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7 citation(s) found for "Xu, Shiyu".

Sex- and experience-dependent regulation of synaptic protein turnover
Zhang, Shiyu , Pandey, Akhilesh , Bygrave, Alexei M. , Huganir, Richard L. , Pandey, Akhilesh , Bygrave, Alexei M , Huganir, Richard L , Heo, Seok , Mun, Dong‐Gi

Proceedings of the National Academy of Sciences | July 7, 2026 | Volume: 123 | Issue: 28 | Pages: No page available

10.1073/pnas.2602111123 | PMID 42412931 Get It

Synaptic transmission can be tuned through plasticity mechanisms that regulate synaptic strength, structure, and number. In vivo measurements demonstrate remarkable spine dynamics, with subsets of synapses persisting for months. This correlates with the longevity of certain memories, which can persist for an organism’s lifetime. The molecular basis supporting the long-term stability of specific synapses and the long-term durability of memories remains unknown. At the protein level, most proteins persist for a relatively short amount of time before they are degraded and replaced with new molecules. However, recent work has identified a population of proteins, including those present at the synapse, that are exceptionally long-lived. It has been speculated that long-lived proteins (LLPs) could contribute to long-term synapse stability, function, and memory. Here, we used stable isotope labeling in mammals to first identify LLPs in the post synaptic density (PSD) of the hippocampus and subsequently determine if protein turnover rates varied by sex or following learning. We identified synaptic LLPs and found that both sex and experience can regulate synaptic protein turnover rates. We identified sex-dependent changes in protein turnover rates in autism spectrum disorder risk genes, including increased stability of Gabrg2, a GABA-A receptor subunit, in male mice. Furthermore, we observed stabilization of a subset of PSD proteins, such as Shank3, following contextual fear conditioning. We propose that sex- and experience-dependent changes in protein turnover rates could help explain sex-differences in psychiatric risk and aid our understanding of the molecular mechanisms that support learning and memory.
Structural insight into the CUB2 domain’s role in enteropeptidase-mediated trypsinogen activation
Song, Qiuyue, Peng, Lisi , Yang, Xia , Xu, Jiaheng , Zhang, Deyu , Tian, Xiaorong, Li, Shiyu , Ji, Baoan , Jin, Zhendong, Ding, Zhanyu , Li, Zhaoshen , Huang, Haojie, Huang, Haojie , Song, Qiuyue , Li, Shiyu, Zhang, Yu , Li, Zhaoshen , Huang, Haojie

Proceedings of the National Academy of Sciences | March 16, 2026 | Volume: 123 | Issue: 12 | Pages: No page available

10.1073/pnas.2521394123 | PMID 41838910 Get It

Elucidating the structure and function of enteropeptidase (EP) is essential for advancing our understanding of its biological significance, particularly in regulating trypsinogen activation. Using cryo-EM and enzymatic activity, we uncovered the significance of the CUB2 domain in mediating the cleavage of macromolecular substrates. We identified crucial binding loops and key residues for EP’s proteolytic function. The mutation E574A enhanced the proteolytic activity of EP, whereas the mutation N619A diminished its cleavage efficiency, highlighting the importance of surface-charged interactions in modulating EP’s activity. A proteolytic cycle was proposed to deepen our understanding of the trypsinogen activation by EP. This work offers valuable insights into the molecular mechanisms underlying EP’s interaction with its substrate, and opens up avenues for therapeutically modulating EP-mediated proteolysis.
Investigating the Effects of Long-Term Fine Particulate Matter Exposure on Autism Spectrum Disorder Severity: Evidence from Multiple Analytical Approaches
Dou, Jianrui, Xie, Ruijin , Xu, Hua, Xiao, Xue, Luo, Yufan , Xu, Shiyu , Xiao, Wei, Wu, Dongqin , Zhang, Linpei , Sun, Chenyu , Liu, Yueying , Xie, Ruijin , Pan, Qiyang, Sun, Chenyu , Dou, Jianrui, Zhang, Kaiyue , Pan‐Hammarström, Qiang , Wang, Bin , Liu, Yueying

Toxics | October 30, 2025 | Volume: 13 | Issue: 11 | Pages: 922

10.3390/toxics13110922 | PMID 41304474 Get It

With rapid industrial expansion, air pollution’s adverse neurological effects have gained increasing attention. Children face a greater risk of neurological damage because of their higher breathing rates, developing brains, and limited ability to detoxify harmful substances. Fine particulate matter has been identified as a primary neurotoxic contributor affecting developing brains. Strong evidence connects environmental pollutant exposure to the prevalence of Autism Spectrum Disorder (ASD), a neurodevelopmental condition marked by lasting difficulties with social communication and interaction. This study explores the association between long-term PM2.5 exposure and ASD symptom exacerbation, investigating underlying mechanisms. We hypothesize that long-term PM2.5 exposure exacerbates ASD symptoms through neuroinflammatory activation, leading to neuronal damage and impaired synaptic plasticity. Our investigation employs three complementary approaches: First, integrated analysis combining Global Burden of Disease data with Mendelian randomization demonstrates a significant association between PM2.5 exposure and increased ASD severity risk. Second, utilizing the China High-Resolution Air Pollution Database in conjunction with cohort studies, we provide evidence that ambient air pollution substantially influences autism severity, with PM2.5 identified as the predominant environmental determinant. Third, through network toxicology, single-cell transcriptomics, and animal experimentation, we demonstrate that chronic PM2.5 exposure exacerbates valproic acid-induced autism-like behaviors in murine models, identifying CTNNB1, PTEN, CCR2, AKT1, and mTOR as potential core mediating genes. Importantly, these findings represent preliminary results. Several potential confounding factors such as co-exposure to other pollutants and socioeconomic variables have not been fully addressed. While our multi-modal approach provides converging lines of evidence, further validation in larger, more diverse populations with refined control of confounders will be essential to establish causality and elucidate mechanisms. Nonetheless, these early insights advance our understanding of PM2.5-induced neurotoxicity in the context of ASD and offer timely, albeit preliminary, evidence to inform public health policy.
Unraveling the Microenvironment and the Pathogenic Axis of HIF‐1α–Visfatin–Fibrosis in Autoimmune Pancreatitis Using a Single‐Cell Atlas
Zhang, Deyu , Ma, Congjia , Liu, Yanfang , Liu, Zaoqu, Li, Wanshun , Liu, Yue , Wu, Chang , Sun, Liqi , Jiang, Fei , Jiang, Hui , Su, Xiaoju, Peng, Lisi , Wang, Xinyue , Yin, Hua, Wan, Dongling, Zhou, Yuyan , Tian, Xiaorong , Li, Shiyu , Jin, Zhendong , Ji, Baoan , Li, Zhaoshen , Huang, Haojie , Wang, Zhen , Huang, Haojie , Wang, Zhen , Li, Jiayu , Li, Zhaoshen

Advanced Science | January 31, 2025 | Volume: 12 | Issue: 12 | Pages: No page available

10.1002/advs.202412282 | PMID 39887620 Get It

AbstractAutoimmune pancreatitis (AIP) is identified as a severe chronic immune‐related disorder in pancreas, including two subtypes. In this study, pancreatic lesions in patients diagnosed as either type 1 AIP or type 2 AIP are examined, and these patients’ peripheral blood at single‐cell level. Furthermore, flow cytometry, immunofluorescence, and functional assays are performed to verify the identified cell subtypes. In type 1 AIP, there is a notable increase in the amount of B cells and plasma cells, and IgG4+ plasma cells are key pathogenic cells of AIP. The differentiation path of naïve‐stage B cells into IgG4+ produced plasma cells is observed, and an increased amount of T helper cells and T follicular helper (Tfh) cells. This study also reveals that HIF‐1α, an activated transcriptional factor, can directly bind to promoter site of NAMPT, promoting higher levels of visfatin production in HIF1A+ classical monocytes. Pancreatic stellate cells can be activated by extracellular visfatin and promote the development of fibrotic response in pancreatic lesions across both AIP subtypes. The current findings shed light on the exploration of dynamic alterations in peripheral blood cells and cell subgroups in pancreatic lesions of AIP, while elucidating a pathogenic cell subset and potential fibrosis mechanism of AIP.
Reply to Annis et al.: Is quasi-Mendelian mtDNA competition enough to drive transmission of paternal mtDNA?
Slone, Jesse , Luo, Shiyu , Atwal, Paldeep S , Huang, Taosheng

Proceedings of the National Academy of Sciences | July 16, 2019 | Volume: 116 | Issue: 30 | Pages: 14799-14800

10.1073/pnas.1909445116 | PMID 31311873 Get It

Reply to Lutz-Bonengel et al.: Biparental mtDNA transmission is unlikely to be the result of nuclear mitochondrial DNA segments
Luo, Shiyu , Valencia, C. Alexander , Lee, Ni‐Chung , Slone, Jesse , Gui, Baoheng , Wang, Xinjian , Dell, Sarah, Brown, Jenice, Chen, Stella Maris, Hwu, Wuh‐Liang , Fan, Pi‐Chuan , Wong, Lee‐Jun C. , Huang, Taosheng , Li, Zhuo , Zhang, Jinglan , Li, Zhuo , Chien, Yin-Hsiu , Atwal, Paldeep S

Proceedings of the National Academy of Sciences | January 23, 2019 | Volume: 116 | Issue: 6 | Pages: 1823-1824

10.1073/pnas.1821357116 | PMID 30674682 Get It

Biparental Inheritance of Mitochondrial DNA in Humans
Luo, Shiyu , Valencia, C. Alexander , Zhang, Jinglan , Lee, Ni‐Chung , Slone, Jesse , Gui, Baoheng , Wang, Xinjian , Li, Zhuo , Dell, Sarah, Brown, Jenice, Chen, Stella Maris, Hwu, Wuh‐Liang , Fan, Pi‐Chuan , Wong, Lee-Jun, Huang, Taosheng , Li, Zhuo , Chien, Yin-Hsiu , Atwal, Paldeep S

Proceedings of the National Academy of Sciences | November 26, 2018 | Volume: 115 | Issue: 51 | Pages: 13039-13044

10.1073/pnas.1810946115 | PMID 30478036 Get It

Significance The energy-producing organelle mitochondrion contains its own compact genome, which is separate from the nuclear genome. In nearly all mammals, this mitochondrial genome is inherited exclusively from the mother, and transmission of paternal mitochondria or mitochondrial DNA (mtDNA) has not been convincingly demonstrated in humans. In this paper, we have uncovered multiple instances of biparental inheritance of mtDNA spanning three unrelated multiple generation families, a result confirmed by independent sequencing across multiple unrelated laboratories with different methodologies. Surprisingly, this pattern of inheritance appears to be determined in an autosomal dominantlike manner. This paper profoundly alters a widespread belief about mitochondrial inheritance and potentially opens a novel field in mitochondrial medicine.