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Tariq, Amara

https://orcid.org/0000-0001-5932-2491

Mayo Clinic

Mayo Clinic in Arizona

Citations 19

From Routine Imaging to Risk Stratification: Multimodal Vision–Language Survival Modeling for Pancreatic Cancer
Le, David , Medero, Ramon Luis Correa, Tariq, Amara, Joshi, Vedant, Zhang, Zhemin , Murlidhar, Fnu, Dong, Hexin, Peng, Yifan, Shih, George, Wang, Zhen, Pannala, Rahul , Yano, Motoyo , Banerjee, Imon, Correa, Ramón , Tariq, Amara , Dong, Hexin, Peng, Yifan , Shih, George , Banerjee, Imon

2026 IEEE 14th International Conference on Healthcare Informatics (ICHI) | August 12, 2026 | Volume: No volume available | Issue: No issue available | Pages: 515-524

10.1109/ichi69079.2026.00071 Get It

From Generation to Collaboration: Using LLMs to Edit for Empathy in Healthcare
Luo, Man, Bahareh, Bahareh, Tariq, Amara, Abbas, Halim, Ghaffar, Umar, Warren, Christopher J, Kolade, Segun O., Abdul-Muhsin, Haidar M., Tariq, Amara , Ghaffar, Umar , Warren, Christopher J. , Kolade, Segun O.

No container title available | July 14, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.21203/rs.3.rs-10022883/v1 Get It

Abstract Clinical empathy is essential for patient care, but physicians need continually balance emotional warmth with factual precision under the cognitive and emotional constraints of clinical practice. This study investigates how large language models (LLMs) can function as empathy editors, refining physicians’ written responses to enhance empathetic tone while preserving underlying medical information. More importantly, we introduce novel quantitative metrics, an Empathy Ranking Score and a MedFactChecking Score to systematically assess both emotional and factual quality of the responses. Experimental results show that LLM-edited responses significantly increase perceived empathy while preserving factual accuracy compared with fully LLM-generated outputs. These findings suggest that using LLMs as editorial assistants, rather than autonomous generators , offers a safer, more effective pathway to empathetic and trustworthy AI-assisted healthcare communication.
Pre-diagnostic imaging and radiology report–based risk modeling for pancreatic ductal adenocarcinoma.
Le, David , Correa-Medero, Ramon, Tariq, Amara , Joshi, Vedant , Murlidhar, Fnu, Dong, Hexin, Peng, Yifan, Shih, G L, Wang, Zhen J., Pannala, Rahul , Yano, Motoyo , Banerjee, Imon, Correa, Ramón , Shih, George , Banerjee, Imon

Journal of Clinical Oncology | May 28, 2026 | Volume: 44 | Issue: 16_suppl | Pages: No page available

10.1200/jco.2026.44.16_suppl.e16017 Get It

e16017 Background: Pancreatic ductal adenocarcinoma (PDAC) is the most common form of pancreatic cancer and remains one of the deadliest malignancies worldwide, largely due to late-stage diagnosis. Early-stage PDAC is frequently asymptomatic, limiting opportunities for timely detection and intervention. We aimed to develop prognostic models using routinely acquired pre-diagnostic clinical data to identify individuals at high risk for PDAC prior to clinical manifestation. Methods: We conducted a retrospective study of patients treated at Mayo Clinic sites in Rochester, MN; Phoenix, AZ; and Jacksonville, FL between January 2011 and February 2023. The cohort included 1,151 patients with PDAC and 3,745 noncancer controls. CT scans were standardized to axial abdominal acquisitions with slice thickness between 0.8–3.0 mm. Radiology reports were de-identified, normalized, and parsed into structured sections (Indications, Findings, Impression), with an additional pancreas-specific section aggregating pancreas-related sentences. Demographic and clinical variables, e.g., age, sex, race, etc., were encoded using a templated sentence representation. All textual inputs were embedded using a Sentence-BERT model. A multimodal deep learning survival model was developed to integrate CT imaging, radiology report embeddings, and demographic features. The model was trained using a negative log-likelihood loss to estimate patient-specific PDAC risk scores. Model performance was assessed using the concordance index (C-index). Internal validation included patients from MN and AZ sites, while external validation used the FL cohort. Results: We evaluated unimodal (imaging, text, and demographics) and multimodal inputs. Fusion of imaging, radiology report, and demographic features achieved the highest performance, with internal and external validation C-indices of 0.885 (95% CI, 0.856–0.908) and 0.751 (95% CI, 0.719–0.783), respectively. Subgroup analysis by tumor location demonstrated differential performance. For pancreatic head tumors, internal and external C-indices were 0.916 (95% CI, 0.841–0.960) and 0.778 (95% CI, 0.730–0.823). For pancreatic body tumors, C-indices were 0.954 (95% CI, 0.897–0.997) internally and 0.929 (95% CI, 0.897–0.953) externally. For pancreatic tail tumors, internal and external C-indices were 0.903 (95% CI, 0.830–0.974) and 0.789 (95% CI, 0.689–0.874). Conclusions: A multimodal deep survival model leveraging pre-diagnostic CT imaging, radiology report embeddings, and demographic data can effectively identify individuals at high risk for PDAC prior to clinical diagnosis. Differences in performance were observed across pancreatic head, body, and tail tumors. This approach highlights the potential of opportunistic cancer risk stratification from routine imaging to enable earlier detection and targeted intervention strategies.
Self‐supervised out‐of‐distribution detection—Metal implants and other anomaly
Ramasamy, Gokul , Tariq, Amara , Fahrenholtz, Samuel J. , Patel, Bhavik N. , Sensakovic, William F. , Banerjee, Imon

Medical Physics | February 20, 2026 | Volume: 53 | Issue: 2 | Pages: No page available

10.1002/mp.70339 Get It

Abstract Background Despite the high precision of deep learning models on internal tests on CT, their effectiveness often drops on external validation due to artifacts caused by patient motion and implants like metal or silicone that were not accounted for in the carefully curated training data. Potential wide categories of “unknown” anomalies within a CT exam makes training a supervised model for out‐of‐distribution (OOD) identification impractical, especially when considering unseen external data. Purpose To develop an artificial intelligence (AI) model to detect and identify anomalies/OOD data in abdominal–pelvis CT exams for the purpose of improving the performance of downstream applications. Methods Our proposed 2D and 3D generative architecture receives the third lumbar vertebra (L3) slice (slice‐level model) or all the slices from the series (series‐level model), generates a reconstruction and the secondary part of our architecture—anomaly score computation block, computes the anomalies pixels/voxels (slice‐level/series‐level) to identify anomalous L3‐slices/volumes (slice‐level/series‐level). We trained on data from over 2850 abdominal–pelvis CT volumes from adults over age 50 years collected throughout multiple Mayo Clinic campuses (60% female; mean age: 66.9, 92.4% non‐Hispanic White) and tested on a prospective test set of 544 CTs from July 2024 (47.3% female; mean age: 70.9, 94% non‐Hispanic White) as well as an external test set. Results We found that while traditional methods show moderate success, our generative models—Vector Quantized Variational Autoencoder (VQVAE) and Vision Transformer‐Masked Autoencoder (VIT‐MAE)—deliver excellent results with negligible false positives (FPs) and are also superior in identifying varied types of OOD samples. Prospective analysis showed the model was able to handle the under‐documentation of anomaly in radiology reports with 86.11% true positive (TP) rate. We also performed external validation using the publicly available AbdominalCT‐1k dataset, which contains 1062 CT scans compiled from several existing benchmark datasets. The model achieved a 75.26% TP rate, while the 24.7% FP rate was primarily triggered by anomalies located outside the body. Conclusions The proposed method can be leveraged to detect both intra‐ and interclass OOD data from abdominal CT images and can assess the quality of CT datasets to provide actionable insights. This workflow is particularly valuable for nonshareable healthcare collaborations, where it can be deployed as a service within local firewalls for automated dataset curation without prior knowledge about the OOD types. The implementation of the algorithm is available in the GitHub: https://github.com/gokul‐ramasamy/implant_detection.git .
Inpatient and Outpatient Radiology Report Access After the 21st Century Cures Act
Tariq, Amara , Schmitz, John J. , Varner, Jacob, Metcalfe, Allie M., Pollock, Jordan Riley , Sharma, Umesh, Tan, Nelly

JAMA Network Open | August 27, 2025 | Volume: 8 | Issue: 8 | Pages: e2528683

10.1001/jamanetworkopen.2025.28683 Get It

This cohort study examines trends in patient access of radiology imaging results after implementation of the 21st Century Cures Act in different clinical settings.
Open-Source Hybrid Large Language Model Integrated System for Extraction of Breast Cancer Treatment Pathway From Free-Text Clinical Notes
Tariq, Amara , Sikha, Madhu Babu , Kurian, Allison W. , Ward, Kevin C. , Keegan, Theresa H.M. , Rubin, Daniel L. , Banerjee, Imon , Sikha, Madhu , Ward, Kevin , Banerjee, Imon , Kurian, Allison W , Rubin, Daniel L

JCO Clinical Cancer Informatics | June 27, 2025 | Volume: No volume available | Issue: 9 | Pages: No page available

10.1200/cci-25-00002 Get It

PURPOSE Automated curation of breast cancer treatment data with minimal human involvement could accelerate the collection of statewide and nationwide evidence for patient management and assessing the effectiveness of treatment pathways. The primary challenges are the complexity and inconsistency of structured clinical data streams and accurate extraction of this information from free-text clinical narratives. MATERIALS AND METHODS We proposed a hybrid two-phase information extraction framework that combined a Unified Medical Language System parser (phase-1) with a fine-tuned large language model (LLM; phase-2) to extract longitudinal treatment timelines from time-stamped clinical notes. Our framework was developed through end-to-end joint learning as a question-answering model, where the model was trained to simultaneously answer five questions, each corresponding to a specific treatment. RESULTS We fine-tuned and internally validated the model on 26,692 patients with breast cancer (diagnosed between 2013 and 2020) receiving treatment at Mayo Clinic and externally validated the model on 162 randomly selected patients from Stanford Healthcare. Zero-shot LLM (out-of-the-box) had high specificity but low sensitivity, indicating that although these frameworks are useful for generic language understanding, they are lacking in terms of targeted clinical tasks. The proposed model achieved 0.942 average AUROC on the internal and 0.924 on the external data, demonstrating only marginal drop in performance when evaluated on external. The proposed model also achieved better trade-off between sensitivity (average: 79.2%) and specificity (average: 76.2%) compared with rule-based (average sensitivity: 70.5%, average specificity: 68.1%) and structured codes (average sensitivity: 64.1%, average specificity: 83.5%). CONCLUSION The proposed framework can extract temporal information about cancer treatments from various time-stamped clinic notes, regardless of the setting of treatment administration (inpatient or outpatient) or time frame. To support the cancer research community for such data curation and longitudinal analysis, we have packaged the code as a docker image, which needs minimal system reconfiguration and shared with an open-source academic license.
Domain-specific large language model for predicting prostate cancer treatment plan.
Ghaffar, Umar , Tariq, Amara , Choudry, Mouneeb, Channar, Aneeta , Banerjee, Imon, Luo, Man , Abdul‐Muhsin, Haidar , Briggs, Logan , Riaz, Irbaz Bin

Journal of Clinical Oncology | February 18, 2025 | Volume: 43 | Issue: 5_suppl | Pages: 428-428

10.1200/jco.2025.43.5_suppl.428 Get It

428 Background: Prostate cancer management presents a significant healthcare burden, with the need to efficiently triage patients for treatment. Our objective is to leverage large language models to predict physician-recommended treatment plans from unstructured clinical notes. By accurately predicting treatment plans, we aim to risk stratify and triage patients effectively, thereby optimizing the allocation of physician resources. Methods: 448 unstructured initial urology consultation patient notes following first positive prostate cancer biopsy were identified. The recommended and final treatments received were manually annotated to establish ground truth labels (Table 1). The dataset was split 80:20 for training and testing, preprocessed to remove plan sections and formatted into question-answer (QA) format. A domain-specific large language model (LLM) inspired by GPT and a specialized tokenizer (PCa- LLM) for prostate cancer terminology were developed. QA models were built using the PCa-LLM and compared with those using GPT-2 as the backbone to predict recommended and final treatments. Results: For the physician-recommended treatment plans, our LLM (PCa-LLM) showed superior performance with higher AUROC scores for curative vs. non-curative treatments (0.78 vs. 0.65), chemo-hormonal vs. other non-curative treatments (0.89 vs. 0.65), and surveillance vs. all other treatments (0.72 vs. 0.70), while both models achieved the same high AUROC of 0.99 for chemo-hormonal vs. all other treatments. For final treatments, PCa-LLM demonstrated better AUROC for curative vs. non-curative treatments (0.77 vs. 0.74) and chemo-hormonal vs. other non-curative treatments (0.71 vs. 0.66), while GPT2 outperformed PCa-LLM for surveillance vs. all other treatments (0.78 vs. 0.70). Both models achieved an AUROC of 0.99 for chemo-hormonal vs. all other treatments. Conclusions: PCa-LLM accurately predicted most treatment categories better than GPT2, with higher AUROC scores, and can be utilized to triage prostate cancer patients using initial consultation notes. Task Physician -Recommended Treatment Plan Final Treatment Received Curative Prostatectomy/Radiation 228 230 Non-Curative Focal Therapy 22 15 Active Surveillance 40 45 Chemo-hormonal 30 30 Model Predictions (AUROC) GPT2 PCa-LLM GPT2 PCa-LLM Curative vs. non-curative 0.65 0.78 0.74 0.77 Chemohormonal vs. other non-curative 0.65 0.89 0.66 0.71 Chemohormonal vs. all other 0.99 0.99 0.99 0.99 Surveillance vs. other non-curative 0.64 0.60 0.67 0.59 Surveillance vs. all other 0.70 0.72 0.78 0.70
Abstract TP303: Identifying Risk factors for Major Adverse Cardiovascular Events (MACE) in Patients with Migraine: A Logistic Regression Analysis of Demographics, Comorbidities, and Brain Imaging Findings
Dumitrașcu, Oana , Tariq, Amara , Dumkrieger, Gina , Banerjee, Imon , Schwedt, Todd J. , Chong, Catherine D.

Stroke | January 30, 2025 | Volume: 56 | Issue: Suppl_1 | Pages: No page available

10.1161/str.56.suppl_1.tp303 Get It

Background: Prior studies indicate a relationship between migraine and MACE. Here we assess whether brain white matter hyperintensities (WMH), which are a common imaging finding in patient with migraine, contribute to the risk of MACE above demographics and common risk factors for MACE. Methods: 60,454 patients, ages 18-89, with a ICD-9 or ICD-10 migraine diagnosis code in 2010 or later were identified from the Mayo Clinic electronic health record. Only patients who were seen for migraine in the Neurology Department were included. Patients with a migraine diagnosis who did not have MACE were included only if they had at least two visits at Mayo Clinic during five years. Only patients with sex and race information were included. The final cohort included 577 migraine patients with and 598 migraine patients without MACE. Presence of WMH was determined from radiology notes. Individuals without a brain MRI were assumed not to have WMH. A logistic regression model that included sex, race, known lifetime MACE risk factors (atrial fibrillation, diabetes, hypertension, hyperlipidemia, tobacco use) and WMH as independent variables to predict MACE outcome was fit. Results: Significant factors that increased the risk of MACE in individuals with migraine included being Black or African American (adjusted OR: 2.9, 95% CI: 1.24-6.82, p = 0.014), presence of atrial fibrillation (adj. OR: 1.63, 95% CI: 1.23-2.17, p < 0.001), diabetes (adj. OR: 1.34, 95% CI: 1.02-1.75, p = 0.036), hypertension (adj. OR: 1.9, 95% CI: 1.39-2.6, p < 0.001), tobacco use (adj. OR: 1.66, 95% CI: 1.29-2.14, p < 0.001), and the presence of WMH (adj. OR: 1.43, 95% CI: 1.1-1.87, p = 0.008). Hyperlipidemia showed a marginal association (adj. OR: 1.34, 95% CI: 0.99-1.81, p = 0.061), while other variables such as sex and other racial/ethnic groups did not significantly alter the risk of MACE outcome. Discussion: Results indicate that African American race and presence of WMH in addition to common comorbidities independently increase the risk of MACE outcome.
Abstract TP279: Predictive Modeling of Major Adverse Cardiovascular Events (MACE) in Patients with Migraine: Differential Performance for Ischemic and Hemorrhagic Stroke Outcomes
Tariq, Amara , Dumitrascu, Oana M. , Dumkrieger, Gina , Schwedt, Todd J. , Chong, Catherine D. , Banerjee, Imon

Stroke | January 30, 2025 | Volume: 56 | Issue: Suppl_1 | Pages: No page available

10.1161/str.56.suppl_1.tp279 Get It

Introduction: Prior data suggest that migraine increases the risk of stroke. However, there is a lack of understanding whether specific migraine features like white matter hyperintensities (WMH) commonly found on brain magnetic resonance (MR) imaging in migraine patients and migraine medications might contribute to Major Adverse Cardiovascular Event (MACE) outcomes including ischemic and hemorrhagic stroke. We assess MACE risk estimation model stratified by event types using Mayo Clinic Electronic Health Record (EHR) data. Methods: Case and control sets, based on MACE occurrence among migraine patients at Mayo Clinic Neurology Department, were propensity matched on age, sex, and MACE risk-factors (atrial fibrillation, diabetes, hyperlipidemia, hypertension, tobacco use) to capture migraine-specific predictors ( Figure 1) . Migraine medications were categorized into 9 classes; Triptans, Ditans, Gepants, Ergots, calcitonin gen-related peptide targeting medications (CGRPs), Beta-blockers, Topiramate, Tricyclic antidepressants, serotonin-norepinephrine reuptake inhibitors (SNRIs). Demographics (age and sex), migraine characteristics (chronic migraine, migraine with aura), and presence of WMH on MR imaging were curated. To model non-linear relationship between predictors, two comparative Random Forest (RF) models were evaluated for MACE prediction; i) Model-1: using demographics, migraine characteristics and WMH, ii) Model-2: medications, demographics, migraine characteristics and WMH ( Table 1) . Results: Model-2 outperformed Model-1 indicating combined interaction between medications, WMH, and migraine characteristics for estimating MACE risk. Model-2 achieved AUC of 0.68 for overall MACE, but showed higher performance for ischemic stroke (AUC 0.76). We visualized the effects of input features on ischemic stroke risk for four individual patients using SHAP force plots ( Figure 2 ). The model often considered use of betablockers, chronic migraine, and presence of WMH as factors for increasing ischemic stroke risk. Discussion: Our experiments show that medications, migraine features, WMH and demographics are more effective estimators for ischemic risk stroke risk compared to overall MACE risk, indicating stronger predictive correlation between ischemic stroke and migraine related clinical features. Interestingly, the model inferred the clinical practice pattern of not prescribing Triptans (TRIPTAN=0) to the patients with high risk of stroke from the data itself.
Multimodal artificial intelligence models for radiology
Tariq, Amara , Banerjee, Imon , Gichoya, Judy Wawira , Gichoya, Judy W. , Banerjee, Imon , Trivedi, Hari

BJR|Artificial Intelligence | January 17, 2025 | Volume: 2 | Issue: 1 | Pages: No page available

10.1093/bjrai/ubae017 Get It

Abstract Artificial intelligence (AI) models in medicine often fall short in real-world deployment due to inability to incorporate multiple data modalities in their decision-making process as clinicians do. Clinicians integrate evidence and signals from multiple data sources like radiology images, patient clinical status as recorded in electronic health records, consultations from fellow providers, and even subtle clues using the appearance of a patient, when making decisions about diagnosis or treatment. To bridge this gap, significant research effort has focused on building fusion models capable of harnessing multi-modal data for advanced decision making. We present a broad overview of the landscape of research in multimodal AI for radiology covering a wide variety of approaches from traditional fusion modelling to modern vision-language models. We provide analysis of comparative merits and drawbacks of each approach to assist future research and highlight ethical consideration in developing multimodal AI. In practice, the quality and quantity of available training data, availability of computational resources, and clinical application dictates which fusion method may be most suitable.