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80 citation(s) found for "Tao, Cui".

Transformation of standardized clinical models based on OWL technologies: from CEM to OpenEHR archetypes
Legaz-García, María del Carmen, Marcos, Menarguez-Tortosa , Fernández‐Breis, Jesualdo Tomás , Tao, Cui , Chute, Christopher G. , Legaz-García, María del Carmen, Tao, Cui

Mayo Clinic

Journal of the American Medical Informatics Association | February 11, 2015 | Volume: 22 | Issue: 3 | Pages: 536-544

10.1093/jamia/ocu027 | PMID 25670753 Get It

Abstract Introduction The semantic interoperability of electronic healthcare records (EHRs) systems is a major challenge in the medical informatics area. International initiatives pursue the use of semantically interoperable clinical models, and ontologies have frequently been used in semantic interoperability efforts. The objective of this paper is to propose a generic, ontology-based, flexible approach for supporting the automatic transformation of clinical models, which is illustrated for the transformation of Clinical Element Models (CEMs) into openEHR archetypes. Methods Our transformation method exploits the fact that the information models of the most relevant EHR specifications are available in the Web Ontology Language (OWL). The transformation approach is based on defining mappings between those ontological structures. We propose a way in which CEM entities can be transformed into openEHR by using transformation templates and OWL as common representation formalism. The transformation architecture exploits the reasoning and inferencing capabilities of OWL technologies. Results We have devised a generic, flexible approach for the transformation of clinical models, implemented for the unidirectional transformation from CEM to openEHR, a series of reusable transformation templates, a proof-of-concept implementation, and a set of openEHR archetypes that validate the methodological approach. Conclusions We have been able to transform CEM into archetypes in an automatic, flexible, reusable transformation approach that could be extended to other clinical model specifications. We exploit the potential of OWL technologies for supporting the transformation process. We believe that our approach could be useful for international efforts in the area of semantic interoperability of EHR systems.
EXPLORING THE PHARMACOGENOMICS KNOWLEDGE BASE (PHARMGKB) FOR REPOSITIONING BREAST CANCER DRUGS BY LEVERAGING WEB ONTOLOGY LANGUAGE (OWL) AND CHEMINFORMATICS APPROACHES
Shen, Feichen , Zhu, Qian , Tao, Cui , Chute, Christopher G.

Mayo Clinic

Biocomputing 2014 | November 18, 2013 | Volume: No volume available | Issue: No issue available | Pages: 172-182

10.1142/9789814583220_0017 Get It

Managing interoperability and compleXity in health systems - MIXHS'12
Tao, Cui , Bouamrane, Matt-Mouley

Mayo Clinic

Proceedings of the 21st ACM international conference on Information and knowledge management | November 15, 2012 | Volume: No volume available | Issue: No issue available | Pages: 2758-2759

10.1145/2396761.2398754 Get It

Optimizing semantic MEDLINE for translational science studies using semantic web technologies
Zhang, Yuji , Jiang, Guoqian , Tao, Cui , Bouamrane, Matt-Mouley , Chute, Christopher G.

Mayo Clinic

Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems | November 7, 2012 | Volume: No volume available | Issue: No issue available | Pages: 53-58

10.1145/2389672.2389683 Get It

An overview of electronic health information management systems quality assessment
Mair, Frances S , Bouamrane, Matt-Mouley , Tao, Cui

Mayo Clinic

Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems | November 7, 2012 | Volume: No volume available | Issue: No issue available | Pages: 37-46

10.1145/2389672.2389680 Get It

Modeling UIMA type system using web ontology language
Wu, Stephen , Liu, Hongfang , Tao, Cui , Chute, Christopher G.

Mayo Clinic

Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems | November 7, 2012 | Volume: No volume available | Issue: No issue available | Pages: 31-36

10.1145/2389672.2389679 Get It

Towards event sequence representation, reasoning and visualization for EHR data
Wongsuphasawat, Krist, Clark, Kimberly , Plaisant, Catherine , Tao, Cui , Shneiderman, Ben , Chute, Christopher G.

Mayo Clinic

Proceedings of the 2nd ACM SIGHIT International Health Informatics Symposium | January 31, 2012 | Volume: No volume available | Issue: No issue available | Pages: 801-806

10.1145/2110363.2110461 Get It

Toward semantic web based knowledge representation and extraction from electronic health records
Pathak, Jyotishman , Welch, Susan, Huff, Stanley M. , Tao, Cui , Bouamrane, Matt-Mouley , Chute, Christopher G.

Mayo Clinic

Proceedings of the first international workshop on Managing interoperability and complexity in health systems | November 16, 2011 | Volume: No volume available | Issue: No issue available | Pages: 75-78

10.1145/2064747.2064765 Get It

Managing complexity in pre-operative information management systems
Bouamrane, Matt-Mouley , Mair, Frances S , Tao, Cui

Mayo Clinic

Proceedings of the first international workshop on Managing interoperability and complexity in health systems | November 16, 2011 | Volume: No volume available | Issue: No issue available | Pages: 3-10

10.1145/2064747.2064751 Get It

Managing interoperability and complexity inhealth systems
Bouamrane, Matt-Mouley , Tao, Cui

Mayo Clinic

Proceedings of the 20th ACM international conference on Information and knowledge management | November 16, 2011 | Volume: No volume available | Issue: No issue available | Pages: 2635-2636

10.1145/2063576.2064050 Get It