Citations

Clear

28 citation(s) found for "Chen, Quan".

Simulation‐free workflow for lattice radiation therapy using deep learning predicted synthetic computed tomography: A feasibility study
Yu, Nathan Y. , Ashman, Jonathan B. , Toesca, Diego Santos, Deufel, Christopher L. , Duan, Jingwei , Chen, Quan , Rong, Yi , Chen, Quan , Ahmed, Safia K. , Duan, Jingwei , Rong, Yi , Toesca, Diego A.S. , Zhu, Libing , Grams, Michael P.

Mayo Clinic

Journal of Applied Clinical Medical Physics | June 12, 2025 | Volume: 26 | Issue: 7 | Pages: No page available

10.1002/acm2.70137 | PMID 40504103 Get It

Abstract Purpose Lattice radiation therapy (LRT) is a form of spatially fractionated radiation therapy that allows increased total dose delivery aiming for improved treatment response without an increase in toxicities, commonly utilized for palliation of bulky tumors. The LRT treatment planning process is complex, while eligible patients often have an urgent need for expedited treatment start. In this study, we aimed to develop a simulation‐free workflow for volumetric modulated arc therapy (VMAT)‐based LRT planning via deep learning‐predicted synthetic CT (sCT) to expedite treatment initiation. Methods Two deep learning models were initially trained using 3D U‐Net architecture to generate sCT from diagnostic CTs (dCT) of the thoracic and abdomen regions using a training dataset of 50 patients. The models were then tested on an independent dataset of 15 patients using image similarity analysis assessing mean absolute error (MAE) and structural similarity index measure (SSIM) as metrics. VMAT‐based LRT plans were generated based on sCT and recalculated on the planning CT (pCT) for dosimetric accuracy comparison. Differences in dose volume histogram (DVH) metrics between pCT and sCT plans were assessed using the Wilcoxon signed‐rank test. Results The final sCT prediction model demonstrated high image similarity to pCT, with a MAE and SSIM of 38.93 ± 14.79 Hounsfield Units (HU) and 0.92 ± 0.05 for the thoracic region, and 73.60 ± 22.90 HU and 0.90 ± 0.03 for the abdominal region, respectively. There were no statistically significant differences between sCT and pCT plans in terms of organ‐at‐risk and target volume DVH parameters, including maximum dose (Dmax), mean dose (Dmean), dose delivered to 90% (D90%) and 50% (D50%) of target volume, except for minimum dose (Dmin) and (D10%). Conclusion With demonstrated high image similarity and adequate dose agreement between sCT and pCT, our study is a proof‐of‐concept for using deep learning predicted sCT for a simulation‐free treatment planning workflow for VMAT‐based LRT.
Improving the Precision of Deep-Learning-Based Head and Neck Target Auto-Segmentation by Leveraging Radiology Reports Using a Large Language Model
Zhu, Libing , Rwigema, Jean‐Claude M. , Feng, Xue , Ansari, Bilaal, Duan, Jingwei , Rong, Yi , Chen, Quan , Chen, Quan , Rong, Yi , Feng, Xue , Duan, Jingwei , Ansari, Bilaal

Mayo Clinic

Cancers | June 10, 2025 | Volume: 17 | Issue: 12 | Pages: 1935

10.3390/cancers17121935 | PMID 40563585 Get It

Background/Objectives: The accurate delineation of primary tumors (GTVp) and metastatic lymph nodes (GTVn) in head and neck (HN) cancers is essential for effective radiation treatment planning, yet remains a challenging and laborious task. This study aims to develop a deep-learning-based auto-segmentation (DLAS) model trained on external datasets with false-positive elimination using clinical diagnosis reports. Methods: The DLAS model was trained on a multi-institutional public dataset with 882 cases. Forty-four institutional cases were randomly selected as the external testing dataset. DLAS-generated GTVp and GTVn were validated against clinical diagnosis reports to identify false-positive and false-negative segmentation errors using two large language models: ChatGPT-4 and Llama-3. False-positive ruling out was conducted by matching the centroids of AI-generated contours with the slice locations or anatomical regions described in the reports. Performance was evaluated using the Dice similarity coefficient (DSC), 95th percentile Hausdorff distance (HD95), and tumor detection precision. Results: ChatGPT-4 outperformed Llama-3 in accurately extracting tumor locations from the diagnostic reports. False-positive contours were identified in 15 out of 44 cases. The DSCmean of the DLAS contours for GTVp and GTVn increased from 0.68 to 0.75 and from 0.69 to 0.75, respectively, after the ruling-out process. Notably, the average HD95 value for GTVn decreased from 18.81 mm to 5.2 mm. Post ruling out, the model achieved 100% precision for GTVp and GTVn when compared with the results of physician-determined contours. Conclusions: The false-positive ruling-out approach based on diagnostic reports effectively enhances the precision of DLAS in the HN region. The model accurately identifies the tumor location and detects all false-negative errors.
Deep Learning-Based Synthetic CT for Personalized Treatment Modality Selection Between Proton and Photon Therapy in Thoracic Cancer
Zhu, Libing , Yu, Nathan Y. , Tegtmeier, Riley C. , Ashman, Jonathan B. , Duan, Jingwei , Chen, Quan , Rong, Yi , Chen, Quan , Anand, Aman, Duan, Jingwei , Anand, Aman Raj

Mayo Clinic

Cancers | May 4, 2025 | Volume: 17 | Issue: 9 | Pages: 1553

10.3390/cancers17091553 | PMID 40361479 Get It

Objectives: Identifying patients’ advantageous radiotherapy modalities prior to CT simulation is challenging. This study aimed to develop a workflow using deep learning (DL)-predicted synthetic CT (sCT) for treatment modality comparison based solely on a diagnostic CT (dCT). Methods: A DL network, U-Net, was trained utilizing 46 thoracic cases from a public database to generate sCT images predicting planning CT (pCT) scans based on the latest dCT, and tested on 15 institutional patients. The sCT accuracy was evaluated against the corresponding pCT and a commercial algorithm deformed CT (MdCT) based on Mean Absolute Error (MAE) and Universal Quality Index (UQI). To determine advantageous treatment modality, clinical dose-volume histogram (DVH) metrics and Normal Tissue Complication Probability (NTCP) differences between proton and photon treatment plans were analyzed on the sCTs via concordance correlation coefficient (CCC). Results: The AI-generated sCTs closely resembled those of the commercial deformation algorithm in the tested cases. The differences in MAE and UQI values between the sCT-vs-pCT and MdCT-vs-pCT were 19.38 HU and 0.06, respectively. The mean absolute NTCP deviation between sCT and pCT was 1.54%, 0.21%, and 2.36% for esophagus perforation, lung pneumonitis, and heart pericarditis, respectively. The CCC between sCT and pCT was 0.90 for DVH metrics and 0.97 for NTCP, indicating moderate agreement for DVH metrics and substantial agreement. Conclusions: Radiation oncologists can potentially utilize this personalized sCT based approach as a clinical support tool to rapidly compare the treatment modality benefit during patient consultation and facilitate in-depth discussion on potential toxicities at a patient-specific level.
Subsequent kilovoltage imaging‐based fiducial triangulation for intra‐fractional prostate motion monitoring and correction
Gevorkyan, Gevork S., Chen, Quan , Tegtmeier, Riley C. , Toesca, Diego Santos, Laughlin, Brady, Bashir, Sara, Welchel, Zachary James, Vargas, Carlos , Rwigema, Jean‐Claude M. , James, Sarah E. , Yu, Nathan Y. , Chen, Quan , Laughlin, Brady S. , Toesca, Diego A.S. , Gevorkyan, Gevork S. , Holmes, Jason , Rong, Yi

Mayo Clinic

Medical Physics | February 22, 2025 | Volume: 52 | Issue: 6 | Pages: 4008-4022

10.1002/mp.17703 | PMID 39985556 Get It

Abstract Background Inter‐fractional and intra‐fractional positioning and motion monitoring based on implanted fiducials through kilovoltage (kV) imaging is a cost‐effective approach to enhance intact prostate radiotherapy treatment accuracy. However, comprehensive studies for three‐dimensional (3D) position extraction and the corrective action threshold are lacking. Purpose To develop and verify a fiducial motion monitoring system with 3D position information based on triggered kV images taken during treatment delivery, and to comprehensively evaluate the recommended thresholds for corrective action during treatment. Methods An in‐house fiducial triangulation algorithm was developed to monitor fiducial positions using subsequent kV triggered images. The precision of fiducial triangulation and motion detection was validated on a pelvis phantom with four fiducial inserts. A retrospective study was conducted on prostate cancer patients who received either moderately hypofractionated radiotherapy (MHRT, n = 16) or stereotactic body radiotherapy (SBRT, n = 12), categorized by endo‐rectal balloon (ERB) use. Intra‐fractional positions relative to isocenter were computed, and these positions were analyzed in comparison to the original marker locations of the patient's treatment plan. A linear regression fit was used per fraction to determine correlation coefficients between motions in the left–right (LR), superior–inferior (SI), and anterior–posterior (AP) directions. Average fraction time (AFT) of treatment was reported based on the observed average time spent on steps in the workflow and the percentage of fiducials caught outside of the current two‐dimensional (2D) tolerance threshold of 5 mm. The observed 3D offsets were used to estimate AFT for various 3D tolerance thresholds. Results Overall, our triangulation method proved to be very precise for static cases, where phantom measurements revealed a fiducial position triangulation precision of mm for stationary targets, but had a spread of mm for targets with 1 mm of motion. Employing triangulation, true motion exceeding 5 mm was detected above 4.0 mm in magnitude 90.9% of the time, a noticeable improvement in comparison to the 28%–65% successful detection rate reported by 2D projection methods. Most detection errors were attributed to depth disparity. Similar to other reports, correlation coefficients for intra‐fractional motion generally indicated no LR/SI, no LR/AP, and weak positive SI/AP correlations for MHRT and SBRT patients. Offsets beyond a 3D tolerance threshold of 5 mm were observed at a rate of 4.25%–5.25%, while the 5 mm 2D out‐of‐tolerance catch‐rate was 1.6%. The AFT was 8.1–8.2 min using the 2D tolerance threshold of 5 mm. In comparison, the estimated AFT for the proposed 3D tolerance monitoring of offsets beyond 2–5 mm was slightly higher at 8.2–10.9 min due to the higher amount of out‐of‐tolerance instances for the higher precision intra‐fractional motion management. Conclusions Our study showcases a promising subsequent kV‐based triangulation method for intra‐fractional prostate motion monitoring. Acquiring 3D motion information results in higher out‐of‐tolerance catch‐rates particularly in the depth dimension of the kV images, which is perpendicular to the treatment beam. Failure to properly observe and catch these offsets would result in sub‐optimal conformality and accuracy of the dose delivery.
Outcomes of Brain Metastasis from Lung Cancer
Mobley, James M., Phillips, Kerry I., Reusch, Ellen , Reddy, Niharika , Magsam, Julia, McLouth, Laurie E. , Huang, Bin , Villano, John L. , Reddy, Niharika , Magsam, Julia B , Villano, John L , Mobley, James M, Phillips, Kerry I., Chen, Quan

Mayo Clinic

Cancers | January 14, 2025 | Volume: 17 | Issue: 2 | Pages: 256

10.3390/cancers17020256 | PMID 39858037 Get It

Background/Objectives: Little information has been published on patients diagnosed with brain metastasis secondary to lung cancer. Correlating outcome patterns (hospice care, lost to follow-up, death before hospice care or treatment) and specific characteristics of treated and untreated patients may identify subsets of patients who may benefit from treatment. Methods: We evaluated data from the Kentucky Cancer Registry and identified 284 cases who were diagnosed with brain metastasis secondary to non-small cell lung cancer (NSCLC) between 1 August 2016, and 31 December 2019. We evaluated type and timing of treatment received, as well as focused on those patients who did not receive treatment. For those patients who did not receive treatment, various characteristics that may have impacted their decision or ability to undergo follow-up were also evaluated. This included social history, disease burden, as well as oncology treatment timelines. Lastly, due to the high smoking rate in Kentucky, we conducted an analysis of patient tobacco use. Results: Our results show that 61 cases (21.8%) never received treatment for lung cancer with brain metastasis. Further analysis of the non-treated cases demonstrated that 19 cases (31.1%) never met with an oncology team while in the hospital or after discharge; 14 of the 61 cases (23.0%) were too sick to receive treatment and died prior to having the option of treatment; and 47 of the 61 cases (77.0%) may have had the option of treatment but declined. Conclusions: Historically, patients with brain metastases have faced poor prognoses and limited treatment options. However, advancements in systemic chemoimmunotherapy and targeted therapies have introduced new treatment possibilities, offering improved symptom control and the potential for prolonged survival. This analysis is crucial for identifying potential barriers to care, optimizing resource allocation, and guiding future research.
Development of an automated CBCT‐based simulation‐free platform for expedited palliative radiotherapy on a conventional linear accelerator
Tegtmeier, Riley C. , Clouser, Edward , Chen, Quan , Buckey, C, Chungbin, Suzanne J., Kutyreff, Christopher J. , Labbe, Amber L., Horning, Brooke L., Rule, William G., Vora, Sujay A., Chen, Quan , Clouser, Edward L, Buckey, Courtney R, Aguilar, Jose S, Rong, Yi , Kutyreff, Christopher J , Clouser, Edward Lee , Aguilar, Jose S., Labbe, Amber L., Rong, Yi

Mayo Clinic

Journal of Applied Clinical Medical Physics | December 23, 2024 | Volume: 26 | Issue: 4 | Pages: No page available

10.1002/acm2.14612 | PMID 39715307 Get It

AbstractBackgroundConventional approaches for emergent or expedited palliative radiotherapy (RT) involve the application of cumbersome vendor‐provided solutions and/or multiple patient appointments to complete the RT workflow within a compressed timeframe.PurposeThis report delineates the clinical development of an in‐house, semi‐automated Cone‐beam computed tomography (CBCT)‐based simulation‐free platform for expedited palliative RT on conventional linacs, intended to supplant existing techniques employed at this institution.MethodsThe internal software, termed SimFree Wizard (SFW), was engineered utilizing a C#‐based application programming interface integrated within the treatment planning system (TPS). Generated scripts were compiled as stand‐alone executables, with a graphical user interface (GUI) customized via an integrated development environment. The platform was conceived as a framework for accelerated CBCT‐based RT, bypassing the requirement for standard simulation imaging. SFW employs full automation where feasible to minimize user intervention, supplemented by graphical instructions for tasks requiring manual execution. During development, relevant temporal metrics from 10 end‐to‐end tests for palliative spine RT were quantified. User feedback was solicited via a simple questionnaire assessing the overall platform usability. Automated in‐house secondary verification software was developed for validation of the TPS‐calculated monitor units (MUs).ResultsThe mean duration for workflow execution was 41:42 ± 3:18 [mm:ss] (range ∼37–46 min). SFW satisfactorily generated simple, multi‐field CBCT‐based 3D treatment plans within seconds following delineation of the desired treatment area. User feedback indicated enhanced usability compared to previously employed solutions. Validation of the secondary verification software demonstrated accurate results for palliative spine RT and other simple cases wherein the dose calculation point resides in a predominantly homogenous medium.ConclusionA novel in‐house solution for expedited CBCT‐based RT was successfully developed, facilitating completion of the entire workflow within approximately 1‐hour or less for simple palliative/emergent scenarios. Overall, this application is expected to improve the quality and safety of palliative RT while greatly reducing workflow duration, thereby improving access to palliative care.
EXACT-Net: Framework for EHR-Guided Lung Tumor Auto-Segmentation for Non-Small Cell Lung Cancer Radiotherapy
Kelly, Katelyn, Feng, Xue , Luo, Yi , Zhang, Rui , Xu, Ziyue , Chen, Quan , Ding, Kai , Chen, Quan , Huang, Gaofeng , Feng, Xue , Xu, Ziyue , Ding, Kai , Hooshangnejad, Hamed , Huang, Gaofeng , Kelly, Katelyn

Mayo Clinic

Cancers | December 9, 2024 | Volume: 16 | Issue: 23 | Pages: 4097

10.3390/cancers16234097 | PMID 39682283 Get It

Background/Objectives: Lung cancer is a devastating disease with the highest mortality rate among cancer types. Over 60% of non-small cell lung cancer (NSCLC) patients, accounting for 87% of lung cancer diagnoses, require radiation therapy. Rapid treatment initiation significantly increases the patient’s survival rate and reduces the mortality rate. Accurate tumor segmentation is a critical step in diagnosing and treating NSCLC. Manual segmentation is time- and labor-consuming and causes delays in treatment initiation. Although many lung nodule detection methods, including deep learning-based models, have been proposed. Most of these methods still have a long-standing problem of high false positives (FPs). Methods: Here, we developed an electronic health record (EHR)-guided lung tumor auto-segmentation called EXACT-Net (EHR-enhanced eXACtitude in Tumor segmentation), where the extracted information from EHRs using a pre-trained large language model (LLM) was used to remove the FPs and keep the TP nodules only. Results: The auto-segmentation model was trained on NSCLC patients’ computed tomography (CT), and the pre-trained LLM was used with the zero-shot learning approach. Our approach resulted in a 250% boost in successful nodule detection using the data from ten NSCLC patients treated in our institution. Conclusions: We demonstrated that combining vision-language information in EXACT-Net multi-modal AI framework greatly enhances the performance of vision only models, paving the road to multimodal AI framework for medical image processing.
AI and machine learning in medical imaging: key points from development to translation
Samala, Ravi K. , Chan, Heang‐Ping , Petrick, Nicholas , Mahmood, Usman , Summers, Ronald M. , Yoshida, Hiroyuki , Huo, Zhimin, Vergara, Daniel , Mazurchuk, Richard, Grizzard, Kevin , Suzuki, Kenji , Armato, Samuel G. , Shukla-Dave, Amita , Chan, Heang-Ping , Mahmood, Usman , Summers, Ronald M , Deserno, Thomas M , Yoshida, Hiroyuki , Drukker, Karen , Huisman, Henkjan , Samala, Ravi K , Drukker, Karen , Shukla‐Dave, Amita , Sahiner, Berkman , Greenspan, Hayit , Tourassi, Georgia D. , Regge, Daniele , Näppi, Janne J. , Chen, Quan , Morra, Lia , Hadjiiski, Lubomir M.

Mayo Clinic

BJR|Artificial Intelligence | April 29, 2024 | Volume: 1 | Issue: 1 | Pages: No page available

10.1093/bjrai/ubae006 | PMID 38828430 Get It

Abstract Innovation in medical imaging artificial intelligence (AI)/machine learning (ML) demands extensive data collection, algorithmic advancements, and rigorous performance assessments encompassing aspects such as generalizability, uncertainty, bias, fairness, trustworthiness, and interpretability. Achieving widespread integration of AI/ML algorithms into diverse clinical tasks will demand a steadfast commitment to overcoming issues in model design, development, and performance assessment. The complexities of AI/ML clinical translation present substantial challenges, requiring engagement with relevant stakeholders, assessment of cost-effectiveness for user and patient benefit, timely dissemination of information relevant to robust functioning throughout the AI/ML lifecycle, consideration of regulatory compliance, and feedback loops for real-world performance evidence. This commentary addresses several hurdles for the development and adoption of AI/ML technologies in medical imaging. Comprehensive attention to these underlying and often subtle factors is critical not only for tackling the challenges but also for exploring novel opportunities for the advancement of AI in radiology.
Artificial intelligence in medicine: mitigating risks and maximizing benefits via quality assurance, quality control, and acceptance testing
Mahmood, Usman , Chan, Heang‐Ping , Drukker, Karen , Samala, Ravi K. , Vergara, Daniel , Petrick, Nicholas , Huo, Zhimin, Summers, Ronald M. , Cha, Kenny H, Grizzard, Kevin , Yoshida, Hiroyuki , Mazurchuk, Richard, Suzuki, Kenji , Armato, Samuel G. , Chan, Heang-Ping , Drukker, Karen , Samala, Ravi K , Vergara, Daniel , Petrick, Nicholas , Summers, Ronald M , Deserno, Thomas M , Shukla‐Dave, Amita , Chen, Quan , Greenspan, Hayit , Sahiner, Berkman , Cha, Kenny H, Tourassi, Georgia D. , Näppi, Janne J. , Regge, Daniele , Morra, Lia , Huisman, Henkjan , Hadjiiski, Lubomir M.

Mayo Clinic

BJR|Artificial Intelligence | March 4, 2024 | Volume: 1 | Issue: 1 | Pages: No page available

10.1093/bjrai/ubae003 | PMID 38476957 Get It

Abstract The adoption of artificial intelligence (AI) tools in medicine poses challenges to existing clinical workflows. This commentary discusses the necessity of context-specific quality assurance (QA), emphasizing the need for robust QA measures with quality control (QC) procedures that encompass (1) acceptance testing (AT) before clinical use, (2) continuous QC monitoring, and (3) adequate user training. The discussion also covers essential components of AT and QA, illustrated with real-world examples. We also highlight what we see as the shared responsibility of manufacturers or vendors, regulators, healthcare systems, medical physicists, and clinicians to enact appropriate testing and oversight to ensure a safe and equitable transformation of medicine through AI.
Contour subregion error detection methodology using deep learning auto‐segmentation
Duan, Jingwei , Bernard, Mark E. , Castle, J. , Johnson, Jeremiah D. , Chen, Quan , Duan, Jingwei , Rong, Yi , Feng, Xue

Mayo Clinic

Medical Physics | October 4, 2023 | Volume: 50 | Issue: 11 | Pages: 6673-6683

10.1002/mp.16768 | PMID 37793103 Get It

AbstractBackgroundInaccurate manual organ delineation is one of the high‐risk failure modes in radiation treatment. Numerous automated contour quality assurance (QA) systems have been developed to assess contour acceptability; however, manual inspection of flagged cases is a time‐consuming and challenging process, and can lead to users overlooking the exact error location.PurposeOur aim is to develop and validate a contour QA system that can effectively detect and visualize subregional contour errors, both qualitatively and quantitatively.Methods/MaterialsA novel contour subregion error detection (CSED) system was developed using subregional surface distance discrepancies between manual and deep learning auto‐segmentation (DLAS) contours. A validation study was conducted using a head and neck public dataset containing 339 cases and evaluated according to knowledge‐based pass criteria derived from a clinical training dataset of 60 cases. A blind qualitative evaluation was conducted, comparing the results from the CSED system with manual labels. Subsequently, the CSED‐flagged cases were re‐examined by a radiation oncologist.ResultsThe CSED system could visualize the diverse types of subregional contour errors qualitatively and quantitatively. In the validation dataset, the CSED system resulted in true positive rates (TPR) of 0.814, 0.800, and 0.771; false positive rates (FPR) of 0.310, 0.267, and 0.298; and accuracies of 0.735, 0.759, and 0.730, for brainstem and left and right parotid contours, respectively. The CSED‐assisted manual review caught 13 brainstem, 19 left parotid, and 21 right parotid contour errors missed by conventional human review. The TPR/FPR/accuracy of the CSED‐assisted manual review improved to 0.836/0.253/0.784, 0.831/0.171/0.830, and 0.808/0.193/0.807 for each structure, respectively. Further, the time savings achieved through CSED‐assisted review improved by 75%, with the time for review taking 24.81 ± 12.84, 26.75 ± 10.41, and 28.71 ± 13.72 s for each structure, respectively.ConclusionsThe CSED system enables qualitative and quantitative detection, localization, and visualization of manual segmentation subregional errors utilizing DLAS contours as references. The use of this system has been shown to help reduce the risk of high‐risk failure modes resulting from inaccurate organ segmentation.