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51 citation(s) found for "Nair, Asha".

Long non-coding RNA profile in mantle cell lymphoma identifies a functional lncRNA ROR1-AS1 associated with EZH2/PRC2 complex
Hu, Guangzhen , Troska, Tammy P., Nair, Asha, Gupta, Shiv K. , Gupta, Mamta

Mayo Clinic

Oncotarget | May 18, 2017 | Volume: 8 | Issue: 46 | Pages: 80223-80234

10.18632/oncotarget.17956 | PMID 29113297 Get It

Combined AURKA and H3K9 Methyltransferase Targeting Inhibits Cell Growth By Inducing Mitotic Catastrophe
Mathison, Angela , Salmonson, Ann, Missfeldt, Mckenna, Bintz, Jennifer , Williams, Monique , Kossak, Sarah, Nair, Asha, Assuncao, Thiago M. de , Christensen, Trace , Buttar, Navtej , Lomberk, Gwen , De Assuncao, Thiago M, Huebert, Robert, Iovanna, Juan , Huebert, Robert C. , Lomberk, Gwen L , Mathison, Angela J

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Molecular Cancer Research | April 25, 2017 | Volume: 15 | Issue: 8 | Pages: 984-997

10.1158/1541-7786.mcr-17-0063 | PMID 28442587 Get It

Abstract The current integrative pathobiologic hypothesis states that pancreatic cancer (PDAC) develops and progresses in response to an interaction between known oncogenes and downstream epigenomic regulators. Congruently, this study tests a new combinatorial therapy based on the inhibition of the Aurora kinase A (AURKA) oncogene and one of its targets, the H3K9 methylation–based epigenetic pathway. This therapeutic combination is effective at inhibiting the in vitro growth of PDAC cells both, in monolayer culture systems, and in three-dimensional spheroids and organoids. The combination also reduces the growth of PDAC xenografts in vivo. Mechanistically, it was found that inhibiting methyltransferases of the H3K9 pathway in cells, which are arrested in G2–M after targeting AURKA, decreases H3K9 methylation at centromeres, induces mitotic aberrations, triggers an aberrant mitotic check point response, and ultimately leads to mitotic catastrophe. Combined, these data describe for the first time a hypothesis-driven design of an efficient combinatorial treatment that targets a dual oncogenic–epigenomic pathway to inhibit PDAC cell growth via a cytotoxic mechanism that involves perturbation of normal mitotic progression to end in mitotic catastrophe. Therefore, this new knowledge has significant mechanistic value as it relates to the development of new therapies as well as biomedical relevance. Implications: These results outline a model for the combined inhibition of a genetic-to-epigenetic pathway to inhibit cell growth and suggest an important and provocative consideration for harnessing the capacity of cell-cycle inhibitors to enhance the future use of epigenetic inhibitors. Mol Cancer Res; 15(8); 984–97. ©2017 AACR.
A candidate regulatory variant at the TREM gene cluster associates with decreased Alzheimer's disease risk and increased TREML1 and TREM2 brain gene expression
Carrasquillo, Minerva M., Allen, Mariet , Burgess, Jeremy D. , Wang, Xue , Strickland, Samantha L. , Aryal, Shivani , Siuda, Joanna , Kachadoorian, Michaela, Medway, Christopher, Younkin, Curtis, Nair, Asha, Chanana, Pritha , Serie, Daniel, Nguyen, Thuy , Lincoln, Sarah, Malphrus, Kimberly G., Morgan, Kevin , Golde, Todd E. , Price, Nathan D. , White, Charles C. , Jager, Philip L. De , Bennett, David A. , Asmann, Yan W. , Petersen, Ronald , Graff‐Radford, Neill R., Younkin, Steven G., Ertekin‐Taner, Nilüfer , Kachadoorian, Michaela L, Younkin, Curtis S, Crook, Julia E. , Bennett, David A. , Carrasquillo, Minerva M. , Siuda, Joanna S. , Wang, Chen , Graff‐Radford, Neill R., Dickson, Dennis W. , Price, Nathan D

Mayo Clinic

Alzheimer's & Dementia | December 8, 2016 | Volume: 13 | Issue: 6 | Pages: 663-673

10.1016/j.jalz.2016.10.005 | PMID 27939925 Get It

AbstractIntroductionWe hypothesized that common Alzheimer's disease (AD)‐associated variants within the triggering receptor expressed on myeloid (TREM) gene cluster influence disease through gene expression.MethodsExpression microarrays on temporal cortex and cerebellum from ∼400 neuropathologically diagnosed subjects and two independent RNAseq replication cohorts were used for expression quantitative trait locus analysis.ResultsA variant within a DNase hypersensitive site 5′ of TREM2, rs9357347‐C, associates with reduced AD risk and increased TREML1 and TREM2 levels (uncorrected P = 6.3 × 10−3 and 4.6 × 10−2, respectively). Meta‐analysis on expression quantitative trait locus results from three independent data sets (n = 1006) confirmed these associations (uncorrected P = 3.4 × 10−2 and 3.5 × 10−3, Bonferroni‐corrected P = 6.7 × 10−2 and 7.1 × 10−3, respectively).DiscussionOur findings point to rs9357347 as a functional regulatory variant that contributes to a protective effect observed at the TREM locus in the International Genomics of Alzheimer's Project genome‐wide association study meta‐analysis and suggest concomitant increase in TREML1 and TREM2 brain levels as a potential mechanism for protection from AD.
Circular RNAs and their associations with breast cancer subtypes
Nair, Asha, Niu, Nifang, Tang, Xiaojia , Thompson, Kevin J. , Wang, Liewei , Kocher, Jean‐Pierre , Subramanian, Subbaya , Kalari, Krishna R. , Nair, Asha A, Thompson, Kevin J , Kalari, Krishna R , Tang, Xiaojia

Mayo Clinic

Oncotarget | November 5, 2016 | Volume: 7 | Issue: 49 | Pages: 80967-80979

10.18632/oncotarget.13134 | PMID 27829232 Get It

O2‐10‐04: A Regulatory Variant at the TREM Gene Cluster Associates with Decreased Alzheimer’s Disease Risk and Increased TREML1 and TREM2 Brain Gene Expression
Carrasquillo, Minerva M. , Allen, Mariet , Strickland, Samantha L. , Aryal, Shivani , Kachadoorian, Michaela, Medway, Christopher, Younkin, Curtis, Nair, Asha, Chanana, Pritha , Wang, Xue , Serie, Daniel, Nguyen, Thuy , Lincoln, Sarah, Malphrus, Kimberly G., Golde, Todd E. , Jager, Philip L. De , Asmann, Yan W. , Younkin, Steven G., Ertekin‐Taner, Nilüfer , Carrasquillo, Minerva M. , Burgess, Jeremy D. , Siuda, Joanna S. , Morgan, Kevin , Price, Nathan D. , White, Charles, Soni, Rajesh K , Crook, Julia E. , Dickson, Dennis W.

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Alzheimer's & Dementia | October 17, 2016 | Volume: 12 | Issue: 7S_Part_5 | Pages: No page available

10.1016/j.jalz.2016.06.451 Get It

Nonbiased Molecular Screening Identifies Novel Molecular Regulators of Fibrogenic and Proliferative Signaling in Myxomatous Mitral Valve Disease
Thalji, Nassir M , Hagler, Michael A , Zhang, Heyu , Casaclang‐Verzosa, Grace , Nair, Asha, Suri, Rakesh M. , Miller, Jordan D. , Nair, Asha A, Miller, Jordan

Mayo Clinic

Circulation: Cardiovascular Genetics | March 27, 2015 | Volume: 8 | Issue: 3 | Pages: 516-528

10.1161/circgenetics.114.000921 | PMID 25814644 Get It

Background— Pathological processes underlying myxomatous mitral valve degeneration (MMVD) remain poorly understood. We sought to identify novel mechanisms contributing to the development of this condition. Methods and Results— Microarrays were used to measure gene expression in 11 myxomatous and 11 nonmyxomatous human mitral valves. Differential gene expression (thresholds P <0.05; fold-change >1.5) and pathway activation (Ingenuity) were confirmed using quantitative reverse transcriptase polymerase chain reaction and immunohistochemistry. Contributions of bone morphogenetic protein 4 and transforming growth factor (TGF)-β2 to differential gene expression were evaluated in vitro. Contributions of angiotensin II to differential pathway activation were examined in mice in vivo. A total of 2602 genes were differentially expressed between myxomatous and nonmyxomatous valves. Canonical TGF-β signaling was increased in MMVD because of increased ligand expression and derepression of SMA mothers against decapentaplegic 2/3 signaling and was confirmed with quantitative reverse transcriptase polymerase chain reaction and immunohistochemistry. Myxomatous valves demonstrated activation of canonical bone morphogenetic protein and Wnt/β-catenin signaling and upregulation of their common target runt-related transcription factor 2. Our data set provided transcriptional and immunohistochemical evidence for activated immune cell infiltration. In vitro treatment of mitral valve interstitial cells with TGF-β2 increased β-catenin signaling at mRNA and protein levels, suggesting interactions between TGF-β2 and Wnt signaling. In vivo infusion of mice with angiotensin II recaptured several changes in signaling pathways characteristic of human MMVD. Conclusions— These data support a new disease framework whereby activation of TGF-β2, bone morphogenetic protein 4, Wnt/β-catenin, or immune signaling plays major roles in the pathogenesis of MMVD. We propose these pathways act in a context-dependent manner to drive phenotypic changes that fundamentally differ from those observed in aortic valve disease and open novel avenues guiding future research into the pathogenesis of MMVD.
Bioinformatics Strategies for Identifying Regions of Epigenetic Deregulation Associated with Aberrant Transcript Splicing and RNA-editing
Champion, Mia D., Hlady, Ryan A. , Yan, Huihuang , Evans, Jared M., Nie, Jeff, Nandakumar, Kannabiran, Davila, Jaime , Moore, Raymond M. , Nair, Asha, Zhu, Yuanxiao, Ördög, Tamás , Kocher, Jean-Pierre A., Jonasch, Eric, Tibes, Raoul , Lee, Jeong‐Heon , Bogenberger, James M. , O’Brien, Daniel J. , Kortüm, K. Martin , Zhang, Zhiguo , Joseph, Richard W. , Jonasch, Eric W. , Robertson, Keith D. , Ho, Thai H. , Davila, Jaime I

Mayo Clinic

Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms | February 2, 2015 | Volume: No volume available | Issue: No issue available | Pages: 163-170

10.5220/0005248001630170 Get It