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ByongSu, Choi

Mayo Clinic

Yonsei University

Citations 2

A high‐resolution cone beam computed tomography (HRCBCT) reconstruction framework for CBCT‐guided online adaptive therapy
Park, Justin C., Song, Bongyong , Lü, Bo , Tan, Jun , Parisi, Alessio , Denbeigh, Janet M. , Yaddanpudi, Sridhar, ByongSu, Choi, Kim, Jin Sung , Beltran, Chris , Yaddanapudi, Sridhar , Tan, Jun , Denbeigh, Janet, Choi, Byongsu , Beltran, Chris J , Parisi, Alessio , Yaddanapudi, Sridhar , Liang, Xiaoying , Choi, Byongsu, Furutani, Keith M. , Tan, Jun

Medical Physics | September 10, 2023 | Volume: 50 | Issue: 10 | Pages: 6490-6501

10.1002/mp.16734 Get It

AbstractBackgroundKilo‐voltage cone‐beam computed tomography (CBCT) is a prevalent modality used for adaptive radiotherapy (ART) due to its compatibility with linear accelerators and ability to provide online imaging. However, the widely‐used Feldkamp‐Davis‐Kress (FDK) reconstruction algorithm has several limitations, including potential streak aliasing artifacts and elevated noise levels. Iterative reconstruction (IR) techniques, such as total variation (TV) minimization, dictionary‐based methods, and prior information‐based methods, have emerged as viable solutions to address these limitations and improve the quality and applicability of CBCT in ART.PurposeOne of the primary challenges in IR‐based techniques is finding the right balance between minimizing image noise and preserving image resolution. To overcome this challenge, we have developed a new reconstruction technique called high‐resolution CBCT (HRCBCT) that specifically focuses on improving image resolution while reducing noise levels.MethodsThe HRCBCT reconstruction technique builds upon the conventional IR approach, incorporating three components: the data fidelity term, the resolution preservation term, and the regularization term. The data fidelity term ensures alignment between reconstructed values and measured projection data, while the resolution preservation term exploits the high resolution of the initial Feldkamp‐Davis‐Kress (FDK) algorithm. The regularization term mitigates noise during the IR process. To enhance convergence and resolution at each iterative stage, we applied Iterative Filtered Backprojection (IFBP) to the data fidelity minimization process.ResultsWe evaluated the performance of the proposed HRCBCT algorithm using data from two physical phantoms and one head and neck patient. The HRCBCT algorithm outperformed all four different algorithms; FDK, Iterative Filtered Back Projection (IFBP), Compressed Sensing based Iterative Reconstruction (CSIR), and Prior Image Constrained Compressed Sensing (PICCS) methods in terms of resolution and noise reduction for all data sets. Line profiles across three line pairs of resolution revealed that the HRCBCT algorithm delivered the highest distinguishable line pairs compared to the other algorithms. Similarly, the Modulation Transfer Function (MTF) measurements, obtained from the tungsten wire insert on the CatPhan 600 physical phantom, showed a significant improvement with HRCBCT over traditional algorithms.ConclusionThe proposed HRCBCT algorithm offers a promising solution for enhancing CBCT image quality in adaptive radiotherapy settings. By addressing the challenges inherent in traditional IR methods, the algorithm delivers high‐definition CBCT images with improved resolution and reduced noise throughout each iterative step. Implementing the HR CBCT algorithm could significantly impact the accuracy of treatment planning during online adaptive therapy.
Technical note: Progressive deep learning: An accelerated training strategy for medical image segmentation
ByongSu, Choi, Olberg, Sven, Park, Justin C., Kim, Jin Sung , Shrestha, Deepak K. , Yaddanapudi, Sridhar , Beltran, Chris , Yaddanapudi, Shridhar, Beltran, Chris J , Yaddanapudi, Sridhar , Choi, Byongsu, Furutani, Keith M.

Medical Physics | February 10, 2023 | Volume: 50 | Issue: 8 | Pages: 5075-5087

10.1002/mp.16267 Get It

AbstractBackgroundRecent advancements in Deep Learning (DL) methodologies have led to state‐of‐the‐art performance in a wide range of applications especially in object recognition, classification, and segmentation of medical images. However, training modern DL models requires a large amount of computation and long training times due to the complex nature of network structures and the large number of training datasets involved. Moreover, it is an intensive, repetitive manual process to select the optimized configuration of hyperparameters for a given DL network.PurposeIn this study, we present a novel approach to accelerate the training time of DL models via the progressive feeding of training datasets based on similarity measures for medical image segmentation. We term this approach Progressive Deep Learning (PDL).MethodsThe two‐stage PDL approach was tested on the auto‐segmentation task for two imaging modalities: CT and MRI. The training datasets were ranked according to similarity measures between each sample based on Mean Square Error (MSE), Peak Signal‐to‐Noise Ratio (PSNR), Structural Similarity Index (SSIM), and the Universal Quality Image Index (UQI) values. At the start of the training process, a relatively coarse sampling of training datasets with higher ranks was used to optimize the hyperparameters of the DL network. Following this, the samples with higher ranks were used in step 1 to yield accelerated loss minimization in early training epochs and the total dataset was added in step 2 for the remainder of training.ResultsOur results demonstrate that the PDL approach can reduce the training time by nearly half (∼49%) and can predict segmentations (CT U‐net/DenseNet dice coefficient: 0.9506/0.9508, MR U‐net/DenseNet dice coefficient: 0.9508/0.9510) without major statistical difference (Wilcoxon signed‐rank test) compared to the conventional DL approach. The total training times with a fixed cutoff at 0.95 DSC for the CT dataset using DenseNet and U‐Net architectures, respectively, were 17 h, 20 min and 4 h, 45 min in the conventional case compared to 8 h, 45 min and 2 h, 20 min with PDL. For the MRI dataset, the total training times using the same architectures were 2 h, 54 min and 52 min in the conventional case and 1 h, 14 min and 25 min with PDL.ConclusionThe proposed PDL training approach offers the ability to substantially reduce the training time for medical image segmentation while maintaining the performance achieved in the conventional case.