Citations 17

Identification, Measurement, and Assessment of the Clinical Utility of Human Pancreatic Polypeptide by Liquid Chromatography–Tandem Mass Spectrometry

Journal of Proteome Research | March 7, 2023 | Volume: 22 | Issue: 4 | Pages: 1322-1330

10.1021/acs.jproteome.2c00829 | PMID 36880754

Machine Learning-Based Fragment Selection Improves the Performance of Qualitative PRM Assays

Journal of Proteome Research | July 18, 2022 | Volume: 21 | Issue: 8 | Pages: 2045-2054

10.1021/acs.jproteome.2c00156 | PMID 35849720

Targeted Detection of SARS-CoV-2 Nucleocapsid Sequence Variants by Mass Spectrometric Analysis of Tryptic Peptides

Journal of Proteome Research | November 15, 2021 | Volume: 21 | Issue: 1 | Pages: 142-150

10.1021/acs.jproteome.1c00613 | PMID 34779632

Challenges in Translating Clinical Metabolomics Data Sets from the Bench to the Bedside

Clinical Chemistry | October 6, 2021 | Volume: 67 | Issue: 12 | Pages: 1581-1583

10.1093/clinchem/hvab210 | PMID 34718477

Isotopic Distribution Calibration for Mass Spectrometry

Analytical Chemistry | September 7, 2021 | Volume: 93 | Issue: 37 | Pages: 12532-12540

10.1021/acs.analchem.1c01672 | PMID 34490782

Analytical Sensitivity and Specificity of Four Point of Care Rapid Antigen Diagnostic Tests for SARS-CoV-2 Using Real-Time Quantitative PCR, Quantitative Droplet Digital PCR, and a Mass Spectrometric Antigen Assay as Comparator Methods

Clinical Chemistry | July 2, 2021 | Volume: 67 | Issue: 11 | Pages: 1545-1553

10.1093/clinchem/hvab138 | PMID 34240163

Abstract Background We evaluated the analytical sensitivity and specificity of 4 rapid antigen diagnostic tests (Ag RDTs) for severe acute respiratory syndrome coronavirus 2, using reverse transcription quantitative PCR (RT-qPCR) as the reference method and further characterizing samples using droplet digital quantitative PCR (ddPCR) and a mass spectrometric antigen test. Methods Three hundred fifty (150 negative and 200 RT-qPCR positive) residual PBS samples were tested for antigen using the BD Veritor lateral flow (LF), ACON LF, ACON fluorescence immunoassay (FIA), and LumiraDx FIA. ddPCR was performed on RT-qPCR–positive samples to quantitate the viral load in copies/mL applied to each Ag RDT. Mass spectrometric antigen testing was performed on PBS samples to obtain a set of RT-qPCR–positive, antigen-positive samples for further analysis. Results All Ag RDTs had nearly 100% specificity compared to RT-qPCR. Overall analytical sensitivity varied from 66.5% to 88.3%. All methods detected antigen in samples with viral load >1 500 000 copies/mL RNA, and detected ≥75% of samples with viral load of 500 000 to 1 500 000 copies/mL. The BD Veritor LF detected only 25% of samples with viral load between 50 000 to 500 000 copies/mL, compared to 75% for the ACON LF device and >80% for LumiraDx and ACON FIA. The ACON FIA detected significantly more samples with viral load <50 000 copies/mL compared to the BD Veritor. Among samples with detectable antigen and viral load <50 000 copies/mL, sensitivity of the Ag RDT varied between 13.0% (BD Veritor) and 78.3% (ACON FIA). Conclusions Ag RDTs differ significantly in analytical sensitivity, particularly at viral load <500 000 copies/mL.
Center of Mass Calculation in Combination with MS/MS Allows Robust Identification of Single Amino Acid Polymorphisms in Clinical Measurements of Insulin-Like Growth Factor-1

Journal of Proteome Research | November 18, 2019 | Volume: 19 | Issue: 1 | Pages: 186-193

10.1021/acs.jproteome.9b00494 | PMID 31736316