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Gonzalez‐Hernandez, Graciela

https://orcid.org/0000-0002-6416-9556

Mayo Clinic

University of Pennsylvania

Citations 3

PSB 2019 Workshop on Text Mining and Visualization for Precision Medicine
Lu, Zhiyong , Leaman, Robert , Du, Jingcheng , Fluck, Juliane , Holmes, John, Ouyang, Zhengqing , Schaaf, Sebastian , Zhang, Yuping , Gonzalez‐Hernandez, Graciela , Weissenbacher, Davy , Boland, Mary Regina , Chen, Yong , Greene, Casey S. , Kashyap, Aditya, Nielsen, Rikke Linnemann , Taroni, Jaclyn , Tao, Cui , Liu, Hongfang

Biocomputing 2019 | November 28, 2018 | Volume: No volume available | Issue: No issue available | Pages: 449-454

10.1142/9789813279827_0042 Get It

Advances in Text Mining and Visualization for Precision Medicine
Gonzalez‐Hernandez, Graciela , Sarker, Abeed , Greene, Casey S. , Greene, Casey S , O’Connor, Karen , Liu, Hongfang

Biocomputing 2018 | November 17, 2017 | Volume: No volume available | Issue: No issue available | Pages: 559-565

10.1142/9789813235533_0051 Get It

Using Empirically Constructed Lexical Resources for Named Entity Recognition
Jonnalagadda, Siddhartha , Wu, Stephen , Liu, Hongfang , Cohen, Trevor , Gonzalez‐Hernandez, Graciela

Biomedical Informatics Insights | June 24, 2013 | Volume: 6s1 | Issue: No issue available | Pages: BII.S11664

10.4137/bii.s11664 Get It

Because of privacy concerns and the expense involved in creating an annotated corpus, the existing small-annotated corpora might not have sufficient examples for learning to statistically extract all the named-entities precisely. In this work, we evaluate what value may lie in automatically generated features based on distributional semantics when using machine-learning named entity recognition (NER). The features we generated and experimented with include n-nearest words, support vector machine (SVM)-regions, and term clustering, all of which are considered distributional semantic features. The addition of the n-nearest words feature resulted in a greater increase in F-score than by using a manually constructed lexicon to a baseline system. Although the need for relatively small-annotated corpora for retraining is not obviated, lexicons empirically derived from unannotated text can not only supplement manually created lexicons, but also replace them. This phenomenon is observed in extracting concepts from both biomedical literature and clinical notes.