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Davicioni, Elai

https://orcid.org/0000-0001-9136-099X

Mayo Clinic

Veracyte (United States)

Citations 89

Characterization of PSMA and 18F-fluciclovine transporter gene expression in localized prostate cancer.
Alshalalfa, Mohammed , Zhao, Shuang G. , Herlemann, Annika , Mahal, Brandon A. , Kishan, Amar U. , Karnes, Jeffrey , Wong, Anthony , Feng, Felix Y. , Chu, Carissa Ellen , Sjöström, Martin , Zhao, Shuang G , Chou, Jonathan , Spratt, Daniel E. , Small, Eric J. , Porten, Sima P. , Hope, Thomas A. , Davicioni, Elai , Nguyen, Paul L. , Carroll, Peter R , Schaeffer, Edward M. , Cooperberg, Matthew R

Journal of Clinical Oncology | February 19, 2020 | Volume: 38 | Issue: 6_suppl | Pages: 295-295

10.1200/jco.2020.38.6_suppl.295 Get It

295 Background: While 18F-fluciclovine PET/CT is approved in the US and recommended by the NCCN, prostate-specific membrane antigen (PSMA) PET/CT is more common in Europe/Australia and recommended by the EAU. Less is known about the biology of lesions detected by either modality. 18F-fluciclovine PET relies on radiotracer uptake by amino acid transporters LAT1-4 and ASCT1-2. PSMA PET is dependent on surface expression of PSMA. We compared relative expression of PSMA and fluciclovine transporter genes in radical prostatectomy (RP) samples to determine their distribution across subtypes and correlation with outcomes. Methods: Gene expression data of 19,102 RP samples were analyzed using the Affymetrix Human Exon 1.0 ST microarray. 1,135 patients had long term follow up. Associations between expression of PSMA and fluciclovine transporter genes (LAT1-4 and ASCT1-2) and pathologic variables, molecular subtypes, and clinical outcomes were conducted. Results: All fluciclovine transporter genes (LAT 1-4, ASCT1-2) were expressed at lower levels than PSMA (p <0.0001). PSMA expression was positively correlated with genomic risk score and pathologic Gleason score (p<0.0001), but LAT2-3 and ASCT2 were inversely correlated with genomic risk in primary tumors (p<0.0001) and less expressed in GS 9-10 tumors (p<0.0001). PSMA expression was associated with worse metastasis-free survival (MFS) (HR 1.45, p=0.001) and lymph node involvement (HR 2.14, p<0.0001). Expression of LAT2, LAT3, ASCT2 expression was associated with better MFS (HR 0.85, 0.63, 0.74, p<0.0001-0.04). After multivariable adjustment, PSMA expression remained independently prognostic of poorer MFS (HR 1.3, p=0.028). Luminal B subtype was notable for PSMA overexpression; Luminal A was enriched in ASCT2 and LAT2 (p<0.0001). PSMA expression did not correlate with ERG fusion prostate cancers, but LAT2, ASCT1, and ASCT2 were overexpressed in ERG fusion negative tumors (p<0.0001). Conclusions: PSMA expression is associated with more aggressive disease and poorer clinical outcomes than fluciclovine transporter genes in localized prostate cancer. Molecular subtypes of prostate cancer vary in PSMA and fluciclovine transporter gene expression.
Transcriptome profiling of NRG Oncology/RTOG 9601: Validation of a prognostic genomic classifier in salvage radiotherapy prostate cancer patients from a prospective randomized trial.
Feng, Felix Y. , Huang, Huei–Chung, Simko, Jeffry, Dignam, James J., Seiferheld, Wendy, Lukka, Himanshu, Bahary, Jean-Paul , Pisansky, Thomas M. , Hall, William A. , Shah, Amit I., Pugh, Stephanie L. , Pollack, Alan , Shipley, William U. , Sandler, Howard M. , Davicioni, Elai , Nguyen, Paul L. , Efstathiou, Jason A. , Dicker, Adam P. , Spratt, Daniel E. , Tran, Phuoc T

Journal of Clinical Oncology | February 19, 2020 | Volume: 38 | Issue: 6_suppl | Pages: 276-276

10.1200/jco.2020.38.6_suppl.276 Get It

276 Background: Decipher is a genomic classifier (GC) that estimates risk of prostate cancer (PCa) distant metastases (DM) post-radical prostatectomy (RP). Herein, we validate the GC within the context of a randomized phase 3 trial. Methods: RP specimens from patients on the NRG/RTOG 9601 phase 3 placebo-controlled randomized trial of salvage radiotherapy (sRT) +/- 2 years of bicalutamide (NCT00002874) were centrally reviewed and the highest-grade tumor underwent RNA extraction. Samples passing quality control (QC) were run on a clinical-grade whole-transcriptome assay to assign the GC score (scale 0-1). Our NCTN-CCSC approved pre-specified statistical plan (NRG-GU-TS002 CSC0075) included the primary objective of validating the ability of the GC to independently prognosticate the cumulative incidence of DM, with secondary endpoints of prostate cancer-specific mortality (PCSM) and overall survival (OS). Results: Of patients with tissue available, 352 passed QC and were included for analysis. The final GC cohort was a representative sample of the overall cohort, with a median follow-up of 13 years. On multivariable analysis, the GC (continuous variable) was independently associated with DM (HR 1.19 [95%CI 1.06-1.35], p=0.003), PCSM (HR 1.37 [95%CI 1.18-1.61], p<0.001), and OS (HR 1.16 [95%CI 1.06-1.28], p=0.002) after adjusting for age, race, Gleason score, T-stage, margin status, entry PSA, and treatment arm. The estimated absolute impact of bicalutamide on 12-year OS was less in patients with lower vs higher GC scores (2.4% vs 8.9%), further demonstrated in men receiving early sRT at PSA <0.7 ng/mL (-2.0% vs 5.0%). Conclusions: This is the first validation of this GC in a prospective randomized trial cohort and demonstrates association of the GC with DM and PCSM independent of standard clinicopathologic variables. The GC may help personalize shared decision-making to weigh the absolute benefit from the addition of bicalutamide to sRT.
The impact of the expression of the transcription factor MYBL2 on outcomes of patients with localized and advanced prostate cancer.
Yoshikawa, Yuki , Wang, Victoria , Rajanala, Sai Harisha , Hirani, Rahim , Lee, Gwo‐Shu Mary , Liu, Glenn , DiPaola, Robert S. , Chen, Yu‐Hui , Mazzu, Ying Zhang , Chakraborty, Goutam , Jehane, Lina E. , Nandakumar, Subhiksha , Stopsack, Konrad H. , Davicioni, Elai , Carducci, Michael A. , Kantoff, Philip W. , Sweeney, Christopher J.

Journal of Clinical Oncology | February 19, 2020 | Volume: 38 | Issue: 6_suppl | Pages: 149-149

10.1200/jco.2020.38.6_suppl.149 Get It

149 Background: Patients with metastatic hormone-sensitive prostate cancer (mHSPC) have a variable response to ADT and some benefit from the addition of docetaxel or an androgen signaling pathway inhibitor. We found that loss of the epigenetic regulator KDM5D is associated with more aggressive prostate cancer (PC). We sought to determine whether MYBL2 which is regulated by KDM5D mediates this effect. MYBL2 is a transcription factor which controls key genes (e.g. FOXM1) and increases cell cycle progression and survival. Methods: AR expressing hormone-sensitive cell lines, LNCaP and LAPC4 were used. Motif analysis and CHiPseq of LNCaP with and without siKDM5D was performed and impact of modulation of KDM5D and MYBL2 in both cells on cell survival was assessed. Gene expression profiling (GEP) data assessed MYBL2’s association with KDM5D levels in localized disease (publicly available data) and mHSPC (Decipher whole Affymetrix platform on CHAARTED samples). Results: Silencing KDM5D increased H3K4me3 and increased MYBL2 expression. GEP showed a strong negative correlation between KDM5D and MYBL2 in patients with localized PC (-0.66; TCGA) but not from primary prostate cancer tissue with mHSPC (-0.03; CHAARTED). Cells with low KDM5D and high MYBL2 were androgen independent and more resistant to docetaxel. In TCGA, patients with high MYBL2 had a higher rate of relapse from localized disease. In patients with metastatic disease (CHAARTED) low MYBL2 was associated with a better overall survival (OS) on multivariable analysis when treated with ADT or ADT + docetaxel. Conclusions: Low MYBL2 is associated with a longer OS with ADT alone and ADT and docetaxel independent of clinical variables. Patients with high MYBL2 expression had better OS with ADT plus docetaxel compared with patients with high MYBL2 treated with ADT alone.[Table: see text]
A Genomic Classifier for Predicting Clinically Aggressive Luminal Bladder Tumors with Higher Rates of Pathological Up Staging
Jong, Joep J. de , Liu, Yang , Boorjian, Stephen A. , Bivalacqua, Trinity J. , Porten, Sima P. , Wheeler, Thomas M. , Svatek, Robert S. , Boormans, Joost L., Boormans, Joost L , Davicioni, Elai , Black, Peter C. , Lotan, Yair , Gibb, Ewan A.

Journal of Urology | February 14, 2020 | Volume: 204 | Issue: 2 | Pages: 239-246

10.1097/ju.0000000000000798 Get It

Genomic and clinical characterization of stromal infiltration markers in prostate cancer
Mahal, Brandon A. , Alshalalfa, Mohammed , Zhao, Shuang G. , Beltran, Himisha , Chen, William S. , Chipidza, Fallon , Karnes, R. Jeffrey , Ku, Sheng‐Yu , Muralidhar, Vinayak , Schaeffer, Edward M. , Spratt, Daniel E. , Feng, Felix Y. , Nguyen, Paul L. , Spratt, Daniel E , Zhao, Shuang G , Davicioni, Elai , Lotan, Tamara Levin , Rebbeck, Timothy R.

Cancer | January 6, 2020 | Volume: 126 | Issue: 7 | Pages: 1407-1412

10.1002/cncr.32688 Get It

BackgroundThe progression of prostate cancer is a complex, multistep process that involves molecular alterations in cells of the tumor and the microenvironment, with associated interactions between the stroma and epithelium. Genomic expression analyses of stromal infiltration markers were performed to determine the significance thereof in prostate cancer.MethodsGenome‐wide expression profiles of formalin‐fixed, paraffin‐embedded radical prostatectomy samples were evaluated from a prospective registry cohort (n = 5239) and 3 retrospective institutional cohorts (n = 1135). Two independent stromal gene expression signatures implied stromal infiltration. Cox proportional hazards regression defined the association between stromal infiltration expression and metastasis‐free survival (MFS).ResultsStromal expression scores were correlated with stromal signature genes and with other key stromal markers (CAV1, VIM, and TAGLN), basal activity, and CD3 and CD4 immune biomarkers (r > 0.5 for all). The top decile of stromal expression was associated with high genomic risk scores (Decipher ≥ 0.6) , high Cancer of the Prostate Risk Assessment–Postsurgical scores, Gleason 9 to 10 disease, and a higher risk for metastasis (hazard ratio, 2.35; 95% CI, 1.37‐4.02; P = .001). A higher stromal infiltration score was also associated with decreased expression of DNA repair genes and higher radiation sensitivity genomic scores. Postoperative radiation therapy (RT) was associated with an MFS benefit for patients with high stromal scores, but not for patients with low stromal scores (Pinteraction = .02).ConclusionsExpression of stromal infiltration markers is correlated with prostate cancer aggressiveness/progression and may be predictive of a response to RT. Stromal infiltration markers should be studied and considered for incorporation into clinical prognostication and decision making.
Transcriptomic Heterogeneity of Androgen Receptor Activity Defines a de novo low AR-Active Subclass in Treatment Naïve Primary Prostate Cancer
Spratt, Daniel E. , Alshalalfa, Mohammed , Fishbane, Nick , Weiner, Adam B. , Mehra, Rohit , Mahal, Brandon A. , Lehrer, Jonathan , Zhao, Shuang G. , Speers, Corey , Morgan, Todd M. , Dicker, Adam P. , Freedland, Stephen J. , Karnes, R. Jeffery, Weinmann, Sheila , Ross, Ashley E. , Nguyen, Paul L. , Feng, Felix Y. , Chinnaiyan, Arul M., Schaeffer, Edward M. , Speers, Corey , Davicioni, Elai , Den, Robert B , Spratt, Daniel E , Morgan, Todd M , Dicker, Adam P , Liu, Yang , Zhao, Shuang G , Karnes, R. Jeffrey , Davicioni, Elai , Den, Robert B. , Lotan, Tamara Levin

Clinical Cancer Research | September 12, 2019 | Volume: 25 | Issue: 22 | Pages: 6721-6730

10.1158/1078-0432.ccr-19-1587 Get It

Abstract Purpose: The heterogeneity of androgen receptor (AR)-activity (AR-A) is well-characterized in heavily treated metastatic castration-resistant prostate cancer (mCRPC). However, the diversity and clinical implications of AR-A in treatment-naïve primary prostate cancer is largely unknown. We sought to characterize AR-A in localized prostate cancer and understand its molecular and clinical implications. Experimental Design: Genome-wide expression profiles from prostatectomy or biopsy samples from 19,470 patients were used, all with independent pathology review. This was comprised of prospective discovery (n = 5,239) and validation (n = 12,728) cohorts, six retrospective institutional cohorts with long-term clinical outcomes data (n = 1,170), and The Cancer Genome Atlas (n = 333). Results: A low AR-active subclass was identified, which comprised 9%–11% of each cohort, and was characterized by increased immune signaling, neuroendocrine expression, and decreased DNA repair. These tumors were predominantly ERG and basal subtype. Low AR-active tumors had significantly more rapid development of recurrence or metastatic disease across cohorts, which was maintained on multivariable analysis [HR, 2.61; 95% confidence interval (CI), 1.22–5.60; P = 0.014]. Low AR-active tumors were predicted to be more sensitive to PARP inhibition, platinum chemotherapy, and radiotherapy, and less sensitive to docetaxel and androgen-deprivation therapy. This was validated clinically, in that low AR-active tumors were less sensitive to androgen-deprivation therapy (OR, 0.41; 95% CI, 0.21–0.80; P = 0.008). Conclusions: Leveraging large-scale transcriptomic data allowed the identification of an aggressive subtype of treatment-naïve primary prostate cancer that harbors molecular features more analogous to mCRPC. This suggests that a preexisting subgroup of patients may have tumors that are predisposed to fail multiple current standard-of-care therapies and warrant dedicated therapeutic investigation.
A four‐gene transcript score to predict metastatic‐lethal progression in men treated for localized prostate cancer: Development and validation studies
Cheng, Anqi , Zhao, Shanshan , Wright, Jonathan L. , Kolb, Suzanne , Karnes, R. Jeffrey , Jenkins, Robert B. , Ostrander, Elaine A. , Feng, Ziding , Fan, Jian‐Bing , Dai, James Y. , Stanford, Janet L. , Stanford, Janet L , Dai, James Y , FitzGerald, Liesel M. , Davicioni, Elai

The Prostate | August 3, 2019 | Volume: 79 | Issue: 14 | Pages: 1589-1596

10.1002/pros.23882 Get It

AbstractBackgroundMolecular studies have tried to address the unmet need for prognostic biomarkers in prostate cancer (PCa). Some gene expression tests improve upon clinical factors for prediction of outcomes, but additional tools for accurate prediction of tumor aggressiveness are needed.MethodsBased on a previously published panel of 23 gene transcripts that distinguished patients with metastatic progression, we constructed a prediction model using independent training and testing datasets. Using the validated messenger RNAs and Gleason score (GS), we performed model selection in the training set to define a final locked model to classify patients who developed metastatic‐lethal events from those who remained recurrence‐free. In an independent testing dataset, we compared our locked model to established clinical prognostic factors and utilized Kaplan‐Meier curves and receiver operating characteristic analyses to evaluate the model's performance.ResultsThirteen of 23 previously identified gene transcripts that stratified patients with aggressive PCa were validated in the training dataset. These biomarkers plus GS were used to develop a four‐gene (CST2, FBLN1, TNFRSF19, and ZNF704) transcript (4GT) score that was significantly higher in patients who progressed to metastatic‐lethal events compared to those without recurrence in the testing dataset (P = 5.7 × 10−11). The 4GT score provided higher prediction accuracy (area under the ROC curve [AUC] = 0.76; 95% confidence interval [CI] = 0.69‐0.83; partial area under the ROC curve [pAUC] = 0.008) than GS alone (AUC = 0.63; 95% CI = 0.56‐0.70; pAUC = 0.002), and it improved risk stratification in subgroups defined by a combination of clinicopathological features (ie, Cancer of the Prostate Risk Assessment‐Surgery).ConclusionOur validated 4GT score has prognostic value for metastatic‐lethal progression in men treated for localized PCa and warrants further evaluation for its clinical utility.
Validation of a genomic classifier for prediction of metastasis following postoperative salvage radiation therapy.
Choeurng, Voleak, Plessis, Marguerite du, Yousefi, Kasra, Lam, Lucia L.C., Buerki, Christine, Trabulsi, Edouard J. , Dicker, Adam P. , Karnes, Jeffrey , Freedland, Stephen J. , Dicker, Adam P , Den, Robert B. , Davicioni, Elai , Howard, Lauren E. , Hoedt, Amanda M. De

Journal of Clinical Oncology | March 7, 2019 | Volume: 33 | Issue: 15_suppl | Pages: 5016-5016

10.1200/jco.2015.33.15_suppl.5016 Get It

AXIN2 expression predicts prostate cancer recurrence and regulates invasion and tumor growth.
Hu, Brian , Fairey, Adrian, Madhav, Anisha, Li, Meng , Groshen, Susan , Stephens, Craig, Virk, Navneet, Martin, Sue Ellen , Erho, Nicholas , Jenkins, Robert B. , Xu, Tong , Xu, Yucheng, Goldkorn, Amir , Yang, Dongyun , Kim, Philip, Wang, Lina , Davicioni, Elai , Den, Robert B. , Gill, Inderbir S. , Quinn, David I

Journal of Clinical Oncology | March 7, 2019 | Volume: 33 | Issue: 15_suppl | Pages: e16092-e16092

10.1200/jco.2015.33.15_suppl.e16092 Get It

Recalibration of genomic risk prediction models in prostate cancer to improve individual-level predictions.
Choeurng, Voleak, Luo, Bin , Yousefi, Kasra, Shin, Heesun , Haddad, Zaid , Ross, Ashley E. , Dicker, Adam P. , Karnes, R. Jeffrey , Thompson, Darby J. S., Dicker, Adam P , Davicioni, Elai , Schaeffer, Edward M. , Den, Robert B.

Journal of Clinical Oncology | March 7, 2019 | Volume: 33 | Issue: 15_suppl | Pages: e16122-e16122

10.1200/jco.2015.33.15_suppl.e16122 Get It