Citations 41

An Implementation Science Framework to Develop a Clinical Decision Support Tool for Familial Hypercholesterolemia

Journal of Personalized Medicine | July 23, 2020 | Volume: 10 | Issue: 3 | Pages: 67

10.3390/jpm10030067 | PMID 32717811

Electronic health record (EHR)-based clinical decision support (CDS) can address the low awareness and undertreatment of familial hypercholesterolemia (FH), a disorder associated with a markedly increased risk of coronary heart disease. We aimed to incorporate provider perspectives into the development and implementation of a CDS tool for FH. An implementation science framework and a user-centered design process were used to create a CDS tool for FH. Primary care physicians and specialist physicians participated in qualitative interviews, usability testing and an implementation survey. The CDS was configured in two formats—a best practice alert (BPA) and an in-basket message and subsequently deployed in the EHR in silent mode. The key themes that emerged from the analysis of interview transcripts included understanding and awareness of FH, clinical workflow, physician preferences and value of CDS tools, perspectives on patient needs and values and dissemination and implementation. Recommendations related to usability included preferred CDS format and placement, content, timing and frequency, and level of alert urgency/prioritization. In response to the survey, 84.6% of physicians agreed that the CDS would improve early FH diagnosis and 92.3% agreed that it would help them identify and manage FH patients. Physician feedback led to iterative CDS refinement. In summary, we developed a CDS tool for FH using an implementation science framework and physician feedback. Initial deployment revealed a significant burden of FH and the potential for the CDS tool to have a large impact.
Biomedical Data Science and Informatics Challenges to Implementing Pharmacogenomics with Electronic Health Records

Annual Review of Biomedical Data Science | April 27, 2020 | Volume: 3 | Issue: 1 | Pages: 289-314

10.1146/annurev-biodatasci-020320-093614

Pharmacogenomic information must be incorporated into electronic health records (EHRs) with clinical decision support in order to fully realize its potential to improve drug therapy. Supported by various clinical knowledge resources, pharmacogenomic workflows have been implemented in several healthcare systems. Little standardization exists across these efforts, however, which limits scalability both within and across clinical sites. Limitations in information standards, knowledge management, and the capabilities of modern EHRs remain challenges for the widespread use of pharmacogenomics in the clinic, but ongoing efforts are addressing these challenges. Although much work remains to use pharmacogenomic information more effectively within clinical systems, the experiences of pioneering sites and lessons learned from those programs may be instructive for other clinical areas beyond genomics. We present a vision of what can be achieved as informatics and data science converge to enable further adoption of pharmacogenomics in the clinic.
Sync for Genes: Making Clinical Genomics Available for Precision Medicine at the Point-of-Care

Applied Clinical Informatics | April 23, 2020 | Volume: 11 | Issue: 02 | Pages: 295-302

10.1055/s-0040-1708051 | PMID 32323283

Abstract Background Making genomic data available at the point-of-care and for research is critical for the success of the Precision Medicine Initiative (PMI), a research initiative which seeks to change health care by “tak(ing) into account individual differences in people's genes, environments, and lifestyles.” The Office of the National Coordinator for Health Information Technology (ONC) led Sync for Genes, a program to develop standards that make genomic data available when and where it matters most. This article discusses lessons learned from recent Sync for Genes activities. Objectives The goals of Sync for Genes were to (1) demonstrate exchange of genomic data using health data standards, (2) provide feedback for refinement of health data standards, and (3) synthesize project experiences to support the integration of genomic data at the point-of-care and for research. Methods Four organizations participated in a program to test the Health Level Seven International (HL7®) Fast Healthcare Interoperability Resources (FHIR®) standard, which supports sharing genomic data. ONC provided access to subject matter experts, resources, tools, and technical guidance to support testing activities. Three of the four organizations participated in HL7 FHIR Connectathons to test FHIR's ability to exchange genomic diagnostic reports. Results The organizations successfully demonstrated exchange of genomic diagnostic reports using FHIR. The feedback and artifacts that resulted from these activities were shared with HL7 and made publicly available. Four areas were identified as important considerations for similar projects: (1) FHIR proficiency, (2) developer support, (3) project scope, and (4) bridging health information technology and genomic expertise. Conclusion Precision medicine is a rapidly evolving field, and there is opportunity to continue maturing health data standards for the exchange of necessary genomic data, increasing the likelihood that the standard supports the needs of users.
Translational Informatics Connects Real‐World Information to Knowledge in an Increasingly Data‐Driven World

Clinical Pharmacology & Therapeutics | December 14, 2019 | Volume: 107 | Issue: 4 | Pages: 738-741

10.1002/cpt.1719 | PMID 31837229

Cohort Profile: The Right Drug, Right Dose, Right Time: Using Genomic Data to Individualize Treatment Protocol (RIGHT Protocol)

International Journal of Epidemiology | June 1, 2019 | Volume: 49 | Issue: 1 | Pages: 23-24k

10.1093/ije/dyz123 | PMID 31378813

ClinGen Allele Registry links information about genetic variants

Human Mutation | October 12, 2018 | Volume: 39 | Issue: 11 | Pages: 1690-1701

10.1002/humu.23637 | PMID 30311374

ClinGen advancing genomic data‐sharing standards as a GA4GH driver project

Human Mutation | October 12, 2018 | Volume: 39 | Issue: 11 | Pages: 1686-1689

10.1002/humu.23625 | PMID 30311379

Empowering genomic medicine by establishing critical sequencing result data flows: the eMERGE example

Journal of the American Medical Informatics Association | April 19, 2018 | Volume: 25 | Issue: 10 | Pages: 1375-1381

10.1093/jamia/ocy051 | PMID 29860405

AbstractThe eMERGE Network is establishing methods for electronic transmittal of patient genetic test results from laboratories to healthcare providers across organizational boundaries. We surveyed the capabilities and needs of different network participants, established a common transfer format, and implemented transfer mechanisms based on this format. The interfaces we created are examples of the connectivity that must be instantiated before electronic genetic and genomic clinical decision support can be effectively built at the point of care. This work serves as a case example for both standards bodies and other organizations working to build the infrastructure required to provide better electronic clinical decision support for clinicians.
Implementing Genomic Clinical Decision Support for Drug-Based Precision Medicine

CPT: Pharmacometrics & Systems Pharmacology | January 20, 2017 | Volume: 6 | Issue: 3 | Pages: 153-155

10.1002/psp4.12173 | PMID 28109071

The Pharmacogenomics Research Network Translational Pharmacogenetics Program: Outcomes and Metrics of Pharmacogenetic Implementations Across Diverse Healthcare Systems

Clinical Pharmacology & Therapeutics | January 16, 2017 | Volume: 102 | Issue: 3 | Pages: 502-510

10.1002/cpt.630 | PMID 28090649

Numerous pharmacogenetic clinical guidelines and recommendations have been published, but barriers have hindered the clinical implementation of pharmacogenetics. The Translational Pharmacogenetics Program (TPP) of the National Institutes of Health (NIH) Pharmacogenomics Research Network was established in 2011 to catalog and contribute to the development of pharmacogenetic implementations at eight US healthcare systems, with the goal to disseminate real‐world solutions for the barriers to clinical pharmacogenetic implementation. The TPP collected and normalized pharmacogenetic implementation metrics through June 2015, including gene–drug pairs implemented, interpretations of alleles and diplotypes, numbers of tests performed and actionable results, and workflow diagrams. TPP participant institutions developed diverse solutions to overcome many barriers, but the use of Clinical Pharmacogenetics Implementation Consortium (CPIC) guidelines provided some consistency among the institutions. The TPP also collected some pharmacogenetic implementation outcomes (scientific, educational, financial, and informatics), which may inform healthcare systems seeking to implement their own pharmacogenetic testing programs.