McKeon, Andrew

Autoimmune diseases arise when B and T lymphocytes lose tolerance to self. Yet in most disorders, the underlying molecular determinants, including autoantibodies, epitopes and lymphocyte clones that drive tissue injury remain undefined. Rapid-onset obesity with hypothalamic dysfunction, hypoventilation and autonomic dysregulation (ROHHAD) is a rare and often fatal pediatric neuroendocrine syndrome with strong evidence of antigen-driven paraneoplastic autoimmunity, including association with the intracellular autoantigen ZSCAN1. However, the effector immune circuit and the epitope-level determinants operating within the hypothalamus and brainstem have remained unknown. To address this challenge in ROHHAD and more broadly in autoimmune disease, we developed the Autoimmune Epitope and immunoGlobulin/Immune-receptor identification System (AEGIS), an integrated framework that links immune repertoires to their cognate self-epitopes. AEGIS combines B cell and T cell receptor profiling from sites of tissue injury with high-resolution epitope mapping, direct sequencing of antigen-specific autoantibodies, in silico antibody-antigen folding, selection, and T cell antigen discovery. Applied to a deeply phenotyped child with ROHHAD, AEGIS revealed a compartmentalized, clonally restricted immune response in which brain-deposited IgG and expanded cerebrospinal fluid B cell and CD4 T cell clonotypes converged on shared ZSCAN1 epitopes, resolved to minimal determinants and peptide-MHC ligands. These findings provide a clone- and epitope-linked mechanistic map of ROHHAD autoimmunity and establish a generalizable framework for identifying candidate pathogenic clones and antigens across diverse autoimmune diseases.

Abstract Background To develop and validate a sensitive live cell-binding assay using flow cytometry to detect a3ß4-ganglionic nicotinic acetylcholine receptor (gnAChR) antibodies for diagnosis of autoimmune autonomic ganglionopathy (AAG, a subset of autoimmune autonomic neuropathies). The current radioimmunoprecipitation assay (RIPA) method has high false positive rate and utilizes radioactivity. Methods HEK293 cells were transiently transfected to express human a3ß4-gnAChR subunits, along with NACHO and RIC3 chaperons, and GFP for detection. Transfected cells were treated with 1mM nicotine liquid for 18-22 hours prior to lifting cells for flow cytometry. The IBI (IgG Binding Index) was then calculated as the median fluorescence intensity (MFI) of AF647 of the a3ß4-gnAChR subunits expressing cells divided by the MFI of the AF647 HEK293 expressing cells. Humanized AChR-specific monoclonal antibody (mAb03) was used as a single-point calibrator. The cut-off index (COI) ratio is calculated by dividing the IBI obtained from a sample by the established IBI cut-off value of the mAB03 calibrator set by the assay. A ratio >1 indicates a positive result, while a ratio below 1 is negative. The study tested sera from 83 Mayo Clinic patients suspected of having autoimmune autonomic ganglionopathy (AAG), with a total of 100 samples collected over several years (40 from patients with clinically confirmed AAG, and 60 from patients without AAG), all previously positive for a3-gnAChR antibodies by RIPA. Additionally, 130 control samples were included: 90 from healthy individuals, 22 with hypergammaglobulinemia, and 18 with systemic lupus erythematosus. Results Median RIPA a3ß4-gnAChR value among 40 AAG patient samples was 2.58 nmol/L (range, 0.06-29.1 nmol/L) and among 60 non-AAG patients was 0.14 nmol/L (range, 0.01-4.43 nmol/L). The mAB03 calibrator median IBI value across assays was 2.1 (range, 1.6-2.7). The COI ratio was calculated using the calibrated IBI values. Thirty-eight of 40 AAG patient samples were considered positive, resulting in median IBI of 3.10 (range, 1.29-6.71); sensitivity 95%. None of non-AAG patients and controls were considered positive; median IBI of 0.38 (range, 0.14-0.51); specificity 100%. The two negative AAG patient samples (IBI, 0.43 and 0.43) were from patients in remission (treated with immune suppressants), and had RIPA titers of 0.06 nmol/L and 0.74 nmol/L. Conclusion The a3ß4-gnAChR-IgG flow cytometry assay has high sensitivity and specificity for AAG-related a3-AChR antibodies. It was able to distinguish AAG patients from non-AAG patients and controls effectively. The flow cytometry assay’s cut-off index ratio effectively identifies AAG patients while remaining negative for non-AAG and control samples.

AbstractWith the discovery of an expanding number of neural autoantibodies, autoimmune etiologies of seizures have been increasingly recognized. Clinical phenotypes have been identified in association with specific underlying antibodies, allowing an earlier diagnosis. These phenotypes include faciobrachial dystonic seizures with LGI1 encephalitis, neuropsychiatric presentations associated with movement disorders and seizures in NMDA‐receptor encephalitis, and chronic temporal lobe epilepsy in GAD65 neurologic autoimmunity. Prompt recognition of these disorders is important, as some of them are highly responsive to immunotherapy. The response to immunotherapy is highest in patients with encephalitis secondary to antibodies targeting cell surface synaptic antigens. However, the response is less effective in conditions involving antibodies binding intracellular antigens or in Rasmussen syndrome, which are predominantly mediated by cytotoxic T‐cell processes that are associated with irreversible cellular destruction. Autoimmune encephalitides also may have a paraneoplastic etiology, further emphasizing the importance of recognizing these disorders. Finally, autoimmune processes and responses to novel immunotherapies have been reported in new‐onset refractory status epilepticus (NORSE) and febrile infection‐related epilepsy syndrome (FIRES), warranting their inclusion in any current review of autoimmune‐associated seizure disorders.