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Miller, Matthew J.

https://orcid.org/0000-0003-1329-088X

Mayo Clinic

University of Iowa

Citations 4

Human myofiber‐enriched aging‐induced lncRNA FRAIL1 promotes loss of skeletal muscle function
Miller, Matthew J. , Gries, Kevin J. , Marcotte, George R. , Ryan, Zachary, Strub, Matthew D. , Arendt, Bonnie K., Dasari, Surendra , Adams, Christopher M. , Lanza, Ian R , Adams, Christopher M , Kunz, Hawley , Ebert, Scott M. , Lanza, Ian R.

Aging Cell | February 1, 2024 | Volume: 23 | Issue: 4 | Pages: No page available

10.1111/acel.14097 Get It

Abstract The loss of skeletal muscle mass during aging is a significant health concern linked to adverse outcomes in older individuals. Understanding the molecular basis of age‐related muscle loss is crucial for developing strategies to combat this debilitating condition. Long noncoding RNAs (lncRNAs) are a largely uncharacterized class of biomolecules that have been implicated in cellular homeostasis and dysfunction across a many tissues and cell types. To identify lncRNAs that might contribute to skeletal muscle aging, we screened for lncRNAs whose expression was altered in vastus lateralis muscle from older compared to young adults. We identified FRAIL1 as an aging‐induced lncRNA with high abundance in human skeletal muscle. In healthy young and older adults, skeletal muscle FRAIL1 was increased with age in conjunction with lower muscle function. Forced expression of FRAIL1 in mouse tibialis anterior muscle elicits a dose‐dependent reduction in skeletal muscle fiber size that is independent of changes in muscle fiber type. Furthermore, this reduction in muscle size is dependent on an intact region of FRAIL1 that is highly conserved across non‐human primates. Unbiased transcriptional and proteomic profiling of the effects of FRAIL1 expression in mouse skeletal muscle revealed widespread changes in mRNA and protein abundance that recapitulate age‐related changes in pathways and processes that are known to be altered in aging skeletal muscle. Taken together, these findings shed light on the intricate molecular mechanisms underlying skeletal muscle aging and implicate FRAIL1 in age‐related skeletal muscle phenotypes.
GADD45A is a mediator of mitochondrial loss, atrophy, and weakness in skeletal muscle
Marcotte, George R. , Miller, Matthew J. , Ryan, Zachary C. , Strub, Matthew D. , Vanderboom, Patrick M. , Heppelmann, Carrie J. , Chau, Sarah, Ruff, Zachary D. Von, Kilroe, Sean P. , McKeen, Andrew T., Dierdorff, Jason M., Stern, Jennifer I. , Nath, Karl A. , Ebert, Scott M. , Adams, Christopher M. , Ebert, Scott M. , Adams, Christopher M , Kunz, Hawley , Chau, Sarah, Grueter, Chad Eric , Lira, Vitor Agnew , Judge, Andrew R. , Rasmussen, Blake B. , Nair, K. Sreekumaran , Lanza, Ian R.

JCI Insight | October 10, 2023 | Volume: 8 | Issue: 22 | Pages: No page available

10.1172/jci.insight.171772 Get It

Aging and many illnesses and injuries impair skeletal muscle mass and function, but the molecular mechanisms are not well understood. To better understand the mechanisms, we generated and studied transgenic mice with skeletal muscle–specific expression of growth arrest and DNA damage inducible α (GADD45A), a signaling protein whose expression in skeletal muscle rises during aging and a wide range of illnesses and injuries. We found that GADD45A induced several cellular changes that are characteristic of skeletal muscle atrophy, including a reduction in skeletal muscle mitochondria and oxidative capacity, selective atrophy of glycolytic muscle fibers, and paradoxical expression of oxidative myosin heavy chains despite mitochondrial loss. These cellular changes were at least partly mediated by MAP kinase kinase kinase 4, a protein kinase that is directly activated by GADD45A. By inducing these changes, GADD45A decreased the mass of muscles that are enriched in glycolytic fibers, and it impaired strength, specific force, and endurance exercise capacity. Furthermore, as predicted by data from mouse models, we found that GADD45A expression in skeletal muscle was associated with muscle weakness in humans. Collectively, these findings identify GADD45A as a mediator of mitochondrial loss, atrophy, and weakness in mouse skeletal muscle and a potential target for muscle weakness in humans.
TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies
Basisty, Nathan , Shulman, Nicholas , Wehrfritz, Cameron, Marsh, Alexandra N. , Shah, Samah , Rose, Jacob , Ebert, Scott M. , Miller, Matthew J. , Rabinovitch, Peter S. , Adams, Christopher M. , MacCoss, Michael J. , MacLean, Brendan , Ebert, Scott, MacCoss, Michael J , Schilling, Birgit , Ebert, Scott M. , Adams, Christopher M , Basisty, Nathan , Dai, Dao‐Fu

Journal of Proteome Research | September 27, 2022 | Volume: 22 | Issue: 2 | Pages: 311-322

10.1021/acs.jproteome.2c00173 Get It

Continuous association of cadherin with β-catenin requires the non-receptor tyrosine-kinase Fer
Xu, Gang , Craig, Andrew W. , Greer, Peter A. , Miller, Matthew J. , Anastasiadis, Panos Z. , Lilien, Jack, Balsamo, Janne

Journal of Cell Science | June 28, 2004 | Volume: 117 | Issue: 15 | Pages: 3207-3219

10.1242/jcs.01174 Get It

The function of Type 1, classic cadherins depends on their association with the actin cytoskeleton, a connection mediated by α- and β-catenin. The phosphorylation state of β-catenin is crucial for its association with cadherin and thus the association of cadherin with the cytoskeleton. We now show that the phosphorylation of β-catenin is regulated by the combined activities of the tyrosine kinase Fer and the tyrosine phosphatase PTP1B. Fer phosphorylates PTP1B at tyrosine 152, regulating its binding to cadherin and the continuous dephosphorylation of β-catenin at tyrosine 654. Fer interacts with cadherin indirectly, through p120ctn. We have mapped the interaction domains of Fer and p120ctn and peptides corresponding to these sequences release Fer from p120ctn in vitro and in live cells, resulting in loss of cadherin-associated PTP1B, an increase in the pool of tyrosine phosphorylated β-catenin and loss of cadherin adhesion function. The effect of the peptides is lost when a β-catenin mutant with a substitution at tyrosine 654 is introduced into cells. Thus, Fer phosphorylates PTP1B at tyrosine 152 enabling it to bind to the cytoplasmic domain of cadherin, where it maintains β-catenin in a dephosphorylated state. Cultured fibroblasts from mouse embryos targeted with a kinase-inactivating ferD743R mutation have lost cadherin-associated PTP1B and β-catenin, as well as localization of cadherin and β-catenin in areas of cell-cell contacts. Expression of wild-type Fer or culture in epidermal growth factor restores the cadherin complex and localization at cell-cell contacts.