SNP Genotypes Show Association with Common Toxicities during both VAD Induction and High Dose Melphalan with Autologous Transplant Support in Intergroup Trial S9321 for Myeloma: From the Bank on a Cure.
Abstract Patients with multiple myeloma show significant heterogeneity with respect to progression, therapeutic response and toxicities. Part of the Bank On A Cure project is to examine potential genetic polymorphisms that may be associated with common toxicities monitored in clinical trials. The SWOG/ECOG intergroup trial S9321 therapy includes VAD induction followed by randomization to high dose melphalan with autologous transplant support. Paticularly important toxicities with VAD include infection, thrombosis and hyperglycemia; and with melphalan toxicities in GI function are noted. Toxicities and genotypes were assessable during VAD induction on 569 patients; and during high dose melphalan on 161 patients. Toxicities examined included an array of symptoms: cardiovascular, flu-like, GI, neurologic, infection, lung, metabolic, and pain. Grade 3 toxicities found in at least 20 patients were compared to SNP genotypes. For VAD induced toxicities,TNF-alpha SNP genotypes showed association with fatigue, dyspnea and thrombosis; CYP3A4 SNP genotypes showed association with fatigue; DNA repair SNP genotypes in XRCC1 showed associations with infection, hyperglycemia and dyspnea; LT-alpha SNP genotypes showed association with dyspnea; and IL-6 and IL-10 SNP genotypes were marginally associated with neuropathy. After high dose melphalan, diarrhea was associated with SNP genotypes in TGF-beta, CYP3A4 and ERCC2. Interestingly, IL-6 polymorphisms were significantly associated with infection. The p values on the above associations ranged from .05 to .004. In addition, we noted ethnic distributions of some SNP genotypes were significantly different; and significant ethnic disparities in therapy induced hyperglycemia, fatigue, dyspnea and thrombosis were noted (p values range from .04 to .009). Of particular note is that the high producer IL-6 genotype is present in over 90% African Americans, compared to 35% Caucasians. Details of each association will be presented. Not all associations can easily be explained by known biologic function of the genotype, and it is important to qualify these results, as the likelihood of seeing some genotype associations by chance is quite high given the number of comparisons made. Further, we are continuing to examine additional prognostic factors that may, together with genotypes, provide collective predictors of toxicities. We consider these associations as targets for further study through the increasing sample acquisition in the Bank On A Cure project.
SNP Genotypes as Prognostic Factors Associated with Staging in Myeloma: The First Combined SNP Association Analysis of SWOG, ECOG, and MRC Clinical Trials from the Bank on a Cure.
Abstract Although multiple myeloma is clinically defined as the accumulation of clonal, malignant plasma cells in the bone marrow, the disease shows significant heterogeneity with regard to progression and therapeutic response. It is likely that germline genetic polymorphisms contribute significantly to an individual’s disease course and response. Bank On A CureTM (BOAC) is a collaborative project initiated with the International Myeloma Foundation (IMF) to develop a DNA bank of myeloma patient samples, through international cooperation. As the bank continues to expand, it provides a resource for the development of cooperative partnerships to assess specific clinical trials as well as conglomerate data. In this study, we have combined data from 3 phase III trials: ECOG trial E9486 (VBMCP + cyclophosphamide or interferon); SWOG trial 9321 (VAD induction followed by randomization to PBSC-supported high dose therapy versus standard dose therapy of VBMCP); and the MRC7 trial (comparing conventional chemotherapy [ABCM] with intravenous chemotherapy and high dose melphalan [CVAMP + HDM +PBSCT]). Five single nucleotide polymorphisms were examined based on associations demonstrated in previous individual trials: GSTP1, IL-6, LT-a, TNF-a, and ERCC2 (DNA repair). Patient samples included 412 from E9486, 569 from S9321, and 232 from MRC7 (total=1213). As a combined data set, genotype associations with overall survival did not reach statistical significance, suggesting SNP associations with survival may be therapy specific. One single association that did reach significance in the conglomerate data was TNF-a genotype association with age of disease onset (the high producer variant AA genotype showing a 5 year later age of onset than the AG/GG genotypes, or the overall mean of the trial, age 61 vs 56; p=.03). This is interesting in light of reports suggesting high production of TNF-a is found in myeloma patients and may actually promote myeloma. Yet, high production may also delay disease onset due to its role in other immunologic processes. Additional parameters including genotype associations with bone disease, CR rates, toxicities, and stage are being evaluated and will be presented. Preliminary results show that when SNPs from S9321 were included in a linear regression model, genotype risk groups could be identified; showing 73% correct association with ISS stage 1, and 75% correct association with ISS stage 3. This model, however, was not validated in the E9486 trial, with less than 50% genotype predictive ISS stage association. A number of highly significant ethnic genotype associations were noted, and are presented in a separate abstract. Given the likely complex interactions of multiple genetic variations, collective genotype comparisons may be required from larger pooled data sets BOAC is assembling to increase significant associations.
Incidence, Outcomes, and SNP Genotypes Show Different Ethnic Association in Patients with Myeloma, Assessed in SWOG and ECOG Clinical Trials S9321 and E9486: From the Bank on a Cure.
Abstract Bank On A CureTM is a collaborative project initiated with the International Myeloma Foundation to develop a DNA bank through international cooperation. The Bank provides a resource for the development of cooperative partnerships to assess genetic associations with disease etiology and outcomes. It is well established that genetic variation can have a significant ethnic association, and such variations may account for differences in disease incidence and outcomes. Indeed, African Americans have historically shown a 2.5–3 fold increase population incidence of myeloma compared to the Caucasian population. We have identified a number of potentially biologically relevant genetic variants that show significant differences in ethnic distribution. Using both clinical trials as well as the Coriel [normal] cell line data base, we find in all three cases the same highly significant differences (Fishers Exact Test) between African Americans and Caucasians in functionally relevant genetic polymorphisms, as represented by E9486 univariate analysis of IL-6 (p<.00001), LT-a (p<.0001), ERCC312 (p<.0001), XRCC399 (p=.006), IL-1RA (p<.00001), GST-M (p=.0008), and ERCC751 (p<.02). Subsequently, from trial S9321 we have found differences in a number of clinical outcomes associated with ethnicity. When toxicities between Caucasians and African Americans were examined, similar severe toxicity rates were noted after VAD induction related to neuropathies, nausea, and bone pain; whereas statistically significant differences were noted for infection rates, hyperglycemia, fatigue, dyspnea, and thrombosis (p<.04). During high dose melphalan treatment toxicities were not statistically different. Because significant association between IL-6 genotype and ethnicity was noted, we also examined serum levels of sIL-6R and CRP, available from trial E9486. African Americans patients show significantly lower sIL-6R levels compared to Caucasian patients (mean 149 vs 213 ng/ml; p<.0001). Interestingly, there is a significant association between IL-6 SNP genotype and sIL-6R distribution, with the high IL-6 producer GG genotype (in 90% African Americans) having the lowest sIL-6R compared to the CC or CG genotypes (p=.02). Regression analysis of IL-6 SNP and ethnicity on sIL-6R reveals that ethnicity is significantly associated with sIL-6R distribution after adjustment for IL-6 SNP genotype (p=.001) but not vice versa (p=.91), indicating the association of IL-6 SNP genotype with sIL-6R is due to its association with ethnicity. Together the data demonstrate that while associations may result from co-segregation of ethnic genotypes, they may influence disease risk and outcomes related to important genetic factors distributed unequally in different ethnic populations. Such differences may, for example, alter IL-6 responses. Further, multivariate analysis will be developed. Validation of genotype associations found in different ethnic populations will be an important consideration in evaluating myeloma etiology and outcomes.