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85 citation(s) found for "Zong, Yu".

Authors’ Response to the Letter to the Editor: Proactive Workplace Violence Prevention in Health Care: A Quality Improvement Project
Babin, Melissa M, Carlson, Cory M., Horvath, Paul R, Weiss, Morgan R., Vang, Zong

Mayo Clinic

Journal of Nursing Care Quality | August 19, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.1097/ncq.0000000000000996 | PMID 42617097 Get It

SensitiveCancerGPT: Generative AI for Actionable Pharmacogenomics in Precision Oncology
Chowdhury, Shaika , Lee, Mun Hwan, Sun, Lichao, Wang, Liewei, Yang, Ping, Zong, Nansu , Rajaganapathy, Sivaraman , Yang, Ping, Cerhan, James R.

Mayo Clinic

2026 IEEE 14th International Conference on Healthcare Informatics (ICHI) | August 12, 2026 | Volume: No volume available | Issue: No issue available | Pages: 592-600

10.1109/ichi69079.2026.00079 Get It

PTM-LLM: Matching Eligible Patients to Trials Based on Large Language Models and Retrieval-Augmented Generation
Chowdhury, Shaika , Wi, Chung-Il, Vassilaki, Maria, Liu, Xiaoke, Sio, Terence T., Garrick, Owen, Juhn, Young J., Tao, Cui, Zong, Nansu , Li, Xiaodi , Vassilaki, Maria , Juhn, Young J. , Cerhan, James R.

Mayo Clinic

2026 IEEE 14th International Conference on Healthcare Informatics (ICHI) | August 12, 2026 | Volume: No volume available | Issue: No issue available | Pages: 174-183

10.1109/ichi69079.2026.00033 Get It

Enhancing Lung Cancer Treatment Outcome Prediction through Semantic Feature Engineering Using Large Language Models
Lee, MunHwan, Chowdhury, Shaika , Klee, Eric W. , Yang, Ping, Sio, Terence, Wang, Liewei , Zong, Nansu , Li, Xiaodi , Rajaganapathy, Sivaraman , Cerhan, James R.

Mayo Clinic

2026 IEEE 14th International Conference on Healthcare Informatics (ICHI) | August 12, 2026 | Volume: No volume available | Issue: No issue available | Pages: 386-395

10.1109/ichi69079.2026.00057 Get It

Abstract B024: Cisplatin primes an interferon-driven CD8+ central memory T cell program to enable oncolytic virotherapy in gastrointestinal cancer malignancies
Parker, Joseph Brandon., Dong, Zhongyi , Liu, Tao, Guo, Qisen , Zhang, Haoyu, Ni, Bo, Bai, Long, Chen, Yiwen, Zong, Jiasheng, Xia, Xiang, Zheng, Jiaojiao, Pham, Hoang Tran , Elalfy, Aya, Ingram, Demarcus, Abdel-Hakeem, Ahmed, Ali, Muhammad, Zhang, Z L , Yang, Vivienne , Parker, Jefferson , Liu, Tao, Ni, Bo , Bai, Long, Xia, Xiang, Pham, Hoang Tran, Elalfy, Aya, Ali, Muhammad, Hartzell, Shannon

Mayo Clinic

Clinical Cancer Research | July 21, 2026 | Volume: 32 | Issue: 14_Supplement | Pages: B024-B024

10.1158/1557-3265.d32026-b024 Get It

Abstract Background: The limited efficacy of oncolytic virotherapy (OV) in gastrointestinal malignancies has been attributed to an immunologically inert tumor microenvironment. While cisplatin is widely used as a cytotoxic agent, its immunomodulatory effects remain incompletely defined. We hypothesized that cisplatin may reprogram the tumor immune landscape to enable more effective OV-mediated anti-tumor responses. Methods: We evaluated the effects of cisplatin in combination with two distinct oncolytic platforms, vesicular stomatitis virus (VSV) and adenovirus (AdV), across both in vitro and in vivo colorectal cancer models. In vivo efficacy was assessed using MC38 subcutaneous and peritoneal metastatic models, with analysis of tumor growth, survival, and toxicity. Immune profiling was performed using single-cell RNA sequencing (scRNA-seq), flow cytometry, and bulk RNA sequencing to interrogate changes in CD8+ T cell states and functional programs. Guided by these preclinical findings, a clinical trial combining XELOX, PD-1 blockade, and OV therapy was initiated (ChiCTR2500107607). Results: Cisplatin markedly enhanced OV-mediated anti-tumor efficacy across models, resulting in sustained tumor control and improved survival in both subcutaneous and peritoneal disease settings. This effect was conserved across viral platforms, indicating a virus-agnostic interaction. Mechanistically, cisplatin induced a robust interferon (IFN)–dominant transcriptional program, characterized by upregulation of interferon-stimulated genes, including IRF7, IRF9, and ISG15. Single-cell analysis revealed that combination therapy reshaped the CD8+ T cell compartment, promoting the expansion of a population with transcriptional and functional features of central memory T cells (Tcm), alongside reduced exhaustion signatures. These changes were accompanied by enhanced cytokine signaling pathways associated with T cell maintenance and function, including IL-2, IL-7, and IL-15. In vitro, the combination of cisplatin and OV increased tumor cell death and interferon-γ production, supporting a model in which cytotoxic and immunostimulatory effects are mechanistically linked. A phase I clinical trial has been initiated. In gastric cancer, patients with retroperitoneal metastases are being treated with OV in combination with PD-1 blockade (ongoing). In colorectal cancer, the strategy is being evaluated in the neoadjuvant setting with an rectal preservation approach. Conclusions: Our findings identify a previously unrecognized role for cisplatin in priming an interferon-driven immune program that promotes Tcm differentiation and function, thereby enabling durable responses to oncolytic virotherapy. This work provides a mechanistic rationale for leveraging chemotherapy-induced immune reprogramming to enhance viro-immunotherapy and supports the clinical translation of this strategy in gastrointestinal malignancies. Citation Format: Joseph Brandon. Parker, Zhongyi Dong, Tao Liu, Qisen Guo, Haoyu Zhang, Bo Ni, Long Bai, Yiwen Chen, Jiasheng Zong, Xiang Xia, Jiaojiao Zheng, Hoang Tran Pham, Aya Elalfy, Demarcus Ingram, Ahmed Abdel-Hakeem, Muhammad Ali, Shannon Hartzell, Zizhen Zhang, Vivienne Yang. Cisplatin primes an interferon-driven CD8+ central memory T cell program to enable oncolytic virotherapy in gastrointestinal cancer malignancies [abstract]. In: Proceedings of AACR Drug Discovery and Development (AACR D3) Conference; 2026 Jul 21-24; Boston, MA. Philadelphia (PA): AACR; Clin Cancer Res 2026;32(14_Suppl):Abstract nr B024.
Developmental Control of DNA Damage Responses in α- and β-Cells Shapes the Selective β-Cell Susceptibility in Diabetes
Varghese, Sneha S., Peña, Alessandro Giovanni Hernandez-De La, Wang, Liu, Ruiz, Victor, Tixi, Wilma, Pandey, Aparamita, Anchondo, Laura, Chiu, Amy, Wu, Xiwei, Georgia, Senta K. , Shih, Hung-Ping, Bhattacharya, Supriyo, Dhawan, Sangeeta , Wang, Liu , Wei, Zong , Dhawan, Sangeeta , Varghese, Sneha S., Peña, Alessandro Giovanni Hernandez-De La , Ruiz, Victor, Tixi, Wilma, Pandey, Aparamita, Anchondo, Laura M. , Chiu, Amy, Wu, Xiwei, Georgia, Senta K. , Shih, Hung-Ping, Bhattacharya, Supriyo

Mayo Clinic

Diabetes | July 15, 2026 | Volume: 75 | Issue: 9 | Pages: 1612-1628

10.2337/db25-1027 | PMID 42455072 Get It

Accumulation of DNA damage drives β-cell dysfunction, senescence, and death in type 1 and type 2 diabetes. Although α-cell dysfunction also contributes to disease pathology, α-cells remain remarkably resistant to senescence and increased cell death under diabetogenic stress. The mechanisms underlying these differential responses to diabetogenic stress, particularly differences in their DNA damage vulnerability, remain unclear. We demonstrate that replication introduces a window of genomic vulnerability in both α- and β-cells during neonatal growth, with α-cells exhibiting higher replication rates and DNA damage. We show that neonatal β-cells resolve DNA damage more efficiently during mitosis and favor error-free repair, whereas α-cells compensate for their greater DNA-damage vulnerability through increased cellular turnover. Using mouse models of overnutrition and diabetes, we show that β-cells exhibit greater vulnerability to terminal DNA damage and impaired repair capacity under diabetogenic stress, with compensatory replication amplifying this vulnerability. We demonstrate that developmental and postnatal epigenetic programs shape the differential DNA damage vulnerability of postnatal β- and α-cells. Loss of de novo DNA methyltransferase Dnmt3a in pancreatic progenitors selectively increases the DNA damage vulnerability of β-cells from neonatal growth through adulthood. Complementing this developmental process, enhancer analyses reveal lineage-specific DNA damage response regulatory landscapes that are remodeled in β-cells under metabolic stress. Collectively, our findings uncover novel developmental mechanisms that shape the distinct DNA damage responses of postnatal β- and α-cells during growth and diabetes. Article Highlights Mechanisms underlying the differential susceptibility of pancreatic β- and α-cells to diabetogenic stress remain unclear. We investigated whether replication, repair fidelity, and developmental epigenetic programs determine the vulnerability of postnatal β- and α-cells to DNA damage, a key driver of β-cell failure in diabetes. Replication introduces DNA damage vulnerability in both neonatal β- and α-cells, yet β-cells resolve damage more efficiently. Loss of DNA methyltransferase 3a in pancreatic progenitors selectively heightens β-cell DNA damage vulnerability that persists into adulthood. Moreover, diabetogenic stress preferentially compromises β-cell repair fidelity. These findings reveal how developmental programs shape β-cell resilience and may influence lifelong diabetes risk.
Platinum chemotherapy and oncolytic virotherapy as used to cooperatively sustain stem-like CD8⁺ T-cell immunity via type I interferon modulation.
Yang, Vivienne , Dong, Zhongyi , Liu, T J, 郭其森, Zhang, H Z, Ni, Bo, Bai, Long, Chen, Yiwen, Zong, Jiasheng, Xia, Xiang, Zheng, Jiaojiao, Pham, Hoang Tran , Parker, Jefferson , Morecroft, Renee, Elalfy, Aya, Ingram, Demarcus, Abdel-Hakeem, Ahmed, Ali, Muhammad, Ni, Bo , Bai, Long, Xia, Xiang, Pham, Hoang Tran, Morecroft, Renée , Elalfy, Aya, Prada, Libardo Rueda , Ali, Muhammad, Zhang, Zizhen

Mayo Clinic

Journal of Clinical Oncology | May 28, 2026 | Volume: 44 | Issue: 16_suppl | Pages: No page available

10.1200/jco.2026.44.16_suppl.e14545 Get It

e14545 Background: Durable antitumor immunity depends on the maintenance of stem-like CD8⁺ T cells capable of sustaining long-term effector responses. Oncolytic viruses (OVs) are potent immunomodulatory agents that reshape the tumor microenvironment and augment antitumor immunity. We hypothesized that platinum-based chemotherapy alters tumor-intrinsic type I interferon (IFN-I) signaling in a manner that can be functionally restored by OV therapy, thereby promoting the generation and persistence of stem-like CD8⁺ T cells. Methods: Tumor cells treated with platinum chemotherapy were evaluated in vitro for changes in IFN-I pathway activity, OV replication, and markers of immunogenic cell death (ICD). Syngeneic mouse tumor models were used to assess antitumor efficacy and immune remodeling following combination therapy. Tumor-infiltrating lymphocytes were analyzed by single-cell RNA sequencing and multiparameter flow cytometry to define CD8⁺ T-cell states and functional programs. Guided by these preclinical findings, a clinical trial combining XELOX, PD-1 blockade, and OV therapy was initiated (ChiCTR2500107607). Results: Platinum chemotherapy significantly suppressed tumor-intrinsic IFN-I signaling, while OV therapy restored antiviral responses, enhanced viral replication, and increased ICD in vitro. In vivo, the combination strategy resulted in superior tumor control and profound remodeling of the tumor immune microenvironment. The most pronounced immunologic effect was observed within the stem-like CD8⁺ T-cell compartment. Combination therapy induced a distinct population of TCF7⁺ ISG15^high NFATC1^low AP-1^low CD8⁺ T cells, characterized by restrained activation, enhanced persistence, and reduced propensity toward terminal exhaustion. In IRF7-deficient tumors, this stem-like CD8⁺ T-cell population failed to emerge and antitumor efficacy was significantly diminished, indicating that moderate tumor-intrinsic IFN-I signaling is required for this immune state. Conclusions: Tumor-intrinsic type I interferon signaling is a critical determinant of synergy between platinum chemotherapy and oncolytic virotherapy, enabling the maintenance of durable stem-like CD8⁺ T-cell immunity. These findings establish a mechanistic rationale for combining platinum chemotherapy, oncolytic viruses, and immune checkpoint blockade and support ongoing clinical translation. Clinical trial information: ChiCTR2500107607.
AERO: An AI Agent for Adaptive Eligibility Refinement and Optimization of Clinical Trial Criteria in Real-World Trial Emulation
James, Jose, Zong, Nansu , Li, Xiaodi , Pellikka, Patricia A.

Mayo Clinic

No container title available | May 1, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.04.30.26352142 Get It

Abstract Randomized controlled trials (RCTs) provide high internal validity but often rely on restrictive eligibility criteria that limit generalizability and complicate real-world trial emulation. We propose AERO (AI Agent for Adaptive Eligibility Refinement and Optimization), an agentic framework that systematically adapts clinical trial eligibility criteria for application to electronic health record data. AERO integrates external clinical knowledge sources and large language model–based reasoning to classify criteria as strict inclusion, safety exclusion, confounder, or operational artifact. We evaluated AERO by emulating the WARCEF trial using Mayo Clinic Platform data restricted to the pre-trial completion period. Emulation with optimized criteria yielded a hazard ratio of 1.561 (p = 0.0605), consistent with the original neutral trial finding (HR = 1.01, p = 0.91). An ablation analysis demonstrated that eligibility handling decisions materially influence observed treatment effects. These results highlight the importance of systematic, knowledge-informed eligibility refinement in real-world evidence generation.
FXR and BET signaling orchestrate to protect β cells
Cayabyab, Fritz , Tipirneni, Jalan, Chen, David, Choi, Jinhyuk, Hamba, Yu , Pham, Nhi, Tacto, Clarissa , Wu, Jie, Wang, Liu , Gershon, Paul D. , Perez, Harvey, Kim, Kiyoka, Shaheen, Ameen, Ipp, Eli , Wei, Zong, YOSHIHARA, Eiji, Wu, Jie , Mirzakhanyan, Yeva , Harada, Naoki , Fang, Sungsoon , Chen, Lin‐Feng

Mayo Clinic

No container title available | April 14, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.64898/2026.04.10.716420 | PMID 42039610 Get It

Abstract In both type 1 and type 2 diabetes (T1D and T2D), insulin-producing β cells undergo progressive dysfunction due to inflammation, leading to impaired glucose responsiveness, dedifferentiation, and cell loss. While bile acid (BA) dysregulation under diabetic conditions is known to influence metabolic and inflammatory pathways, its mechanistic role in β cell regulation remains incompletely defined 1–3 . Here we show that bile acid sensor Farnesoid X receptor (FXR) and Bromodomain and Extra-Terminal motif (BET) signaling cooperatively regulates β cell inflammatory response and β cell identity. We identified the physiological protein-protein interaction between FXR and the bromodomain-containing protein 4 (BRD4) as a regulatory axis that protects against β cell dysfunction. We show that FXR activation by Fexaramine (Fex) together with BRD4 inhibition by JQ1 synergistically suppressed IL-1β-induced inflammation while also improving β cell identity and insulin secretion in both db/db model and high-fat diet (HFD) plus multi low-dose streptozotocin (MLD-STZ) model of diabetes. Importantly, this cooperative effect is abolished in β cell–specific FXR knockout (βFXRKO) mice, establishing that FXR is required for the functional synergy between these pathways in vivo . Mechanistically, structure-guided modeling and mutational analyses identified a direct interaction between FXR and the BD2 domain of BRD4, depending on specific lysine acetylation sites. Additionally, inhibition of the BD2 domain of BET combined with FXR activation markedly improved β cell survival in human T1D and T2D models established from human pluripotent stem cell (hPSC)-derived islet-like organoids (HILOs). Collectively, these findings establish a BA–bromodomain axis as a transcriptional interface linking metabolic signaling and chromatin regulation, and highlight FXR–BET targeting as a promising strategy to counter progressive β cell failure in diabetes.
Temporal single-cell analysis reveals age-associated delay in immune resolution after respiratory viral infection
Wu, Yue , Li, Chaofan , Tang, Jinyi, Cheon, In Su , Zhu, Bibo, Zhang, Ruixuan, Hu, Shengen Shawn, Johnson, Aaron J, Zong, Hui, dong, Haidong, Gao, Xiaochen , Fain, Cori E. , Narasimhan, Harish , Santos, Gislane de Almeida , Ayasoufi, Katayoun , Johnson, Aaron J. , Zong, Hui , Zang, Chongzhi , Dong, Haidong , Sun, Jie

Mayo Clinic

No container title available | March 12, 2026 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.7554/elife.109988.1 Get It

Aging is a major risk factor for increased morbidity and mortality following acute respiratory virus infections. To elucidate the immune determinants underlying viral pathogenesis and delayed lung repair in the aged lung, a comprehensive time-course study was conducted. Single-cell RNA sequencing (scRNAseq) and high-dimensional flow cytometry were utilized to compare lungs from young and aged mice infected with influenza A virus (IAV). Aged hosts displayed diminished alveolar macrophage (AM) and dendritic cell (DC) but elevated monocyte-derived macrophage (MoM) and interstitial macrophage (IM) presence following infection. Additionally, enhanced accumulation of adaptive immune cells, including CD4+ tissue-resident helper (TRH) cells, CD8+ tissue-resident memory (TRM) cells, and a B cell subset resembling age-associated B cells, was observed in the memory phase. Pathway analysis revealed that elevated type I and II interferon (IFNα/γ) signaling, especially in MoM/IM subsets, distinguished the aged hosts from the young. Inhibition of IFNα/γ signaling after viral clearance improved long-term respiratory outcomes and reduced both IM and TRH populations in aged mice. These findings highlight the pivotal role of IFNα/γ signaling, likely within MoM/IM subsets, in driving the exuberant persistence of adaptive immune cells and chronic immunopathology in the aged lung following acute viral infection.