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Arribas, Mariano

https://orcid.org/0000-0003-1859-7098

Mayo Clinic

Mayo Clinic

Citations 20

Real-world comparison of progression-free survival and time to next therapy in 761 patients with newly diagnosed multiple myeloma
Mian, Hira , Arribas, Mariano , Fonseca, Rafael, Mutterback, Erin , Shahid, Omar , Gouda, Rohan , Pond, Gregory R. , Visram, Alissa , Fonseca, Rafaël , Fonseca, Rafael , Pond, Gregory Russell , Mian, Hira , Visram, Alissa , Shahid, Omar

Blood Advances | December 18, 2025 | Volume: 10 | Issue: 4 | Pages: 1405-1408

10.1182/bloodadvances.2025018655 Get It

Comparative analysis of next generation flow (NGF) and next generation sequencing based clonoseq for MRD detection in multiple myeloma using paired bone marrow samples
Wiedmeier, Julia E. , Arribas, Mariano , Aguirre, J.F., Kelemen, Katalin, Yadav, Udit , Chhabra, Saurabh, Wiedmeier-Nutor, Julia E , Franke, Karl , Bergsagel, P. Leif , Fonseca, Rafaël

Blood | December 5, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 4020-4020

10.1182/blood-2025-4020 Get It

Abstract Background: Minimal residual disease (MRD) is a critical prognostic and therapeutic response marker in multiple myeloma (MM). Two main technologies are used for MRD assessment in bone marrow: next-generation flow cytometry (NGF) and next-generation sequencing (NGS), from clonoSEQ. While both methods are FDA-cleared and clinically relevant, they differ in sensitivity, sample handling requirements, and technical differences. Comparative performance in real-world matched samples is understudied. Here we compared the detection rates and concordance between MRD by NGF (flow cytometry) and NGS-based clonoSEQ, using paired bone marrow aspirates collected at the same clinical timepoint. Methods We identified 246 paired bone marrow samples from MM patients, which were evaluated by both flow cytometry (Euroflow, typically sensitivity of 10-5) and clonoSEQ (sensitivity of up to 10-6) on the same collection date.MRD-negativity for clonoSEQ was defined as no detectable clones and below the assay's level of detection (LoD). Continuous variables (clonoSEQ and flow CPS) were analyzed using the Mann-Whitney U test. Categorical variables were assessed using chi-square tests with Yates continuity correction for 2x2. A cox proportional hazards model was used to evaluate the association between overall survival and cytogenetic abnormalities, MRD status, and other clinical covariates including age, sex, treatment type, and disease setting (newly diagnosed, relapsed/refractory). A p-value < 0.05 was considered significant. Results Out of 246 paired bone marrow samples, we identified 173 concordant samples, out of which 26 were concordant positive (clonoSEQ+/NGF+), 147 were concordant negative (clonoSEQ-/NGF-), and 73 were discordant (clonoSEQ+/NGF-). clonoSEQ detected MRD in all cases missed by NGF, including some with relatively high tumor burden, reflecting its higher sensitivity. Among discordant samples, 45 (61.6%) were following treatment of newly diagnosed MM (NDMM) and 28 (38.4%) treatment of relapsed/refractory (RRMM). Among the MRD-positive samples, the concordant group (n=26) showed a mean clonoSEQ count of 11923.5 cells per million (CPM) and a mean NGF CPM of 305.5 (p<0.01). In contrast, the 73 discordant samples had a lower mean clonoSEQ CPM of 156.1. For the 147 MRD-negative samples with concordant results, no residual disease was detected by either assay (CPM = 0 for both). When evaluating sex, race, ethnicity, chromosomal abnormalities, prior treatments to sample collection (immunomodulatory drugs, proteasome inhibitors, CD38 antibodies, CAR Ts/bispecific antibodies), and disease stage (NDMM, RRMM, untreated), patients with t(11;14) were significantly higher in the discordant group (17.9% concordant vs. 32.9% discordant; p = 0.016), while CAR T/bispecific antibody-treated patients were more likely concordant for the tests (27.2% concordant vs. 4.1% discordant; p<0.01). High-risk cytogenetics (t(4;14), t(14;16), gain 1q) were associated with worse survival (HR 6.22, 95% CI 2.02 – 19.2; HR 16.2, 95% CI 3.38-77.1; HR 4.0, 95% CI 1.28 – 12.5, respectively). Discordant MRD status did not impact survival, though only 13/246 patients were deceased (median follow-up approximately 50.6 months).Conclusion: ClonoSEQ demonstrates higher sensitivity compared to NGF for MRD detection in MM, identifying residual disease missed by NGF particularly in t(11;14) cases. Discordance did not affect survival, however, only 13 patients were deceased at the time of last follow up, suggesting longer follow up is needed.
Prognostic value of immunoparesis, lymphopenia, high serum ferritin, and suppression of the non-involved serum free light chains (niFLC) in relapsed and refractory multiple myeloma patients (RRMM) receiving bispecific antibodies
Castro, Valentina Cardenas , Arribas, Mariano , Wilson-Miller, Justine L., Nedved, Adrienne, Barreto, Jason N. , Abdallah, Nadine , Warsame, Rahma , Kourelis, Taxiarchis , Hayman, Suzanne R. , Kapoor, Prashant , Yadav, Udit , Wiedmeier, Julia E. , Kumar, Shaji , Lin, Yi, Sandahl, Tyler B. , Wiedmeier-Nutor, Julia E , Shim, Kevin G. , Siddiqui, Mustaqeem , Cook, Joselle , Dingli, David , Gonsalves, Wilson I. , Gertz, Morie A. , Leung, Nelson , Bergsagel, P. Leif , Chhabra, Saurabh , Ailawadhi, Sikander , Parrondo, Ricardo D , Rajkumar, S. Vincent , Dispenzieri, Angela , Fonseca, Rafaël

Blood | December 5, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 5772-5772

10.1182/blood-2025-5772 Get It

Abstract Background The advent of T-cell redirecting bispecific antibodies (BsAb) therapies has led to deeper and durable responses in patients with RRMM. We sought to identify adverse prognostic factors for patients treated with BsAbs. We also explored whether the extent of the non-involved free light chain (niFLC) suppression could serve as a potential marker of T-cell engager activity, given the binding of BsAbs to both clonal and non-clonal plasma cells and the short half-life of serum FLCs. Methods We conducted a retrospective analysis of RRMM patients treated with BsAbs between 2022 and 2025 at Mayo Clinic. Baseline lymphocyte counts and ferritin levels were collected and analyzed both as continuous and dichotomized variables. niFLC was considered undetectable if it was below the quantification limit, while the magnitude of niFLC suppression was defined as the absolute difference between niFLC levels and the lower normal range threshold at the time of best response. In addition to standard statistical methods, interaction models were used to explore the potential effect modification of niFLC dynamics. Results A total of 158 patients were included (teclistamab, 73%; talquetamab, 15%; elranatamab, 12%). The median follow-up is 12 months (range 0 to 28 months). Median age is 71(range 65 to 77); 52% (n=85) were triple-class refractory (refractory to an IMiD, a PI, and CD38-antibody) and 37% (n=60) were penta-refractory. CAR-T therapy was previously administered in 28% (n = 46) patients, and 70% had undergone an autologous stem cell transplant. One or more high risk cytogenetic features including del(17p), gain(1q), amp(1q), del(1p), t(4;14), and t(14;16) were present in 57% (n = 90) of patients. Extramedullary disease was noted at the time of BsAb therapy in 44% of patients. Utilizing IMWG response criteria, 68% (n=107) achieved ≥partial response, and 64% (n=101) had ≥ very good partial response (VGPR) as best response following BsAb treatment. The median time to best response was 1.6 months (range 0.7 to 4.4). On multivariable analyses, baseline immunoparesis (HR 1.96; 95% CI, 1.08–3.58; p = 0.0274) and elevated ferritin levels (≥ 337 ng/mL) (HR 1.96; 95% CI, 1.24–3.09; p = 0.0041) were independent predictors of inferior progression-free survival (PFS). Lower baseline absolute lymphocyte count, analyzed as a continuous variable, was significantly associated with shorter PFS in the univariable analysis (HR 0.66; 95% CI, 0.44–0.98; p = 0.04), but not in the multivariable model (HR 0.75; 95% CI, 0.5–1.13; p = 0.166). Detectable niFLC at the time of best response was also significantly associated with inferior PFS (HR 1.80; 95% CI, 1.14–2.84; p = 0.0114). However, the magnitude of niFLC suppression did not show a statistically significant impact on PFS. The median PFS was 5 months in patients with high ferritin levels (≥ 337 ng/mL) and 21 months in those with lower ferritin (p = < 0.005). Similarly, PFS was 8 months in those with immunoparesis and not reached in those without baseline immunoparesis (p = 0.008). At the time of best response, detectable niFLC was associated with a trend toward shorter PFS (5 vs. 13 months), although the difference was not significant (p = 0.06). Logistic regression analysis supported these findings, with higher ferritin levels (OR 2.28; 95% CI: 1.09–4.96; p = 0.032) and the presence of baseline immunoparesis (OR 2.60; 95% CI: 1.18–6; p = 0.02) being significantly associated with higher likelihood of progression or death. Patients with deep reduction in niFLC achieved a VGPR or better. In contrast, those with detectable or higher-than-normal niFLC levels did worse in terms of response. Notably, niFLC became undetectable in 72% of patients with ≥VGPR (73/101), compared to 52% of those who did not achieve this level of response (30/57). Conclusion Among RRMM patients treated with BsAbs, baseline immunoparesis and elevated ferritin levels emerged as independent predictors of worse PFS. While failure to induce a deep reduction in niFLC at the time of best response suggests a tumor extrinsic mechanism of resistance, and it is also linked to inferior outcomes.
Tumor intrinsic mechanisms leading to cevostamab resistance in multiple myeloma
Campos, Cecília Bonolo de , Verbruggen, Christina , Abelman, Dor , Nerreter, Silvia , Lehmann, Johanna , Arribas, Mariano , Bruins, Laura A., Bruce, Jeffrey N. , Li, Zhihua , Abdulsalam, Safa, Ahmann, Gregory , Kumar, Shaji , Fonseca, Rafael, Rasche, Leo , Stewart, Keith, Trudel, Suzanne , Munawar, Umair , Scott, David S. , Han, Seungbin , Masih‐Khan, Esther , Wang, Ding , Abdulsalam, Safa, Braggio, Esteban , Pugh, Trevor J. , Fonseca, Rafael, Einsele, Hermann , Waldschmidt, Johannes M , Kortüm, K. Martin

Blood | December 4, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 2178-2178

10.1182/blood-2025-2178 Get It

Abstract In this study, we investigated tumor intrinsic mechanisms of resistance to cevostamab, a bispecific T-cell engager targeting Fc receptor-like protein 5 (FCRL5) and CD3 that has shown promising clinical activity and durable responses in advanced MM. Longitudinal bone marrow aspirates from nine MM patients treated with cevostamab were analyzed. All patients had previously been treated with both immunomodulatory drugs (IMiDs) and proteasome inhibitors (PI) and eight patients had received daratumumab prior to cevostamab, which was, on average, the 6th line of treatment (mean treatment duration 220±273 days). Five of nine patients responded with ≥PR. Whole genome and transcriptome sequencing was performed on sorted CD138+ MM cells at baseline, and whole exome and transcriptome sequencing was performed on five and three samples, respectively, following cevostamab discontinuation. Baseline FCRL5 expression levels did not correlate with clinical response. However, in one non-responder patient, FCRL5 expression increased four-fold after 28 days of treatment. Given the location of the FCRL5 gene on chromosome 1q—commonly amplified in advanced MM—we evaluated the presence of Gain(1q) in our study cohort. All patients whose best response was ≤PR (n=6) harbored a Gain(1q), whereas it was absent in those who achieved VGPR and sCR (n=3). Crucially, one of the patients that achieved sCR was initially treated with 60 mg of cevostamab for one year and then escalated to a higher dose cohort (90 mg) in the second year. At progression, a clonal FCRL5E115A missense mutation (allelic frequency = 56%) and a subclonal FCRL5G455Efs*19(allelic frequency = 5%) frameshift deletion mutation were detected, both absent at baseline. The missense mutation was located on the extracellular domain of FCRL5 targeted by cevostamab. To validate the functional impact of FCRL5E115Aand FCRL5G455Efs*19 on the sensitivity to cevostamab in vitro, we generated a FCRL5 knockout (KO) model utilizing CRISPR-Cas9 technology in OPM2 MM cells. In vitro cevostamab cytotoxicity assay with PBMCs and pan T cells from healthy donors at various effector to target (E:T) ratios confirmed a complete loss of cevostamab sensitivity in our FCRL5KO models. cDNA encoding patient-derived FCRL5 alterations (FCRL5E115Aand FCRL5G455Efs*19) as well as FCRL5wtwere cloned into mammalian expression vector and reintroduced into FCRL5KO cells. Cevostamab sensitivity was reinstated by FCRL5wt expression in KO cells. In contrast, FCRL5E115A conferred complete resistance to cevostamab (p<0,001) and FCRL5G455Efs*19 depicted a significant decline in cevostamab sensitivity relative to FCRL5wt expressing models. Additional experiment utilizing direct stochastic optical reconstruction microscopy (dSTORM) are ongoing to monitor the membrane localization of FCRL5 mutants. By integrating genomic, transcriptomic and functional data with clinical outcomes, this work is the first to report on acquired FCRL5 mutations causing resistance to cevostamab. We hypothesize that the prolonged treatment duration may have contributed to the acquisition of the target mutations and note a subsequent durable sCR response to BCMA-targeted immunotherapy in the same patient, suggesting immune-related factors such as T cell exhaustion, were not drivers of cevostamab resistance. Due to the limited sample size, these findings require validation in larger cohorts. Nonetheless, our findings begin to elucidate tumor intrinsic mechanisms associated with cevostamab resistance.
Real world test characteristics of mass spectrometry monoclonal protein monitoring in multiple myeloma
Arribas, Mariano , Cely, Fabio Samir Vargas, Yadav, Udit , Wiedmeier, Julia E. , Punwani, Nathan , Alatorre, Gabriela, Best, Sharene, Kelemen, Katalin, Chhabra, Saurabh, Bergsagel, P. Leif , Murray, David , Wiedmeier-Nutor, Julia E , Shim, Kevin G. , Cely, Fabio Samir Vargas, Best, Sharene, Bergsagel, P. Leif , Fonseca, Rafaël

Blood | December 4, 2025 | Volume: 146 | Issue: Supplement 1 | Pages: 2201-2201

10.1182/blood-2025-2201 Get It

Abstract Introduction Matrix assisted laser desorption ionization time of flight mass spectrometry (MALDI-TOF MS, mass fix) represents a sensitive and specific alternative to electrophoresis and immunofixation for quantifying monoclonal antibodies in patients with multiple myeloma (MM). Here we report real world data utilizing mass fix and compare its test characteristics to a gold standard of minimal residual disease (MRD) quantification utilizing next generation sequencing (NGS). Results All patients who had obtained mass fix and MRD testing by NGS as part of routine clinical care at Mayo Clinic Arizona were screened for this study. In total, 343 pairs of mass fix and NGS testing within 50 days of each other representing 269 unique patients with secretory multiple myeloma were included. Cases of IgD myeloma and those secreting only free light chains were excluded. The threshold of MRD negativity was set at <1x10-6(less than one malignant cell in one million) and was assessed utilizing the clonoSEQ NGS assay. The median age of our cohort is 67, it is 44% female, and primarily Caucasian (88%) with a median follow-up of 7.3 months from testing date. FISH testing was performed in 96% of patients and at least one high risk cytogenetic abnormality (t(4;14), t(14;16), del(17p)) was found in 23% of patients. The t(11;14) translocation was found in 18%, +1q in 26%, and amp(1q) in 6% of evaluated patients. Notably, patients at all stages of treatment or disease status were included in our study. Induction treatment for newly diagnosed MM (NDMM, 133 patients) was mostly daratumumab-containing quadruplet (63%) or triplet drug regimens (36%). Autologous stem cell transplant (ASCT) was performed in 79% of NDMM and 80% of relapsed refractory MM patients (RRMM, 138 patients). Of the RRMM patients, 94% were triple class exposed and 41% were penta-exposed. Overall agreement between NGS and mass fix results was 65% (Kappa statistic: 0.31, 95% CI: 0.22 – 0.41). Most discordant cases were instances of mass fix negativity and NGS positivity (n = 89, 26% of all testing pairs). Only 7% of cases (n= 30) represented mass fix positivity with NGS negativity. Mass fix was able to define therapeutic monoclonal antibody by its unique mass spectrometric profile in 38 of the total test pairs that otherwise would have been considered disease associated. Of the 30 patients testing mass fix positive and NGS negative, 25 (83%) represent post-treatment evaluations. Thus, ongoing mass fix positivity represents monoclonal protein washout kinetics. All of these cases are noted to have declining mass fix levels at last follow up and 40% had undetectable monoclonal protein. The discordant mass fix negative and NGS positive cases were evenly distributed across NDMM and RRMM representing 32% and 20% of test pairs in each group, respectively. Amongst these 89 total test pairs, the median abundance of malignant clone by NGS was 10 cells per million (range 0.06 to 297,895). This is in contrast to 136 concordantly positive test pairs where the median was 2960 cells per million (range 0.353 to 1,017,360). The median monoclonal protein identified (in those with a quantifiable M-spike) was 0.30 g/dL. Receiver operating characteristic curves using NGS as gold standard found the optimal mass fix threshold to be 0.010g/dL (specificity 95%, sensitivity 51%) for NDMM patients and 0.046g/dL (specificity 84%, sensitivity 55%) in RRMM patients. Conclusions Development of a MRD assay based on peripheral blood sampling could greatly improve the ease and speed of obtaining these assessments. Our experience highlights both the great potential and need to identify appropriate clinical contexts for optimal use of mass fix MRD assessment. A significant limitation of our data is that low level monoclonal proteins without a previous reference above a threshold of 20mg/dL are not reported as positive and may account for a significant fraction of discordant cases reported here. All clonoSEQ NGS samples are referenced to a positive control greatly increasing specificity. The currently reported dataset is biased against mass fix as not all test pairs reported are known to have a positive reference. Further delineation of these cases is forthcoming. Previous reports have also noted that mass fix test characteristics can improve with time from treatment which will be assessed with future follow-up.
NGS-based monitoring of secondary acute lymphoblastic leukemia dynamics following lenalidomide maintenance in multiple myeloma patients
Calvillo, C. Daniel , Castro, Valentina Cardenas , Arribas, Mariano , Cardenas Castro, Valentina, Arana Yi, Cecilia , Shim, Kevin G. , Kirsch, Ilan R. , Fonseca, Rafaël , Yi, Cecilia Arana

Leukemia & Lymphoma | November 19, 2025 | Volume: 67 | Issue: 2 | Pages: 342-348

10.1080/10428194.2025.2586084 Get It

Abstract 4537: Dynamics of B-cell repertoires following CAR-T and bispecific antibody therapy in multiple myeloma
Jacob, Feba Miriam, Hentz, Joseph G. , Wonnaparhown, Alex , Wiedmeier, Julia E. , Arribas, Mariano , Alatorre, Gabriela, Best, Sharene, Poulignot, Jayden, Yadav, Udit, Bergsagel, P. Leif , Wiedmeier-Nutor, Julia E , Jacob, Feba Miriam, Garza-Morales, Rodolfo , Best, Sharene, Yadav, Udit , Chhabra, Saurabh , Bergsagel, P. Leif , Fonseca, Rafaël , Hilal, Talal

Cancer Research | April 21, 2025 | Volume: 85 | Issue: 8_Supplement_1 | Pages: 4537-4537

10.1158/1538-7445.am2025-4537 Get It

Abstract Introduction: Multiple myeloma (MM) is a B-cell-derived malignancy associated with immune dysregulation. Anti-CD38 monoclonal antibodies (mAbs) therapies have shown improved outcomes in patients with MM. Silbermann et al. showed that anti-CD38 mAb-containing therapies lead to profound hypogammaglobulinemia and reduction in Ig gene repertoire. The effect of modern therapies such as CAR-T and bispecific antibodies (BsAbs) on B-cell repertoire has not been well described. In this study, we sought to investigate the effect of these therapies on B-cell repertoire in patients with MM. Methods: This is a single-institution retrospective observational study evaluating MM patients treated with anti-BCMA CAR-T and BsAbs. Baseline characteristics, laboratory data, treatment history, were extracted from medical records. Total unique sequences (TUS) and total sequences of IgH, IgK, and IgL were identified and quantified using clonoSEQ. Patients were classified in two groups: CAR-T and BsAbs. The primary objectives were (1) characterize changes in TUS and total sequences within IgH, IgK, and IgL before and after treatment, and (2) examine how the sequences evolve over time following CAR-T. Results: 76 MM patients received CAR-T or BsAbs. Among those, 22 CAR-T and 5 BsAbs patients had pre- and post-treatment sequences available. Median age at initiation of treatment was 66 years in the CAR-T group (42-81 y) and 65 years in the BsAbs group (48-71 y). Based on mSMART v3 criteria, 72% of CAR-T and 60% of BsAbs recipients were classified as high-risk. Median number of prior lines of therapy was 5 (2-8) in the CAR-T group and 6 (5-13) in the BsAbs group.CAR-T recipients were classified into early (<40 days) and late (>40 days), based on when the post-CAR-T treatment clonoSEQ assay was performed. Changes in TUS and total sequences of IgH, IgK, and IgL were calculated, and the averages were assessed independently. The mean early and late change in total unique IgH sequences were (-75, 586 and 131, 038, p=0.052), unique IgK (-57, 797 and 52, 586, p=0.020), and unique IgL (-22, 354 and 25, 056, p=0.011). A subgroup of 8 patients with sequential MRD reports post-CAR-T therapy were identified, six patients showed improvement in B-cell sequence dynamics and two patients showed a decrease over time. For patients who received BsAbs, results indicated a similar pattern, with an early decrease in B-cell repertoires, characterized by reductions in sequence diversity and quantity. Conclusions: Our analysis of B-cell repertoires following CAR-T revealed changes before and after treatment. Patients receiving CAR-T therapy showed a decline in the number of TUS and total sequences of IgH, IgK, and IgL, likely due to the lymphodepletion regimen, followed by a gradual restoration reflecting immune recovery. Longer follow-up and a larger cohort will be necessary to assess the implications of these B-cell repertoire changes on patient outcomes. Citation Format: Feba Miriam Jacob, Rodolfo Garza-Morales, Joseph G Hentz, Alex Wonnaparhown, Julia E. Wiedmeier-Nutor, Mariano Arribas, Gabriela Alatorre, Sharene Best, Jayden Poulignot, Udit Yadav, Saurabh Chhabra, P. Leif Bergsagel, Rafael Fonseca, Talal Hilal. Dynamics of B-cell repertoires following CAR-T and bispecific antibody therapy in multiple myeloma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2025; Part 1 (Regular Abstracts); 2025 Apr 25-30; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2025;85(8_Suppl_1):Abstract nr 4537.
A Proteogenomic Approach to Identify Potential Drivers of Hyperdiploid Multiple Myeloma
Wiedmeier, Julia E. , Dasari, Surendra , Manalaparthi, Kiran, Bruins, Laura A., Ahmann, Gregory , Arribas, Mariano , Wiedmeier-Nutor, Julia E , Kandasamy, Richard K. , Bergsagel, P. Leif , Pandey, Akhilesh , Braggio, Esteban , Fonseca, Rafaël

Blood | December 6, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 3269-3269

10.1182/blood-2024-206239 Get It

Introduction The major primary genetic events in multiple myeloma (MM) include translocations of immunoglobulin heavy chain (IgH) and a hyperdiploidy (HRD) karyotype (Kuehl, 2002). The main drivers of pathogenesis in HRD MM are unknown (Fonseca, 2003), therefore further research is needed in this subgroup. Translational research in HRD MM has relied on analysis of genomic and transcriptomic alterations, however changes at the genome and transcriptome level do not always correlate directionally with protein abundance. Because proteins are considered the main and final effectors of most cellular processes, proteogenomics can improve our understanding of the drivers of HRD MM. We employed it here to identify potential biomarkers in HRD MM and determine whether any given trisomy may lead to a selective advantage. Methods: Protein and mRNA were extracted from CD138+ cells from 47 HRD MM and 14 t(11;14) MM samples. RNA-seq data was processed using MAPR-Seq pipeline using default parameters and gene-wise raw counts were extracted for each sample. Proteomics data was processed using Specranaut and protein-wise intensities were extracted for each sample. A generalized linear model configured with negative binomial distribution was used to analyze gene-wise count data in edgeR software. Genes with an adjusted p-value of <=0.05 were considered significantly differentially expressed. Protein intensity data were normalized using trimmed mean of M-values and log2 transformed. A generalized linear model configured with Gaussian distribution was used to compare protein intensities between the groups. Proteins with an adjusted p-value <= 0.05 were considered significantly differentially expressed. Two separate rank lists for protein and mRNA data were generated for pathway analysis. Results When comparing our small cohort of HRD MM patient samples to those with t(11;14) MM, out of approximately 16,600 total transcripts and 9,700 proteins evaluated we identified approximately 2,100 significantly variant transcripts and 500 significantly variant proteins in HRD MM. GSEA pathway analysis of the transcriptome and proteome revealed significantly upregulated translational and ribosomal processing pathways in HRD MM. Transcriptional MYC target pathways were also significantly upregulated. RNAseq revealed significantly higher expression of MYC (Rank 24.5, p=5.3E-6) in HRD MM. It is known that patients with t(11;14) MM have increased expression of CCND1 (Kuehl and Bergsagel, 2012). As expected, we found that the HRD MM subgroup had significantly lower expression of CCND1 compared to the t(11;14) MM subgroup (Rank -79.9, p=2.8E-21) and this was also true at the protein level (Rank -21.7, p=2.2E-5). The most significantly abundant protein in the HRD MM subgroup compared to t(11;14) MM was BAHD1, which is a protein that targets H3K27me3 and recruits transcriptional co-repressors (Fan, 2020). BAHD1 has been shown to repress erythroid genes and may recruit HDAC5, which plays a role in osteoblast differentiation (Rank 72.3, p=2.9E-20; Xu, 2021). The second most abundant protein in HRD MM was CKS2, which binds to the catalytic subunit of cyclin-dependent kinases (CDKs) and therefore positively regulates cell proliferation, invasion, and migration and has been shown to be implicated in tumor progression in several solid tumors (Rank 72.3, p=2.9E-20; You, 2015). TRIM proteins promote tumorigenesis and cancer development. TRIM14 mediates cancer development through mediating the JAK/STAT, PI3K/AKT, NFkB, and p53 pathways and was found to be significantly higher in HRD MM (Rank 70.6, p=9.0E-20; Huang, 2022). We also found increased protein abundance of LAMP5 in HRD MM (Rank 20.1, p=6.0E-5). LAMP5 may play an important role in MM progression and has been shown to be highly expressed in patients with mixed-lineage leukemia and is associated with a poor prognosis (Wang, 2023; Gracia-Maldonado, 2022). We identified many proteins (not all discussed here) that have not been well described in HRD MM and thus may be biomarkers/targets of disease pathogenesis of this subgroup. Conclusion Proteins are the final effectors of most cellular processes. Proteogenomics can improve our understanding of the drivers of HRD MM. Using a proteogenomic approach we identified proteins that may lead to selective advantage and/or pathogenesis of trisomies in HRD MM.
Pre-Infusion Ferritin: A Predictive Biomarker for CAR T-Cell Therapy Response in Multiple Myeloma
Moreno, Eider, Arribas, Mariano , Aguirre, J.F., Patel, Rohan S, Yadav, Udit , Wiedmeier-Nutor, Erin J, Bergsagel, Leif, Castro, Januario E. , Castro, Januario E , Moreno, Eider, Martinez, David A., Patel, Rohan S, Bergsagel, P. Leif , Fonseca, Rafaël , Chhabra, Saurabh

Blood | December 5, 2024 | Volume: 144 | Issue: Supplement 1 | Pages: 7096-7096

10.1182/blood-2024-211376 Get It

Background Clinical biomarkers are essential for optimizing CAR T-cell therapy in multiple myeloma (MM). Clinicians can anticipate patient responses by evaluating predictive biomarkers, particularly earlier during treatment, tailoring treatments to enhance efficacy and survival outcomes. Ferritin, a general inflammation marker, appears to be a promising predictor of clinical outcome in MM patients receiving therapy with CAR T-cells. Our goal was to evaluate this and other biomarkers in this patient population. Methods We retrospectively analyzed MM-patients treated with idecabtagene vicleucel (ide-cel) and ciltacabtagene autoleucel (cilta-cel) at Mayo Clinic Arizona between September/2019 and November/2023. We evaluated the demographic characteristics, pre-infusion bone marrow samples, adverse events, mortality, and clinical response after CAR T-cell therapy infusion, and clinical laboratory data were interpreted using reference limits established by Mayo Clinic laboratories. Statistical calculations using parametric tests were performed, and survival curves were estimated using the Kaplan-Meier analysis and compared statistically using the log-rank test and Pearson's correlation. Results Forty patients with MM received CAR T cells, and 23 and 17 patients received cilta-cel and Ide-cel, respectively. The median age was 64 years [IQR 40-80], and 62.5% were male. All patients received inpatient CAR T-cell infusions; the median vein-to-vein was 54 days (IQR: 39-109), and the median length of hospital stay was ten days (IQR: 7-25). Cytokine release syndrome (CRS) was observed in 90% of patients (3% grade ≥3), while immune effector cell-associated neurotoxicity syndrome (ICANS) was observed in 23% of patients (3% grade ≥3). At day 90, the overall response rate (ORR) was 87.5%, with 21 patients (52.5%) having a complete response (CR), 9 (22.5%) with a very good partial response (VGPR), 5 (12.5%) had a partial response (PR), 1 (2.5%) had stable disease (SD), and 4 (10%) had progressive disease (PD). 35 patients was evaluated for minimal residual assessment (MRD) using flow cytometry cut-off 10-5. Of the total population eligible (PR, VGPR, and CR) for MRD evaluation, 97% were MRD negative. The median progression-free survival (PFS) was 13.5 months on ide-cel and has not been reached on cilta-cel. The mortality rate was 23.5% Ide-cel vs 8.6% with cilta-cel. In terms of PFS, we did not find any association with age, disease risk, number of previous lines of therapy, time from last treatment to CAR T-cell infusion, absolute lymphocyte counts at leukapheresis, % of plasma cells in bone marrow pre-infusion, vein-to-vein time, use of tocilizumab, or steroids for CRS/ICANS management. However, univariate analyses showed that a ferritin level <337 mcg/L at baseline pre-CAR T-cell infusion strongly correlated independently with improved PFS (median non-reached) compared with patients with ferritin levels >337 mcg/L that had a PFS of 13.50 months HR 0.2 (95% CI 0.07 - 0.83); p=0.0245. In addition, ferritin levels <337 mcg/L pre-infusion correlated with improved overall survival (OS) (median non-reached) compared with 22.23 months in patients with higher ferritin levels HR 0.2 (95% CI 0.02 - 0.53), p=0.0069. Conclusions In conclusion, our analysis shows that ferritin levels pre-CAR T-cell infusion are independent predictive biomarkers of PFS and OS in MM-patients regardless of the CAR T-cell product received. Our cohort of MM-patients treated with the two FDA-approved CAR T-cell products showed the expected PFS, OS, and adverse events. Moreover, our results showed no significant association between clinical response and age, risk stratification, number of previous therapy lines, or other evaluated factors with disease progression. Future prospective studies will help to validate these findings and explore the mechanisms associated with high ferritin levels and their potential implications in the heightened immune-activation state in patients that express high ferritin levels and their correlation with CAR T-cell efficacy.
Beyond the Primary: Unveiling the Prognostic Value of Secondary Cytogenetic Abnormalities in Multiple Myeloma
Arribas, Mariano , Ahmann, Gregory , Castro, Janna C. , Wiedmeier-Nutor, Erin E, Fonseca, Rodrigo , Wiedmeier-Nutor, Erin E, Baughn, Linda B. , Bergsagel, P. Leif , Fonseca, Rafaël

Blood | December 1, 2023 | Volume: 142 | Issue: Supplement 1 | Pages: 2000-2000

10.1182/blood-2023-190701 Get It

Introduction Fluorescent In-Situ Hybridization (FISH) has been an indispensable tool to characterize the cytogenetic landscape of multiple myeloma (MM), mainly for identifying primary abnormalities such as heavy chain gene (IgH) translocations and odd-number chromosome trisomies. These aberrations play a crucial role in risk stratifying the disease given their correlation with disease aggressiveness, treatment response and overall prognosis. High-risk (HR) cytogenetics are identified through the presence of t(14;16), t(14;20) or loss of the p53 gene locus. Less is known about the prognostic implication of secondary abnormalities, in particular gain of 1q21. We aimed to evaluate the association between primary and secondary cytogenetic abnormalities and their impact on overall survival (OS) in MM patients. Methods We performed a retrospective analysis on a FISH records database from three Mayo Clinic campuses. Cohort included patients >18 years of age, diagnosed with multiple myeloma between 2005 and 2022, with FISH performed within two years of diagnosis. Demographics including age, date of diagnoses and OS data were retrieved from electronic medical records. Statistical analyses were done using BlueSky Statistics software. Study was conducted in accordance with the principles of the Declaration of Helsinki; informed consent was obtained from all participants. Results We analyzed a total of 2221 patients, among which 59.8% were male, with a median age of diagnosis 65 years. Hyperdiploidy was the most prevalent primary cytogenetic abnormality observed in 44.3% of patients, followed by t(11;14) as the most common translocation (23%), and t(4;14) (8.2%). Gain(1q21) was assessed in 925 patients, among which 64%, 30.3% and 5.7% had 2, 3 and ≥4 copies respectively. Furthermore, 11.4% (n=253) exhibited either mutated TP53 or del17p, and 37.8% (n=839) presented with 13q loss or monosomy 13. The median follow-up for the overall population was 102 months (8.5 years), with a median OS of 75.5 months. Patients with high-risk translocations had significantly shorter median OS of 40.01 months compared to 80.65 months for those with standard risk translocations (p <0.001). The presence of ≥4 1q copies was associated with significantly reduced overall survival (2 copies: not reached, 3 copies: 69.4 months, ≥4 copies: 40.1774; p <0.001). This was consistent even when considering the presence of high-risk translocations (Figure 1). To confirm the independent significance of these findings, we performed multivariate Cox regression models, incorporating age at diagnosis, year of diagnosis, gender, presence of hyperdiploid disease, and presence of high-risk translocations. Given that overall survival outcomes were analyzed irrespective of treatment received, we incorporated year of diagnosis as a variable to control for potential impact of evolving treatment regimens over the years. The presence of ≥4 1q copies was associated with reduced OS, with a hazard ratio (HR) of 2.12 (CI: 1.38-3.26; p <0.001). The presence of 3 copies also showed prognostic significance (HR: 1.43; p: 0.012). Similarly, both the presence of TP53mut/mon17 (HR: 1.96, CI: 1.66-2.31; p <0.001) and 13qdel/mon13 (HR: 1.21, CI: 1.08-1.38) were associated with decreased OS. On the other hand, 1p deletion did not have any significant prognostic implications (HR: 1.84, CI: 0.38-1.59; p 0.113). When incorporating all cytogenetic events into a multivariate model, variables associated with reduced OS included age at diagnosis, the presence of both of 3 and ≥4 1q copies, TP53mut/mon17, t(4;14), t(14;16) and t(14;20). However, 13qDel/mon13 lost significance when incorporated with other abnormalities (Table 1). Conclusion Our investigation sheds light on the less explored realm of secondary cytogenetic abnormalities and confirm a strong association between increasing number of 1q copies and reduced overall survival, independent of other cytogenetic abnormalities and treatment regimens. These results underscore the utility of FISH-based comprehensive cytogenetic profiling at baseline, which enables reliable identification of high-risk patients. Future prospective trials should further elucidate the pathogenic mechanism for these findings. Our analysis used OS as primary endpoint and included over 2000 MM patients, reinforcing the clinical relevance of our findings.