Mapunda, Josephine

Abstract Background Upstream regulators of the homologous recombination (HR) repair pathway are promising targets for overcoming temozolomide (TMZ) resistance. We investigated whether pharmacologic inhibition of Retinoblastoma Binding Protein 4 (RBBP4)/p300-mediated HR activity by CCS1477 or NEO2734 sensitizes glioblastoma (GBM) to TMZ. Methods Lentiviral-mediated shRNA was used to silence RBBP4 and EP300 (p300). A fluorescence-based multiplex flow-cytometric host cell reactivation assay was used to measure DNA repair activity, while TMZ-induced double-strand breaks (DSBs) were assessed using a comet assay and γ-H2AX foci formation. Cytotoxicity was monitored using an Incucyte device, and survival analysis was performed to evaluate efficacy in orthotopic tumor models. Drug distribution was assessed using liquid chromatography-mass spectrometry (LC-MS/MS) and acetylation of lysine 27 of histone H3 (H3K27Ac) immunofluorescence for target inhibition. Promoter occupancy was determined using chromatin immunoprecipitation. Results GBM patient-derived xenograft tumors with high RBBP4 expression showed elevated levels of 6 HR genes (RAD51, RAD50, BRCA1, BARD1, BRIP1, and FIGNL1), with RAD51 and BRIP1 correlating strongly with RBBP4 and p300. Silencing RBBP4 or p300 decreased HR and microhomologous-mediated end joining (MMEJ) activity and delayed repair of TMZ-induced DSBs. CCS1477 and NEO2734 suppressed RAD51 and MYC in a concentration-dependent manner, prolonged γ-H2AX foci, and enhanced TMZ sensitivity. Both compounds inhibited H3K27Ac and were detectable in orthotopic tumors by LC-MS/MS and significantly extended survival alone and in combination with TMZ. Conclusion These findings suggest that the RBBP4/p300-axis is a key regulator of HR-mediated repair of TMZ-induced DSBs, and inhibition by either CCS1477 or NEO2734 may be beneficial as monotherapy, but further studies are needed to determine the benefit of combining these agents with TMZ.

Abstract BACKGROUND Posterior fossa group A ependymomas (PFAs) and diffuse midline gliomas (DMGs) are lethal pediatric brain tumors characterized by global loss of H3K27me3. This epigenetic disruption is caused by either EZHIP overexpression or H3.1/H3.3K27M mutations, which are mutually exclusive. EZHIP is aberrantly expressed in nearly all PFAs and approximately 10% of DMGs, while K27M mutations are found in ~80% of DMGs. In normal development, EZHIP expression is restricted to primordial germ cells during meiosis. We used human neural stem cells (NSCs), which give rise to ependymal and oligodendrocyte precursor lineages, to model EZHIP’s developmental effects. These cell types reflect the likely cells of origin for PFAs and DMGs, making them a biologically relevant platform to interrogate early tumorigenic mechanisms. METHODS AND RESULTS EZHIP was expressed in NSCs, astrocytes, and DMG lines. In NSCs, EZHIP induced strong repression of genome stability and mitotic fidelity genes, confirmed by gene set enrichment analysis (NES –2.91, p = 1e–10), and activated stem-like developmental programs. This repression was not observed in differentiated cells or tumor lines, indicating an NSC-specific vulnerability. The repressed targets were highly enriched for E2F-regulated genes (NES –3.61, p = 1e–10). EZHIP-expressing NSCs showed reduced DNA repair capacity, mitotic abnormalities, and continued proliferation. EZHIP is known to impair double-strand break repair by binding PALB2 and blocking BRCA2 recruitment, and to disrupt TopoIIα localization via H3K27me3 depletion, compounding mitotic stress in NSCs. CONCLUSIONS EZHIP disrupts genome maintenance and promotes transformation selectively in neural progenitors during a defined developmental window. Published data show that H3.3K27M induces profound transcriptional reprogramming in week 13 human NSCs, but these effects are diminished or absent by week 19, suggesting a shared, time-limited window of epigenetic vulnerability in both H3K27M- and EZHIP-driven tumors. Understanding this context-dependent repression has important implications for identifying stage-specific therapeutic vulnerabilities in pediatric gliomas.

Abstract The RBBP4/p300 complex was recently shown to control genes critical for DNA damage repair and may play a role in glioblastoma (GBM) therapy responsiveness, especially to temozolomide (TMZ). However, the role of this complex in the modulation of the GBM tumor microenvironment (GBM-TME) remains elusive. Because pro-tumorigenic GBM-TME is primarily due to angiogenesis and immune tolerance, we evaluated whether the RBBP4/p300 complex may control these critical processes. To that end, we used shRNA to silence each RBBP4/p300 complex member in GBM43 cells and RNAseq to identify angiogenesis and immune genes regulated by this complex. Our data demonstrated that silencing RBBP4 or p300 suppressed the expression of HIF1α and several other hypoxia response genes, including VEGFA and DDIT4, suggesting that RBBP4/p300 complex may regulate angiogenesis. Consistent with a role in regulating angiogenesis, culture medium conditioned by GBM43 cells expressing the control non-targeting shRNA (shNT) significantly induced angiogenic tube formation by human umbilical vein endothelial cells (HUVEC). In contrast, this effect was blocked by the medium conditioned by the shRBBP4 or shp300 expressing cells. Both shRBBP4 and shp300 expressing cells failed to activate HIF1α accumulation and other signaling in response to hypoxia. Additionally, the control shNT-conditioned medium inhibited IFN-γ production while the medium conditioned by the shRBBP4 or shp300 expressing cells supported IFN-ɣ production from CD8+ T cells. Intriguingly, silencing RBBP4 or p300 also suppressed the expression of CCL2 and PD-L1 (CD274). CCL2 protein is a chemokine that promotes TME infiltration by myeloid-derived suppressor cells (MDSCs), while PD-L1 interacts with PD1 to suppress cytotoxic CD8+ T cell activation. Although this is an ongoing investigation, we conclude that RBBP4/p300 complex mediates the expression of hypoxia response genes, including HIF1α, and immunosuppressive genes, including PD-L1, and this activity may enhance angiogenic and immunosuppressed GBM-TME, making this complex a potential target for GBM therapy.