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Abstract 3931: Immune cell profile changes in patients treated with tarlatamab for extensive stage small cell lung cancer in real world practice.
Prasad, Dhauna Karam, Corraes, Andre De Menezes Silva, Gupta, Malvika , Ma, Audrey, Wu, Chen , Shao, Zuoyi, Reagan, K J, Kamal, Rayaan, Potter, Ashley , Al-Ajmi, Abdullah, Mina, Syeda A. , Taylor, Sykler J., Dimou, A., Parikh, K., Luce, A., Schwecke, Anna, Molina, Julian R , Mansfield, Aaron S., Holmes, Lucy , Dong, Haidong, Lin, Yi, Leventakos, Konstantinos , Corraes, Andre De Menezes Silva , Ma, Audrey, Shao, Zuoyi, Kamal, Rayaan, Al‐Ajmi, Abdullah, Hazim, Antonious , Shanshal, Mohammed , Molina, Julian R. , Mansfield, Aaron S., Smith, Katherine E. , Holmes, Lucy

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 3931-3931

10.1158/1538-7445.am2026-3931 Get It

Abstract Background: Tarlatamab, a Delta-like ligand (DLL3)/CD3-targeted bispecific T-cell engager (TCE) is FDA approved in patients (pts) with extensive stage small cell lung cancer (ES-SCLC), after progression on frontline chemoimmunotherapy. We aimed to evaluate the immune cell profile in pts who received this therapy in standard-of-care (SOC) practice with progression free survival (PFS) less than and greater than two months (mo). Methods: Patients who received tarlatamab at Mayo Clinic Rochester and consented to immuno phenotyping of blood are included in the present study. Immune phenotyping was performed on whole blood by flow cytometry and analyzed by Kaluza. Data analysis was performed with Microsoft Excel and PRISM. Results: Eighteen patients with median age 64 (range 37-79) were included in the study. 66% of our cohort were women and 83% had present or past history of smoking, with an average of 40 pack years (range 26-60). With a median follow-up of 2 months, the median PFS for the cohort was 1.5 mo (range 0.33-2.76 months). 61% (13/18) of patients had PFS <2mo. 39% (5/18) had PFS>2mo and of which, three patients had partial response with one maintaining stable disease and one patient with mixed response. At baseline (BL), there were no difference in T cell, CD4 or CD8 cell count between patients in the PFS<2mo and PFS>2mo groups. Patients with PFS<2mo had higher exhausted CD8 T cells compared to those in the PFS>2mo group (CD8+PD1+TIGIT+CD57+, PFS<3mo vs >3mo, cells/mL: 7.14±4.28, 1.58±1.37, p=0.009). Additionally, when analyzing the B-cell population, the PFS<2mo group had lower percentage of B cells compared to the group with PFS>2mo at baseline (6.0±7.5, 10.4±14, p=0.02). At day 7, the group with PFS<2mo had lower Treg compared to the group with PFS>2mo (2.88±1.38, 4.60±1.47, p=0.02). Also, the PFS<2mo group had an increase of B cells compared to the group with PFS>2mo at day 7(<2mo vs >2mo: 10.0±14, 4.37±3.07, p=0.04). Finally, the group with PFS>2mo had decrease in total monocytes (mono), classical mono, and immunosuppressive cells (PFS<2mo vs >2mo, Mono: 340±347, 253±106, p=0.04. Classical mono: 305±283, 155±109, p=0.02. CD14+HLA-DRneg: 105.8±96, 12±39, p=0.03) compared to the group with PFS<2mo by day 7. While no changes were seen between BL and day 7 for intermediate mono in PFS<2mo group, PFS>2mo group had decreased post treatment intermediate monocytes (BL vs day 7, cells/mL, intermed mono: 32.5±15,17.7±6.2, p=0.03). Conclusion: In this study investigating the SOC outcomes of tarlatamab, early progression was associated with higher presence of exhausted CD8 T cells, B cells, and immunosuppressive monocytes. Analysis of additional patients will be shared at AACR meeting. Citation Format: Dhauna Karam Prasad, Andre De Menezes Silva Corraes, Malvika Gupta, Audrey Ma, Chen Wu, Zuoyi Shao, Kevin Reagan, Rayaan Kamal, Ashley Potter, Abdullah Al-Ajmi, Syeda Mina, Sykler J. Taylor, Antonious Hazim, Anastasios Dimou, Kaushal Parikh, Mohammed Shanshal, Ailsa Luce, Anna Schwecke, Julian Molina, Aaron Mansfield, Katherine Smith, Lucy Holmes, Haidong Dong, Yi Lin, Konstantinos Leventakos. Immune cell profile changes in patients treated with tarlatamab for extensive stage small cell lung cancer in real world practice [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 3931.
Abstract 2107: Genomic landscape of melanoma brain metastases: Real-world analysis and comparison with public melanoma cohorts.
Parker, Joseph B., Hamilton, Jakob , Adeoye, Oluwatayo , Kamatham, Saivaishnavi , Tan, Winston, Dimou, Anastasios, Block, Matthew S. , Markovic, Svetomir, Seetharam, ­Mahesh , Dronca, Roxana , Chen, R., Elantably, Dina , Abdelhakeem, Ahmed , Tan, Winston, Dudek, Arkadiusz Z. , Dimou, Anastasios , McWilliams, Robert R. , Markovic, Svetomir

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 2107-2107

10.1158/1538-7445.am2026-2107 Get It

Abstract Background: Melanoma brain metastases (MBM) represent a biologically distinct and clinically aggressive subset of melanoma. Comprehensive molecular characterization focused on intracranial disease remains limited. We aimed to define the genomic landscape of MBM and compare these findings with public melanoma datasets. Methods: We retrospectively identified 166 patients with histologically confirmed MBM across Mayo Clinic tri-sites (2011-2025). Molecular testing was performed in 123 patients (74.1%). Comprehensive next-generation sequencing (NGS; ≥300-gene platforms including Tempus, FoundationOne, Caris, NeoGenomics, and MayoComplete Solid Tumor Panel) was available in 41 patients (24.7%). Intermediate-depth profiling using the MayoComplete Melanoma Panel (17 genes) was performed in 21 patients (12.7%), and a targeted 5-gene melanoma driver panel (BRAF, NRAS, KIT, GNAQ, GNA11) in 52 patients (31.3%). cfDNA-based NGS was available in 12 patients (7.2%). Genomic alterations were summarized and benchmarked against TCGA-SKCM and MSK-IMPACT datasets via cBioPortal. We considered assay heterogeneity, as Mayo panels varied in sequencing depth and CNV coverage, and hybrid-capture platforms often under-detect TERT promoter hotspots. Results: Patients had a median age of 67 years, and 63% were male. BRAF mutations occurred in 48.8% (BRAF V600E/K 41.6%; non-V600 7.2%). Additional MAPK alterations included NRAS (17.5%), KIT (5.4%), GNAQ (1.2%), and GNA11 (0.6%). In the comprehensive NGS subset, tumor-suppressor alterations included CDKN2A (17.5%), PTEN (7.8%), NF1 (9.0%), TP53 (8.4%), and TERT promoter mutations (22.9%). Median TMB was 11.55 mut/Mb (IQR 5.0-25.5). Co-alterations included BRAF+CDKN2A (7.2%), BRAF+PTEN (4.2%), NRAS+CDKN2A (4.2%), NRAS+PTEN (1.2%), and CDKN2A+PTEN (3.6%); overall, 18.1% harbored MAPK driver + tumor-suppressor co-alterations. Compared with TCGA and MSK cohorts, MBM showed similar MAPK driver frequencies but fewer MAPK + tumor-suppressor co-alterations and lower CDKN2A, PTEN, and TP53 disruption, alongside a more prevalent of TERT promoter mutations (22.9% vs 7% and 2.1%), which may partly reflect coverage differences. Conclusion: MBM exhibit a distinct genomic profile characterized by reduced tumor-suppressor loss, fewer MAPK-tumor-suppressor co-alterations, and higher prevalence of TERT promoter mutations. While assay heterogeneity limits direct cross-cohort comparisons, these patterns suggest potentially distinct biological features of intracranial melanoma and underscore the need for harmonized, MBM-specific molecular studies to guide therapeutic development. Citation Format: Dina Elantably, Joseph B. Parker, Jakob Hamilton, Ahmed Abdelhakeem, Oluwatayo Adeoye, Saivaishnavi Kamatham, Winston Tan, Arkadiusz Z. Dudek, Anastasios Dimou, Matthew S. Block, Robert McWilliams, Svetomir Markovic, Mahesh Seetharam, Roxana Dronca, Ruqin Chen. Genomic landscape of melanoma brain metastases: Real-world analysis and comparison with public melanoma cohorts [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 2107.
Abstract 2061: MicroRNAs targeting tumor suppressor GRK2: Novel potential therapeutic strategies for restraining MALT1-dependent DLBCL.
Cheng, Jing, Smyers, Mei , Trotta, Matt, Chandran, Uma , Xia, Min, Melnick, Ari M., McAllister-Lucas, Linda M., Carleton, Neil M. , Maurer, Lisa M. , Melnick, Ari , Lucas, Peter C. , McAllister‐Lucas, Linda M.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 2061-2061

10.1158/1538-7445.am2026-2061 Get It

Abstract Introduction/Objectives: The CARMA1-BCL10-MALT1 (CBM) signalosome plays crucial role in mediating antigen receptor-induced activation of NF-κB transcription factor and subsequent lymphocyte activation. The effector protein of the signalosome, MALT1, functions both as a scaffold to recruit downstream NF-κB signaling machinery, and as a protease to cleave and inactivate multiple substrates including negative regulators of NF-κB. Constitutive MALT1 activation, which can occur as a result of gain-of-function mutations of the B cell receptor, CARMA1, BCL10 or chromosomal translocation involving the MALT1 gene, underlies the pathogenesis of multiple lymphoid malignancies including activated B-cell type-diffuse large B-cell lymphoma (ABC-DLBCL) and MALT lymphoma. We previously identified G-protein-coupled receptor kinase 2 (GRK2) as a tumor suppressor in MALT1-dependent lymphomas which binds MALT1 and inhibits MALT1 scaffolding and proteolytic activities. Accordingly, GRK2 mRNA levels are markedly lower in a subset of DLBCL tumors compared to normal B cells and lower GRK2 level in ABC-DLBCL is associated with reduced patient survival. In current study, we sought to investigate the mechanism of how GRK2 levels are regulated in ABC-DLBCL. Methods/Results: Using DICER1 depleted cells, we showed that globally impaired miRNA processing leads to increased GRK2 protein levels. We then conducted bioinformatic analyses of patient tumor samples and performed screening via microRNA Data Integration Portal to identify microRNAs that target GRK2 in ABC-DLBCL. Further GRK2 3’UTR reporter assay confirmed direct targeting of GRK2 by candidate miRNAs. ABC-DLBCL cell lines, OCI-LY3 and TMD8, which demonstrate reduced GRK2 mRNA expression compared to primary B cells, show elevated expression of candidate GRK2-targeting microRNAs. Stable overexpression of miR-125a, 125b, or 148b in OCI-LY3 or TMD8 cells led to reduced GRK2 expression, enhanced MALT1 activity and increased cell proliferation. Conversely, in vitro inhibition of candidate miRNAs using anti-miRNA Locked Nucleic Acids (LNA) inhibitors led to enhanced GRK2 expression, reduced MALT1 activity and decreased cell proliferation. Importantly, treatment of mice with inhibitors of miR-125b and miR-148b abrogates the growth of ABC-DLBCL xenograft tumors in vivo. Conclusion: We have identified miRNAs that negatively regulate GRK2 expression in ABC-DLBCL. These GRK2-targeting miRNAs serve a pro-tumorigenic role by promoting MALT1 oncoprotein’s scaffold and protease activity. Furthermore, inhibitors of these miRNAs can enhance GRK2 expression and thereby suppress MALT1 activity and MALT1-dependent tumor cell proliferation, both in vitro and in vivo. These studies suggest that microRNA inhibitors which enhance GRK2 expression could represent a novel approach for restraining MALT1-dependent lymphomagenesis. Citation Format: Jing Cheng, Mei Smyers, Matt Trotta, Neil M. Carleton, Lisa M. Maurer, Uma R. Chandran, Min Xia, Ari M. Melnick, Peter C. Lucas, Linda M. McAllister-Lucas. MicroRNAs targeting tumor suppressor GRK2: Novel potential therapeutic strategies for restraining MALT1-dependent DLBCL [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 2061.
Abstract 2942: Inhibition of stearoyl-CoA desaturase 1 (SCD1) by SSI-4 as a therapeutic strategy in non-small cell lung cancer.
Gonzales, Valeria Romina Salerno, Antal, Lauren, Turley, Tamiel Nichole, Copland, John A. , Gonzales, Valeria Salerno, Turley, Tamiel N.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 2942-2942

10.1158/1538-7445.am2026-2942 Get It

Abstract Lipid metabolism plays an important role in lung cancer growth, survival, and therapeutic resistance. Stearoyl-CoA desaturase 1 (SCD1), the enzyme that converts saturated fatty acids (SFAs) into monounsaturated fatty acids (MUFAs), represents a metabolic vulnerability since cancer cells depend on MUFAs for membrane biosynthesis, ER homeostasis, and alternative energy to glucose. SSI-4 (a.k.a MTI-301) is a selective SCD1 inhibitor currently in Phase I clinical evaluation for metastatic, unresectable, or refractory solid cancers, but its activity in non-small cell lung cancer (NSCLC) has not yet been characterized. To evaluate how NSCLC models respond to SCD1 blockade, we performed an initial screen of a panel of 17 human non-small cell lung cancer cell lines treated with 100 nM SSI-4 under defined serum conditions. Cell viability assays identified 9 responding cell lines, and dose-response studies confirmed IC50 values ranging from approximately 0.65 to 45.5 nM. Rescue experiments showed that adding oleic acid, an SCD1 regulated MUFA, reversed SSI-4-mediated growth inhibition, confirming mechanistically that this effect occurs through SCD1 blockade. Western blot analysis confirmed that SSI-4 treatment increased markers of endoplasmic reticulum (ER) stress and apoptosis in sensitive lines, consistent with disruption of lipid homeostasis. In contrast, non-responsive lines exhibited minimal induction of these stress pathways and retained viability despite treatment. Soft agar assays further showed that SSI-4 reduced anchorage-independent colony formation in responsive lines, indicating that SCD1 inhibition suppresses a key malignant growth property in these NSCLC models. Collectively, these findings demonstrate that SSI-4 selectively inhibits proliferation in a subset of NSCLC cells through an SCD1-dependent mechanism by reducing MUFA availability and activating stress and apoptotic signaling. This work establishes a framework for subsequent in vivo studies and lays the foundation for exploring SCD1 inhibition as a potential therapeutic strategy for patients with limited treatment options in NSCLC, while also advancing understanding of the mechanisms by which SCD1 supports tumor survival. Citation Format: Valeria Romina Salerno Gonzales, Lauren Antal, Tamiel Nichole Turley, John A. Copland III. Inhibition of stearoyl-CoA desaturase 1 (SCD1) by SSI-4 as a therapeutic strategy in non-small cell lung cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 2942.
Abstract 1248: Perspectives on cancer survivorship: Voices of family caregivers.
Bolajoko, Opeyemi , Melton, J. Joseph, Young, Mary Ellen , Odedina, Folakemi T.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 1248-1248

10.1158/1538-7445.am2026-1248 Get It

Abstract Background: Cancer survivorship requires significant contributions from family caregivers at home. This role can be burdensome because family members play a vital role in the physical, functional, and emotional well-being of patients diagnosed with cancer. Although optimum care throughout the care continuum requires significant caregiver support at home, family caregivers' contribution to survivorship care is usually neglected. We provide the preliminary outcomes of caregivers' challenges and experiences in providing care and survivorship support to Black cancer survivors. We also identified ways to provide support for family caregivers. Methods: This qualitative study obtained information from 8 caregivers who care for Black cancer survivors who have completed treatment in the United States. The study used a phenomenological design to obtain data from participants. In-depth interviews focused on participants' lived experiences caring for Black patients with cancer. The study captured caregivers' personal stories of how they dealt with diagnosis, feelings, emotions, reactions, understanding of the disease, prognosis, and treatment options and decision process, as well as survivorship of their care recipients. All interviews were video recorded and transcribed verbatim. The transcript of each participant's interview was reviewed, analyzed, and coded, with emerging themes interpreted. Results: The major cahllenges identified were (1) lack of knowledge of cancer, the disease and treatment course before the diagnoses; (2) home care burden, which include the challenges of combining care for a sick person at home with caring for other members of the family and taking care of domestic chores; (3) patient care navigation, including identifying healthcare professional for specialist care, adequate health insurances, scheduling doctors' appointment, transportation, insurance and treatment paperwork; (4) financial challenges, especially keeping up with job, family income reduction, increase out of pocket spendings, as well as expensive drugs and treatment co-pays. Most of the caregivers agreed that they neglected their personal health while caring for their care recipient. All caregivers wished they received more information and training on how to care for a patient with cancer. Possible solutions identified were care packets providing information on cancer and how to provide care at home, patient care navigation to social determinants of health and financial support programs, counselling for mental health and emotional support, peer support groups for caregivers, health checks, and a contact to call for support. Conclusion: Caring for cancer patients at home is very challenging; having a care packet and caregiving training is important to support survivorship and reduce the caregiving burden experienced by family caregivers. Citation Format: Opeyemi Oreoluwa Bolajoko, Jada Melton, Mary Ellen Young, Folakemi T. Odedina. Perspectives on cancer survivorship: Voices of family caregivers [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 1248.
Abstract 1184: IHC-based prognostic sub-stratification of ovarian endometrioid carcinoma.
Taengwa, Gamaliel , Atkinson, Hunter J., McCauley, Bryan M. , Armasu, Sebastian M. , Wang, Chen, Doherty, Jennifer A., Goode, Ellen L. , Köebel, Martin, Atkinson, Hunter J., Doherty, Jennifer A. , Harris, Holly R. , Winham, Stacey J.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 1184-1184

10.1158/1538-7445.am2026-1184 Get It

Abstract Ovarian endometrioid carcinoma (OEC) is the second most common histotype associated with the most favorable prognosis among ovarian carcinomas. Similar to endometrial carcinoma, OEC exhibit significant molecular diversity. We aimed to develop a practical immunohistochemical (IHC) prognosticator by integrating IHC biomarkers with clinical substage, and surgical outcomes. This multi-institutional study included participants with primary invasive OEC from the Alberta Cancer Registry (AOVT), Mayo Clinic, and Disease of the Ovary and their Evaluation Study (DOVE). Pathology review excluded misclassified high-grade serous and mesonephric carcinomas leaving 422 OEC cases (AOVT N=158; DOVE N=143; Mayo N=121) with available tumor biospecimens who did not receive neoadjuvant treatment. Clinical characteristics included age, stage, grade, residual disease and 5-year survival. Clinical risk group was defined by combining stage and residual disease: Low (FIGO stage IA/IB & no macroscopic disease), Intermediate (stage IC-II& no macroscopic disease), High (stage III/IV or macroscopic disease). Tissue microarrays were stained for TP53, PMS2, MSH6, PGR, and CTNNB1 using IHC and were scored by a single pathologist. Tumors were hierarchically categorized as TP53-abnormal (TP53abn)/PGR-loss, mismatch-repair deficient (MMRd, via PMS2 and MSH6), nuclear-CTNNB1 (nCTNNB1), or no-specific-immunohistochemical-profile (NSIP). Overall survival (OS) at 5 years was compared across clinical risk and biomarker groups using Cox regression, adjusted for age and site to generate hazard ratios (HR), and 5-year survival rates (5-YSR). High clinical risk group was associated with worse 5-year OS compared to low & intermediate risk (p<0.0001). Hierarchical IHC biomarker groups were also associated with 5-year OS, adjusted for age and study site (p<0.0001), with consistently worse survival for combined TP53abn/PGR-loss (n=17, HR=6.07, 95% CI 2.78-13.26), PGR-loss only (n=55, HR=4.17, 95% CI 2.19-7.94), TP53abn only (n=29, HR=2.04, 95% CI 0.85-4.90), and better survival for nuclear-CTNNB1 (n=146, HR=0.22, 95% CI 0.07-0.65) compared to NSIP (n=132). Within the low-risk group, MMRd, nCTNNB1, or NSIP had greater than 97% 5-YSR, while OEC with TP53abn/PGR-loss or PR-loss only had less than 75% 5-YSR. Within the intermediate group, only nCTNNB1 exceeded a 5-YSR of greater than 97%. Within the high-risk group, 5YSR for nCTNNB1 OEC was 90.9%, compared to only 16.7% for TP53abn/PGR-loss. This IHC-based algorithm refines prognosis beyond clinical substage. It identifies low-risk patients with unfavorable prognosis (TP53abn/PGRloss, PGR loss only) who may benefit from adjuvant therapy, and also patients with favorable prognosis within the intermediate group for whom adjuvant therapy could be de-escalated. Further patient selection for chemo vs. hormone therapy in the high-risk group may be improved by biomarkers. Citation Format: Gamaliel Taengwa, Hunter J. Atkinson, Bryan M. McCauley, Sebastian M. Armasu, Chen Wang, Jennifer A. Doherty, Holly R. Harris, Ellen L. Goode, Martin Koebel, Stacey J. Winham. IHC-based prognostic sub-stratification of ovarian endometrioid carcinoma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 1184.
Abstract 1183: Early ctDNA quantification by ctFE outperforms Max VAF for survival stratification across locally advanced and oligometastatic NSCLC treated with radiotherapy.
Hashmi, Ayesha , Linford, Jessica , Parikh, K., Ben-Shachar, Rotem, Guittar, John , Pillai, Malvika , Patel, Jyoti D., Bergsagel, Matteo , Olivier, K., Park, Sean S., Owen, Dawn, Lee, K.N. , Sherry, Alex, Morgensztern, Daniel , Ferreira, Bruna Pellini, Vlacich, Gregory , Chaudhuri., Aadel A., Chauhan, Pradeep S. , Ben‐Shachar, Rotem , Semenkovich, Nicholas P. , Routman, David M. , Mansfield, Aaron S. , Govindan, Ramaswamy , Robinson, Clifford G. , Bergom, Carmen , Waqar, Saiama N , Chaudhuri, Aadel A.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 1183-1183

10.1158/1538-7445.am2026-1183 Get It

Abstract Background: Personalizing chemoradiotherapy (chemoRT) for locally advanced non-small cell lung cancer (LA-NSCLC) is limited by the lack of early biomarkers that inform response during treatment. Current circulating tumor DNA (ctDNA) molecular residual disease assays predict post-treatment outcomes but lack mid-treatment utility. ctDNA burden estimation has traditionally relied on variant-centric metrics such as maximum variant allele fraction (Max VAF), which rely on mutation-specific signals and may be confounded by histology-dependent shedding variability, allelic imbalance, and clonal hematopoiesis. Here we present circulating tumor fraction estimate (ctFE), a machine-learning composite score that integrates VAF distributions, copy-number alterations, and germline B-allele frequency deviations to approximate global tumor burden using a widely available, tumor-naïve clinical platform. Methods: A burden-based ctFE threshold was derived using pre-treatment plasma from a prospective phase II clinical trial of MR-guided hypofractionated chemoRT (LA-WU, n=26), locked, and applied unchanged to early mid-treatment samples (day 10-14). To test scalability and generalizability, its prognostic performance was validated in two real-world cohorts: 94 LA-NSCLC patients receiving definitive chemoRT (LA-RW) and 309 oligometastatic NSCLC patients receiving consolidative RT (OM-RW). ctFE and Max VAF were compared as continuous predictors across cohorts. Results: ctFE consistently outperformed Max VAF. In LA-WU, pre-treatment ctFE was associated with overall survival (OS HR=1.15, p=0.04) and progression-free survival (PFS HR=1.84, p=0.009), whereas Max VAF was not. Mid-treatment ctFE remained prognostic for PFS (HR=1.14, p=0.026). Early ctFE dynamics defined three molecular response groups with marked OS separation: consistently low, responder, and nonresponder groups (median OS 60.8 vs 13.0 vs 2.9 months, respectively; p<0.001). In multivariable models including both biomarkers, higher ctFE remained independently associated with worse survival in LA-RW (OS HR=1.88, p=0.010) and OM-RW (OS HR=1.37, p=0.040; PFS HR=1.45, p=0.008), whereas Max VAF did not. The locked ctFE threshold stratified OS across all cohorts (LA-WU HR=5.93; LA-RW HR=9.08; OM-RW HR=2.26; all p<0.001). Conclusion: ctFE provides clinically meaningful pre- and mid-treatment risk stratification and consistently outperforms Max VAF across locally advanced and oligometastatic NSCLC cohorts. We show that ctFE is a biologically informative, clinically generalizable and scalable ctDNA burden metric measurable using a tumor-naïve, off-the-shelf assay, supporting its practical utility in biomarker-adapted radiotherapy strategies. Citation Format: Ayesha Hashmi, Jessica Linford, Pradeep S. Chauhan, Kaushal Parikh, Rotem Ben-Shachar, John Guittar, Malvika Pillai, Jyoti Patel, Matteo Bergsagel, Nicholas P. Semenkovich, Kenneth R. Olivier, Sean S. Park, Dawn Owen, David M. Routman, Katie N. Lee, Alex D. Sherry, Aaron S. Mansfield, Daniel Morgensztern, Ramaswamy Govindan, Clifford G. Robinson, Carmen Bergom, Saiama N. Waqar, Bruna Pellini Ferreira, Gregory R. Vlacich, Aadel A. Chaudhuri. Early ctDNA quantification by ctFE outperforms Max VAF for survival stratification across locally advanced and oligometastatic NSCLC treated with radiotherapy [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 1183.
Abstract 1200: Spatially resolved tumor-cell MHC class II shapes adaptive immunity and therapeutic response in triple-negative breast cancer.
Deshmukh, Sachin Kumar, Susiriwatananont, Thiti , Eiamprapaporn, Panuch , Wu, Bogang , JOENSUU, H, Leon-Ferre, Roberto A, Zahrieh, D. M., Boughey, JC , Ingle, James Newell, Couch, FJ, Wu, Sharon, Sledge, G. W., Goetz, M. P., Knutson, KL, Thompson, E Aubrey, Chumsri, Saranya , Liu, Yi , Deshmukh, Sachin Kumar , Leon‐Ferre, Roberto A. , Zahrieh, David , Gandhi, Shipra , Lustberg, Maryam B. , Goetz, Matthew P. , Knutson, Keith L. , Thompson, E. Aubrey , Carter, Jodi M.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 1200-1200

10.1158/1538-7445.am2026-1200 Get It

Abstract Background: MHC class II molecules are normally restricted to professional antigen-presenting cells. Prior TNBC studies have focused on immune-compartment MHC-II. Using spatial transcriptomics, we recently identified aberrant tumor-cell MHC-II expression. Here, we characterized the immune architecture surrounding HLA-DRA-expressing tumor cells. Methods: High-plex single-cell spatial transcriptomics (CosMxTM SMI) was performed on treatment-naïve TNBC (Mayo TMA, n=65) and two neoadjuvant pembrolizumab cohorts (Mayo n=8; Emory n=4). Spatial neighborhoods were mapped relative to HLA-DRA-high tumor cells. Differential expression and adaptive immune gene-set scores were evaluated. Clinical relevance was assessed using FinXX (n=114), I-SPY2 (n=364), and Caris CODEai (n=3,662). Results: HLA-DRA-high tumor regions showed significant enrichment of adaptive immune subsets within ≤50 μm, including B cells, CD8+ T cells, NK cells, macrophages, and plasmacytoid dendritic cells. In pembrolizumab-treated cohorts, responders exhibited higher proportions of HLA-DRA-high tumor cells and greater numbers of B cells, plasmablasts, CD4+ and CD8+ T cells, and macrophages near tumor cells. Responders’ tumors showed upregulation of antigen-presentation machinery, B-cell/plasma-cell programs, CXCL13, and NOTCH3/DLL1. Across I-SPY2 and FinXX, higher HLA-DRA correlated with pathologic complete response and improved survival. In CODEai TNBC, high HLA-DRA expression correlated with higher CXCL13 (median TPM 7.5 vs. 1.1, q<0.05) and longer overall survival (24.2 vs. 18.5 months, HR 0.77, 95% CI 0.71-0.83, p<0.0001). This association was TNBC-specific. High CXCL13 also predicted improved survival (26.6 vs. 16.5 months, HR 0.64, 95% CI 0.59-0.69, p<0.0001). Conclusions: Tumor-cell HLA-DRA expression defines a highly organized adaptive immune niche enriched with B cells and activated T-cell populations in close proximity. Adaptive immune programs—including enhanced antigen presentation and CXCL13-mediated B-cell/plasma-cell pathways—consistently associate with improved outcomes across TNBC cohorts treated with chemotherapy and immune checkpoint blockade. Aberrant tumor-cell MHC-II expression may contribute to antitumor immunity and warrants further investigation as a potential therapeutic target. Citation Format: Yi Liu, Sachin Kumar Deshmukh, Thiti Susiriwatananont, Panuch Eiamprapaporn, Bogang Wu, Heikki Joensuu, Roberto A. Leon-Ferre, David Zahrieh, Judy C. Boughey, James Newell Ingle, Fergus J. Couch, Sharon Wu, Shipra Gandhi, Maryam Lustberg, George W. Sledge, Matthew P. Goetz, Keith L. Knutson, E Aubrey Thompson, Jodi Carter, Saranya Chumsri. Spatially resolved tumor-cell MHC class II shapes adaptive immunity and therapeutic response in triple-negative breast cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 1200.
Abstract 5664: Targeting cholangiocarcinoma with ferroptosis-inducing siRNA-based nanotherapeutics.
Classon, Peyton, Carlson, Danielle M. , Millender, Jayla T. , Ilyas, Sumera, Smoot, Rory L., Patel, Tushar, Gores, Gregory J., Povero, Davide , Carlson, Danielle Marie , Yan, Irene K. , Ilyas, Sumera I. , Smoot, Rory L. , Gores, Gregory J.

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 5664-5664

10.1158/1538-7445.am2026-5664 Get It

Abstract Background: Cholangiocarcinoma (CCA) is a highly lethal epithelial cell malignancy of the hepatic biliary tract. Efficacy of current standard-of-care therapy is limited. Ferroptosis, an iron-catalyzed, caspase-independent cell death driven by phospholipid peroxidation, has emerged as a novel therapeutic target. Our goal is to develop a tumor-selective therapeutic approach targeting ferroptosis in CCA using siRNA-based nanotherapeutics. Materials & Methods: Milk-derived nanovesicles (lactosomes) coated with EpCAM aptamer and packaged with siRNA against Glutathione Peroxidase 4 (siGPX4-lactosomes) and Ferroptosis Suppressor Protein 1 (siFSP1-lactosomes), were used to induce ferroptosis in murine CCA cells (FAC) and in syngeneic liver orthotopic CCA-bearing mice. In vitro, lactosome uptake and efficacy were assessed by fluorescence-based, cell-viability and molecular biology assays. In vivo, target engagement, tissue distribution, safety and efficacy were assessed. Results: EpCAM (epithelial cell adhesion molecule expressed on CCA cells)-coated lactosomes showed robust uptake by FAC cells in a EpCAM-dependent manner. EpCAM knockdown via siRNA reduced lactosome uptake, confirming aptamer selectivity. Dose-dependent siGPX4/siFSP1-lactosome treatment led to GPX4/FSP1 knockdown and induced ferroptotic cell death in up to 60% of FAC cells after 72 hours (p<0.001 vs. siNC). In CCA-bearing mice, intravenous administration of siRNA lactosomes was well-tolerated with no liver or systemic toxicity observed and demonstrated robust tumor distribution compared to non-tumorous tissues. Efficacy studies demonstrated that siGPX4/siFSP1-lactosomes significantly reduced intratumor Gpx4 and FSP1 mRNA expression by 40-60% and induced significant upregulation of ferroptosis markers Ptgs2 and Acsl4 (p<0.01 vs. siNC). Ferroptosis in siRNA-lactosome treated tumors was confirmed by immunohistochemistry for phospholipid peroxidation markers oxPAPC and 4-HNE. Additionally, proliferation marker Ki67 was significantly downregulated in siGPX4/siFSP1-lactosome treated tumors (p<0.05 vs. siNC), indicating ferroptosis-mediated tumor suppression. Importantly, siGPX4/siFSP1-lactosomes reduced tumor burden and expression of CCA markers CK19/7 in treated mice, as compared to control mice. Conclusions: siRNA-based nanotherapeutics targeting CCA can effectively and safely induce ferroptosis in vitro and in vivo, representing a potential therapeutic strategy for CCA treatment. Citation Format: Peyton Classon, Danielle Marie Carlson, Jayla Millender, Irene Yan, Sumera Ilyas, Rory L. Smoot, TUSHAR PATEL, Gregory J. Gores, Davide Povero. Targeting cholangiocarcinoma with ferroptosis-inducing siRNA-based nanotherapeutics [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 5664.
Abstract 985: Anticancer efficacy of tricarbonylperrhenato(bathophen)rhenium(I) organometallic compound in pancreatic ductal adenocarcinoma
Saha, Ishita , Parpinelli, Cecilia, Varisli, Birsen Y., Mandal, Santosh K. , Bhattacharya, Santanu

Cancer Research | April 3, 2026 | Volume: 86 | Issue: 7_Supplement | Pages: 985-985

10.1158/1538-7445.am2026-985 Get It

Abstract Organometallic rhenium compounds have become powerful anticancer agents that show possibilities as a substitute for traditional platinum-based medications. While platinum-based chemotherapeutics like FOLFIRINOX and cisplatin are frequently used to treat pancreatic ductal adenocarcinoma (PDAC), they have a number of side effects, such as ototoxicity, neurotoxicity, nephrotoxicity, and peripheral neuropathy. Hepatotoxicity, cardiotoxicity, gastrointestinal toxicity, cytopenias, anaphylaxis, pain, alopecia, anorexia, cachexia, and asthenia are other commonly reported adverse effects. However, ligands based on rhenium have been shown to preferentially cause cytotoxicity in cancer cells while avoiding harm to healthy cells. This suggests that rhenium could be a safer and more effective cancer treatment option. Different rhenium compounds with different ligands have been produced by Mandal et al. for a range of medicinal uses. In this work, we assessed the therapeutic potential of tricarbonylperrhenato(bathophen)rhenium(I) (PR-6) in PDAC. The cytotoxic effects and IC50 value of PR-6 were assessed in the metastatic pancreatic cancer cell line AsPC-1 using the MTS assay. The IC50 value for PR-6 in AsPC-1 cells was determined to be 5.85 µM. PR-6 treatment significantly inhibited cell growth, migration, and survival at the IC50 concentration, with a post-treatment survival rate of 2.3 ± 3.97%. Furthermore, PR-6 treatment led to the downregulation of phosphorylated MEK (pMEK) and phosphorylated P38 (pP38) protein expression, indicating its modulatory effect on the MAPK signaling pathway. According to our research, PR-6 has a great therapeutic promise for treating pancreatic cancer and efficiently alters the tumor microenvironment in PDAC cells. Citation Format: Ishita Saha, Cecilia Parpinelli, Birsen Varisli, Santosh Mandal, Santanu Bhattacharya. Anticancer efficacy of tricarbonylperrhenato(bathophen)rhenium(I) organometallic compound in pancreatic ductal adenocarcinoma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2026; Part 1 (Regular Abstracts); 2026 Apr 17-22; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2026;86(7 Suppl):Abstract nr 985.