p65) was noted. USP14 has been shown to control the availability of the chemokine receptor CXCR4, which regulates homing of WM cells to bone marrow. After VLX1570 treatment, we noted a significant decrease in CXCR4 surface receptor expression in all WM cell lines tested and primary WM cells. Lastly, to determine the in vivo anti-WM effects of VLX1570, we injected NOD/SCID mice (xenotransplanted with RPCI-WM1-Luc cells) with VLX1570 (I.P. route, 4.4mg/kg every other day) and measured tumor burden along with pharmacodynamic indicators. VLX1570-treated mice (n=7) demonstrated significantly lower tumor volumes by caliper measurement and bioluminescent signal (p=0.01 - 0.003) as well as reduced serum human-IgM, compared to vehicle-treated mice (n=7). Importantly, mice treated with VLX1570 survived longer vs. vehicle-treated mice (median survival, 62 vs. 44 days, respectively, p=0.0008). No unforeseen toxicities were noted and weight of the mice in vehicle vs. VLX1570-treated mice did not significantly change. IHC analysis in mice tumor tissues demonstrated reduced CXCR4, human-IgM, Ki67 and increased cleaved caspase-3 and ubiquitinated (k48-linked) protein level, the latter serving as a more specific indicator of USP14/UCHL5 inhibition. Conclusions: We provide substantial in vitro and in vivo evidence on the anti-WM effects of a novel first-in-class clinical grade USP14/UCHL5 inhibitor, VLX1570. In addition to anticipated induction of ER stress machinery, we describe for the first time VLX1570-mediated modulation of BCR components and WM cell survival proteins as well as demonstrate its robust activity in an aggressive human xenograft model of WM. These data provide the rationale for a clinical trial of single agent VLX1570 in patients with symptomatic WM. Disclosures Martin: Janssen: Consultancy, Honoraria; Acerta: Consultancy; Gilead: Consultancy; Celgene: Consultancy; Novartis: Consultancy; Bayer: Consultancy. Gullbo:Vivolux AB: Other: Shareholder. Linder:Vivolux AB: Other: Shareholder.

Abstract Background: The clinical impact of ibrutinib is irrefutable and has been hailed as a revolutionary treatment for several cancers, including mantle cell lymphoma (MCL). Despite high response rates noted with ibrutinib therapy in MCL (ORR, 68%), complete responses are low and durability of remission is suboptimal in MCL vs. CLL or Waldenstrom macroglobulinemia (WM) patients (Cheah et al Ann Oncol 2015). This relative lack of efficacy may be due to MCL cells having a higher proliferation rate and being less indolent in nature than CLL or WM cells. Tumor cells with a high proliferation index rely on optimally functioning protein metabolism/homeostasis systems. In MCL, this observation has been fortuitously exploited with the use of bortezomib, a 20S proteasome inhibitor. Indeed the ubiquitin proteasome system is a validated target and consists of several individual components whose function in MCL has yet to be mapped out. We have recently reported that inhibition of the 19S proteasomal deubiquitinating enzymes (DUBs), USP14 and UCHL5; with the small molecule inhibitor b-AP15 is lethal to drug-resistant WM tumor cells. This intriguing observation, prompted us to define the role of USP14/UCHL5 and their inhibition in a diverse panel of B-cell lymphoma cell lines, including MCL models as well as ibrutinib-resistant MCL cells. Materials: b-AP15 (and its clinical grade analog, VLX1570) was obtained from Vivolux AB and bortezomib from Sellekchem. Human NHL (DLBCL, MCL, Burkitt), Hodgkin lymphoma (HL), multiple myeloma (MM) cell lines as well as established drug-resistant subclones were used in drug-sensitivity screening experiments (total n=25). Results: USP14 and UCHL5 mRNA expression was queried in the CCLE database (Broad-Novartis) and showed highest expression in plasma cell and B-lymphoid tumor cell types. This was also observed at the protein level, wherein analysis of The Human Protein Atlas database revealed moderate to high intensity staining for USP14 and UCHL5 localizing to the cytoplasmic/membranous and nuclear compartments in high-grade NHL tissues. Next, we examined B-lymphoid tumor cell sensitivity to pharmacologic inhibition of USP14/UCHL5 with either b-AP15 or VLX1570 (72hr fluorescein diacetate hydrolysis assay or CellTiter Glo). We observed that MCL cells, including those resistant to ibrutinib (Jeko/IR cell line) were highly sensitive to VLX1570 (median IC50 12 - 25nM). In contrast, MM cells were not as sensitive (IC50's ranging between 58 - 90nM). Nine DLBCL cell lines exposed to equivalent time/concentrations of b-AP15 showed a median IC50 of 311nM (range, 70 - 910nM) and 3 HL models exhibited an IC50 of 531nM (range, 420 - 783nM). No difference in sensitivity to VLX1570 was noted between ABC-type vs. GCB-type DLBCL models. These functional results aligned with prior genomic inquiry where USP14 and UCHL5 gene expression was noted to be higher in MCL cell lines compared to DLBCL and non-hematologic cancer models analyzed (FDR=0.0019, p=0.001), suggesting their more central role in maintaining MCL tumor viability. Indeed MCL tumor survival (particularly ibrutinib-resistant cells) appears linked to USP14/UCHL5 function as treatment of Jeko/IR cells with VLX1570 (250nM, 12hrs) caused marked apoptosis (71.8% annexin-V+ staining) and cleavage of PARP-1. Moreover, the combination of ibrutinib and VLX1570 synergistically induced MCL cell death (median CI: 0.3). Mechanistic studies demonstrated that VLX1570 modulates several proteins critical for MCL survival including cyclin-D1, Myc and CXCR4/CD184. Reduction in cyclin-D1 was also noted to coincide with cell cycle arrest of VLX1570-treated MCL cells. Altogether, these findings suggest that VLX1570 modulates critical cellular signaling pathways utilized by MCL tumor cells, particularly those that are involved in resistance to ibrutinib. Conclusions: MCL remains a challenging malignancy to treat with no effective treatments for ibrutinib-relapsed disease. Our data supports the role of the proteasome-associated DUBs, USP14 and UCHL5, as critical factors involved in ibrutinib-resistant MCL tumor survival. VLX1570 is a potentially effective agent for the treatment of ibrutinib-resistant MCL. Disclosures Gullbo: Vivolux AB: Other: Shareholder. Linder:Vivolux AB: Other: Shareholder.

The ubiquitin–proteasome system (UPS) is increasingly recognized as a therapeutic target for the development of anticancer therapies. The success of the 20S proteasome core particle (20S CP) inhibitor bortezomib in the clinical management of multiple myeloma has raised the possibility of identifying other UPS components for therapeutic intervention. We previously identified the small molecule b‐AP15 as an inhibitor of 19S proteasome deubiquitinase (DUB) activity. Building upon our previous data, we performed a structure–activity relationship (SAR) study on b‐AP15 and identified VLX1570 as an analog with promising properties, including enhanced potency and improved solubility in aqueous solution. In silico modeling was consistent with interaction of VLX1570 with key cysteine residues located at the active sites of the proteasome DUBs USP14 and UCHL5. VLX1570 was found to inhibit proteasome deubiquitinase activity in vitro in a manner consistent with competitive inhibition. Furthermore, using active‐site‐directed probes, VLX1570 also inhibited proteasome DUB activity in exposed cells. Importantly, VLX1570 did not show inhibitory activity on a panel of recombinant non‐proteasome DUBs, on recombinant kinases, or on caspase‐3 activity, suggesting that VLX1570 is not an overtly reactive general enzyme inhibitor. Taken together, our data shows the chemical and biological properties of VLX1570 as an optimized proteasome DUB inhibitor.