Citations

Clear

3216 citation(s) found for "Zhang, Yu".

H/D Exchange Centroid Monitoring is Insufficient to Show Differences in the Behavior of Protein States
Zhang, Jun , Ramachandran, Pradeep L., Kumar, Rajiv , Gross, Michael L. , Kumar, Rajiv

Mayo Clinic

Journal of the American Society for Mass Spectrometry | February 8, 2013 | Volume: 24 | Issue: 3 | Pages: 450-453

10.1007/s13361-012-0555-z | PMID 23397137 Get It

Prospective feasibility study on the use of multiband mucosectomy for endoscopic resection of early squamous neoplasia in the esophagus
Boerwinkel, David F., He, Siyi , Weusten, Bas L. , Fleischer, David E., Lü, Ning , Zuo, Sasa , Dou, L., Zhang, Yu , Xue, Liyan , Dawsey, Sanford M. , Qin, Xianhui , Dou, L., Bergman, Jacques , Wang, Guomin

Mayo Clinic

Endoscopy | December 20, 2012 | Volume: 45 | Issue: 03 | Pages: 167-173

10.1055/s-0032-1326011 | PMID 23258547 Get It

Characterization of the R162W Kir7.1 mutation associated with snowflake vitreoretinopathy
Sharma, Anil K. , Edwards, Albert O., Hughes, Bret A. , Zhang, Wei , Zhang, Xiaoming , Wang, Hui

Mayo Clinic

American Journal of Physiology-Cell Physiology | December 20, 2012 | Volume: 304 | Issue: 5 | Pages: C440-C449

10.1152/ajpcell.00363.2012 | PMID 23255580 Get It

KCNJ13 encodes Kir7.1, an inwardly rectifying K+ channel that is expressed in multiple ion-transporting epithelia. A mutation in KCNJ13 resulting in an arginine-to-tryptophan change at residue 162 (R162W) of Kir7.1 was associated with snowflake vitreoretinal degeneration, an inherited autosomal-dominant disease characterized by vitreous degeneration and mild retinal degeneration. We used the Xenopus laevis oocyte expression system to assess the functional properties of the R162W (mutant) Kir7.1 channel and determine how wild-type (WT) Kir7.1 is affected by the presence of the mutant subunit. Recordings obtained via the two-electrode voltage-clamp technique revealed that injection of oocytes with mutant Kir7.1 cRNA resulted in currents and cation selectivity that were indistinguishable from those in water-injected oocytes, suggesting that the mutant protein does not form functional channels in the plasma membrane. Coinjection of oocytes with equal amounts of mutant and WT Kir7.1 cRNAs resulted in inward K+ and Rb+ currents with amplitudes that were ∼17% of those in oocytes injected with WT Kir7.1 cRNA alone, demonstrating a dominant-negative effect of the mutant subunit. Similar to oocytes injected with WT Kir7.1 cRNA alone, coinjected oocytes exhibited inwardly rectifying Rb+ currents that were more than seven times larger than K+ currents, indicating that mutant subunits did not alter Kir7.1 channel selectivity. Immunostaining of Xenopus oocytes or Madin-Darby canine kidney cells expressing mutant or WT Kir7.1 demonstrated distribution of both proteins primarily in the plasma membrane. Our data suggest that the R162W mutation suppresses Kir7.1 channel activity, possibly by negatively impacting gating by membrane phosphadidylinositol 4,5-bisphosphate.
Misregulation of human sortilin splicing leads to the generation of a nonfunctional progranulin receptor
Prudencio, Mercedes , Jansen‐West, Karen , Lee, Chris W. , Zhang, Yong‐Jie , Xu, Ya-Fei, Gass, Jennifer , Stuani, Cristiana , Stetler, Caroline, Rademakers, Rosa , Dickson, Dennis W. , Buratti, Emanuele , Petrucelli, Leonard , Gendron, Tania F. , Zhang, Yong-Jie , Prudencio, Mercedes , Dickson, Dennis W

Mayo Clinic

Proceedings of the National Academy of Sciences | December 11, 2012 | Volume: 109 | Issue: 52 | Pages: 21510-21515

10.1073/pnas.1211577110 | PMID 23236149 Get It

Sortilin 1 regulates the levels of brain progranulin (PGRN), a neurotrophic growth factor that, when deficient, is linked to cases of frontotemporal lobar degeneration with TAR DNA-binding protein-43 (TDP-43)–positive inclusions (FTLD-TDP). We identified a specific splicing enhancer element that regulates the inclusion of a sortilin exon cassette (termed Ex17b) not normally present in the mature sortilin mRNA. This enhancer element is consistently present in sortilin RNA of mice and other species but absent in primates, which carry a premature stop codon within the Ex17b sequence. In the absence of TDP-43, which acts as a regulatory inhibitor, Ex17b is included in the sortilin mRNA. In humans, in contrast to mice, the inclusion of Ex17b in sortilin mRNA generates a truncated, nonfunctional, extracellularly released protein that binds to but does not internalize PGRN, essentially acting as a decoy receptor. Based on these results, we propose a potential mechanism linking misregulation of sortilin splicing with altered PGRN metabolism.
A new Fourier-based approach to measure irregularity of breast masses in mammograms
Shin, Sung Y. , Wang, Wei , Choi, Hyung Do , Zhang, Gensheng , Hruska, Carrie B.

Mayo Clinic

Proceedings of the 2012 ACM Research in Applied Computation Symposium | November 27, 2012 | Volume: No volume available | Issue: No issue available | Pages: 153-157

10.1145/2401603.2401638 Get It

Autophagy Control by the VEGF-C/NRP-2 Axis in Cancer and Its Implication for Treatment Resistance
Stanton, Marissa J., Dutta, Samikshan , Zhang, Heyu , Polavaram, Navatha S., Leontovich, Alexey A. , Hönscheid, Pia , Tindall, Donald J., Muders, Michael H. , Datta, Kaustubh , Sinicrope, Frank A.

Mayo Clinic

Cancer Research | November 13, 2012 | Volume: 73 | Issue: 1 | Pages: 160-171

10.1158/0008-5472.can-11-3635 | PMID 23149913 Get It

Abstract A major contributor to cancer mortality is recurrence and subsequent metastatic transformation following therapeutic intervention. Therefore, in order to develop new treatment modalities and improve the efficacy of current ones, it is important to understand the molecular mechanisms that promote resistance to therapy in cancer cells. One pathway contributing to therapy resistance is autophagy, a self-digestive process that can eliminate unnecessary or damaged organelles to protect cancer cells from death. We have found that the VEGF-C/NRP-2 axis is involved in the activation of autophagy, which helps cancer cell survival following treatment. Inhibition of mTOR complex 1 activity by this axis is the underlying mechanism for the activation of autophagy. Furthermore, we identified two VEGF-C/NRP-2-regulated genes, LAMP-2 and WDFY-1, that have previously been suggested to participate in autophagy and vesicular trafficking. Upregulation of WDFY-1 following VEGF-C or NRP-2 depletion contributes to cytotoxic drug-mediated cell death. Together, these data suggest a link between the VEGF-C/NRP-2 axis and cancer cell survival despite the presence of chemotherapy-induced stress. Effective targeting of this pathway may lead to the development of new cancer therapies. Cancer Res; 73(1); 160–71. ©2012 AACR.
Optimizing semantic MEDLINE for translational science studies using semantic web technologies
Zhang, Yuji , Jiang, Guoqian , Tao, Cui , Bouamrane, Matt-Mouley , Chute, Christopher G.

Mayo Clinic

Proceedings of the 2nd international workshop on Managing interoperability and compleXity in health systems | November 7, 2012 | Volume: No volume available | Issue: No issue available | Pages: 53-58

10.1145/2389672.2389683 Get It

SUMOylation of the small GTPase ARL-13 promotes ciliary targeting of sensory receptors
Ling, Kun , Hu, Jinghua , Li, Yujie , Zhang, Qing , Wei, Qing , Zhang, Yuxia

Mayo Clinic

Journal of Cell Biology | November 6, 2012 | Volume: 199 | Issue: 4 | Pages: 589-598

10.1083/jcb.201203150 | PMID 23128241 Get It

Primary cilia serve as cellular antenna for various sensory signaling pathways. However, how the sensory receptors are properly targeted to the ciliary surface remains poorly understood. Here, we show that UBC-9, the sole E2 small ubiquitin-like modifier (SUMO)-conjugating enzyme, physically interacts with and SUMOylates the C terminus of small GTPase ARL-13, the worm orthologue of ARL13B that mutated in ciliopathy Joubert syndrome. Mutations that totally abolish the SUMOylation of ARL-13 do not affect its established role in ciliogenesis, but fail to regulate the proper ciliary targeting of various sensory receptors and consequently compromise the corresponding sensory functions. Conversely, constitutively SUMOylated ARL-13 fully rescues all ciliary defects of arl-13–null animals. Furthermore, SUMOylation modification of human ARL13B is required for the ciliary entry of polycystin-2, the protein mutated in autosomal dominant polycystic kidney disease. Our data reveal a novel but conserved role for the SUMOylation modification of ciliary small GTPase ARL13B in specifically regulating the proper ciliary targeting of various sensory receptors.
Klf10 inhibits IL‐12p40 production in macrophage colony‐stimulating factor‐induced mouse bone marrow‐derived macrophages
Zhang, Wei , Wang, Xuelian , Xia, Xiaoping, Suo, Shanshan, Guo, Jing , Cao, Wenqiang , Cai, Zhijian , Hui, Zhaoyuan , Subramaniam, Malayannan , Spelsberg, Thomas C., Wang, Jianli , Wang, Lie , Liu, Xia , Li, Min , Cao, Wenqiang

Mayo Clinic

European Journal of Immunology | October 12, 2012 | Volume: 43 | Issue: 1 | Pages: 258-269

10.1002/eji.201242697 | PMID 23065757 Get It

Bone marrow‐derived macrophages (BMMs) treated with granulocyte‐macrophage colony‐stimulating factor (GM‐CSF) or macrophage colony‐stimulating factor (M‐CSF), differentiate into GM‐CSF‐induced mouse bone marrow‐derived macrophages (GM‐BMMs) or M‐CSF‐induced mouse bone marrow‐derived macrophages (M‐BMMs), which have an M1 or M2 profile, respectively. GM‐BMMs produce large amounts of proinflammatory cytokines and mediate resistance to pathogens, whereas M‐BMMs produce antiinflammatory cytokines that contribute to tissue repair and remodeling. M‐BMMs stimulated with lipopolysaccharide (LPS) are in an antiinflammatory state, with an IL‐12lowIL‐10high phenotype. However, the regulation of this process remains unclear. Klf10 belongs to the family of Krüppel‐like transcription factors and was initially described as a TGF‐β inducible early gene 1. IL‐12p40 is upregulated in LPS‐stimulated M‐BMMs from Klf10‐deficient mice, but downregulated during Klf10 overexpression. Klf11, another member of the Krüppel‐like factor family, can also repress the production of IL‐12p40. Furthermore, Klf10 binds to the CACCC element of the IL‐12p40 promoter and inhibits its transcription. We have therefore identified Klf10 as a transcription factor that regulates the expression of IL‐12p40 in M‐BMMs.
Protein tyrosine phosphatase SHP2 regulates TGF‐β1 production in airway epithelia and asthmatic airway remodeling in mice
Qin, Xuejun , Zhang, X., Qiu, Zhancheng, Wang, Ping Li, Li, Yongwang , Li, W., Xie, Qiang-min , Ke, Yuehai , Lee, J. J, Shen, Hua , Zhang, Guanxiong

Mayo Clinic

Allergy | October 11, 2012 | Volume: 67 | Issue: 12 | Pages: 1547-1556

10.1111/all.12048 | PMID 23057634 Get It

AbstractBackgroundTransforming growth factor (TGF)‐β1 produced in airway epithelia has been suggested as a contributor to the airway remodeling observed in asthma patients. The protein tyrosine phosphatase SHP2 is a demonstrable modulator of TGF‐β1 production and thus a potential regulator of airway remodeling.ObjectivesTo define the signal event by which SHP2 regulates asthmatic responses in airway epithelial cells by using a mouse model of experimental OVA‐induced airway remodeling.MethodsThe airways of Shp2flox/flox mice were infected with recombinant adenovirus vectors expressing a Cre recombinase–green fluorescence protein (GFP) fusion protein as part of allergen provocation studies using mice sensitized with ovalbumin (OVA) and repeatedly challenged with OVA. Several endpoint pathologies were assessed, including airway hyper‐responsiveness (AHR), lung inflammatory score, peribronchial collagen deposition, and α‐smooth muscle actin (SMA) hyperplasia. In vitro studies using airway epithelial cells (BEAS‐2B) were used to investigate the role of SHP2 in the regulation of pulmonary remodeling events, including the expression of collagen, α‐SMA, and TGF‐β1.ResultsChronic OVA challenges in wild‐type mice resulted in airway remodeling and lung dysfunction (e.g., increased inflammatory scores, collagen deposition (fibrosis), smooth muscle hyperplasia, and a significant increase in AHR). These endpoint pathology metrics were each significantly attenuated by conditional shp2 gene knockdown in airway epithelia. In vitro studies using BEAS‐2B cells also demonstrated that the level of TGF‐β1 production by these cells correlated with the extent of shp2 gene expression.ConclusionsSHP2 activities in airway epithelial cells appear to modulate TGF‐β1 production and, in turn, regulate allergic airway remodeling following allergen provocation.Clinical ImplicationsOur findings identify SHP2 as a previously underappreciated contributor to the airway remodeling and lung dysfunction associated with allergen challenge. As such, SHP2 represents a potentially novel therapeutic target for the treatment of asthmatics.Capsule summaryAirway epithelial protein tyrosine phosphatase SHP2 appears to modulate TGF‐β1 activities as part of one or more cellular pathways leading to regulating the airway remodeling and lung dysfunction occurring in mouse models of allergic respiratory inflammation.