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Juranić, Nenad

A5040355138 | I1330342723

Mayo Clinic

Mayo Clinic

Citations 16

Two-dimensional exchange spectroscopy revisited: Accounting for the number of participating spins

Journal of the Serbian Chemical Society | June 14, 2018 | Volume: 65 | Issue: 5-6 | Pages: 285-301

10.2298/jsc0006285j

The magnetization exchange between two groups of equivalent spins each having different populations and overall relaxation rates has been analyzed. The results suggest that either the spin population difference or the overall relaxation rate difference in an exchange spectrum can produce cross-peaks with volumes larger than that of the corresponding diagonal line. This is important for interpretation of the magnetization exchange between water and macromolecular protons where both the population differences and auto-relaxation rate differences can be very large. Theoretical predictions of peak volume evolution were experimentally verified in the intermolecular magnetization exchange between the water and labile amide proton in a model system N-acetylglycine/water.
Adenylate kinase AK1 knockout heart: energetics and functional performance under ischemia-reperfusion

American Journal of Physiology-Heart and Circulatory Physiology | March 3, 2015 | Volume: 283 | Issue: 2 | Pages: H776-H782

10.1152/ajpheart.00116.2002 | PMID 12124227

Deletion of the major adenylate kinase AK1 isoform, which catalyzes adenine nucleotide exchange, disrupts cellular energetic economy and compromises metabolic signal transduction. However, the consequences of deleting the AK1 gene on cardiac energetic dynamics and performance in the setting of ischemia-reperfusion have not been determined. Here, at the onset of ischemia, AK1 knockout mice hearts displayed accelerated loss of contractile force compared with wild-type controls, indicating reduced tolerance to ischemic stress. On reperfusion, AK1 knockout hearts demonstrated reduced nucleotide salvage, resulting in lower ATP, GTP, ADP, and GDP levels and an altered metabolic steady state associated with diminished ATP-to-Piand creatine phosphate-to-Piratios. Postischemic AK1 knockout hearts maintained ∼40% of β-phosphoryl turnover, suggesting increased phosphotransfer flux through remaining adenylate kinase isoforms. This was associated with sustained creatine kinase flux and elevated cellular glucose-6-phosphate levels as the cellular energetic system adapted to deletion of AK1. Such metabolic rearrangements, along with sustained ATP-to-ADP ratio and total ATP turnover rate, maintained postischemic contractile recovery of AK1 knockout hearts at wild-type levels. Thus deletion of the AK1 gene reveals that adenylate kinase phosphotransfer supports myocardial function on initiation of ischemic stress and safeguards intracellular nucleotide pools in postischemic recovery.
Dynamic phosphometabolomic profiling of human tissues and transgenic models by18O-assisted31P NMR and mass spectrometry

Physiological Genomics | January 11, 2012 | Volume: 44 | Issue: 7 | Pages: 386-402

10.1152/physiolgenomics.00152.2011 | PMID 22234996

Next-generation screening of disease-related metabolomic phenotypes requires monitoring of both metabolite levels and turnover rates. Stable isotope18O-assisted31P nuclear magnetic resonance (NMR) and mass spectrometry uniquely allows simultaneous measurement of phosphometabolite levels and turnover rates in tissue and blood samples. The18O labeling procedure is based on the incorporation of one18O into Pifrom [18O]H2O with each act of ATP hydrolysis and the distribution of18O-labeled phosphoryls among phosphate-carrying molecules. This enables simultaneous recording of ATP synthesis and utilization, phosphotransfer fluxes through adenylate kinase, creatine kinase, and glycolytic pathways, as well as mitochondrial substrate shuttle, urea and Krebs cycle activity, glycogen turnover, and intracellular energetic communication. Application of expanded18O-labeling procedures has revealed significant differences in the dynamics of G-6-P[18O] (glycolysis), G-3-P[18O] (substrate shuttle), and G-1-P[18O] (glycogenolysis) between human and rat atrial myocardium. In human atria, the turnover of G-3-P[18O], which defects are associated with the sudden death syndrome, was significantly higher indicating a greater importance of substrate shuttling to mitochondria. Phosphometabolomic profiling of transgenic hearts deficient in adenylate kinase (AK1−/−), which altered levels and mutations are associated to human diseases, revealed a stress-induced shift in metabolomic profile with increased CrP[18O] and decreased G-1-P[18O] metabolic dynamics. The metabolomic profile of creatine kinase M-CK/ScCKmit−/−-deficient hearts is characterized by a higher G-6-[18O]P turnover rate, G-6-P levels, glycolytic capacity, γ/β-phosphoryl of GTP[18O] turnover, as well as β-[18O]ATP and β-[18O]ADP turnover, indicating altered glycolytic, guanine nucleotide, and adenylate kinase metabolic flux. Thus,18O-assisted gas chromatography-mass spectrometry and31P NMR provide a suitable platform for dynamic phosphometabolomic profiling of the cellular energetic system enabling prediction and diagnosis of metabolic diseases states.
Structural Basis of Ubiquitin Recognition by Translesion Synthesis DNA Polymerase ι

Biochemistry | November 4, 2010 | Volume: 49 | Issue: 47 | Pages: 10198-10207

10.1021/bi101303t | PMID 21049971

Synthesis, NMR, DFT and antimicrobial studies of Zn(II) complexes with N-benzyloxycarbonyl-S-alanine

Journal of the Serbian Chemical Society | September 23, 2008 | Volume: 73 | Issue: 8-9 | Pages: 815-824

10.2298/jsc0809815m

In this study, the first complexes of Zn(II) with the N-benzyloxycar- bonyl-S-alaninato ligand (N-Boc-S-ala) were synthesized. The new complexes were characterized by elemental analysis, conductometric measurements, IR, 1H-NMR, 13C-NMR and 2D-NMR spectroscopy. On the basis of the experimental data, tetrahedral geometry of the Zn(II) complexes was proposed. A very good agreement between the NMR and DFT calculated data was obtained. Investigation of antimicrobial activity of the newly synthesized complexes was also performed. It was established that [Zn(N-Boc-S-ala)2] was selective and acts only on Candida albicans.
Electron Delocalization Mediates the Metal-Dependent Capacity for CH/π Interactions of Acetylacetonato Chelates

Inorganic Chemistry | June 5, 2006 | Volume: 45 | Issue: 12 | Pages: 4755-4763

10.1021/ic051926g | PMID 16749840

Three-Dimensional Structure of the Water-Insoluble Protein Crambin in Dodecylphosphocholine Micelles and Its Minimal Solvent-Exposed Surface

Journal of the American Chemical Society | March 29, 2006 | Volume: 128 | Issue: 13 | Pages: 4398-4404

10.1021/ja057773d | PMID 16569017

Mixed Cobalt(III) Complexes with Aromatic Amino Acids and Diamine. Part IV. Influence of Noncovalent Intra- and Interligand Interactions on Rotamer Population of the S -Phenylalaninato and S -Tyrosinato Side Groups in (1,2-Diaminoethane) bis ( S -aminocarb

Enantiomer | November 25, 2003 | Volume: 7 | Issue: 6 | Pages: 375-382

10.1080/10242430215714 | PMID 12643314

Structural Dependencies ofh3JNC‘Scalar Coupling in Protein H-Bond Chains

Journal of the American Chemical Society | November 20, 2002 | Volume: 124 | Issue: 47 | Pages: 14221-14226

10.1021/ja0273288 | PMID 12440921

Protein−Solvent Hydrogen Bonding Studied by NMR 1JNC‘ Coupling Constant Determination and Molecular Dynamics Simulations

Journal of the American Chemical Society | July 26, 2002 | Volume: 118 | Issue: 33 | Pages: 7859-7860

10.1021/ja9542101