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4 citation(s) found for "Ebner, Blake A".

Artificial intelligence‐based statistical modeling delineates architectural distortion in focal cortical dysplasia
Cannon, Andrew , Tian, Roland, Ebner, Blake , Burkett, Brian J. , Gompel, Jamie Van, Hartley, Christopher P., Moreira, Roger K. , Raghunathan, Aditya, Gompel, Jamie J. Van , Burkett, Brian , Van Gompel, Jamie J , Wong-Kisiel, Lily C. , Watson, Robert E., Wong‐Kisiel, Lily C. , Hartley, Christopher P.

Brain Pathology | March 26, 2026 | Volume: 36 | Issue: 5 | Pages: No page available

10.1111/bpa.70096 | PMID 42767799 Get It

Abstract In epilepsy patients lacking magnetic resonance imaging‐visible lesions such as focal cortical dysplasia (FCD), surgical resections target regions with abnormal electroencephalographic (EEG) activity. However, histopathological identification of subtle cortical architectural abnormalities in these specimens remains challenging. We investigated whether artificial intelligence (AI)‐based morphometric and spatial analysis of NeuN‐stained cortical sections could detect neuronal architectural disorganization in epilepsy resections, including regions without definitive histologic dysplasia. Whole slide images were generated from 83 FCD regions and 19 neurologically normal autopsy controls. Regions of interest were annotated in QuPath as FCD, FCD‐adjacent, FCD‐distant, apparently normal (abnormal EEG without histologic dysplasia), and true normal (autopsy controls). NeuN‐positive neurons were detected using QuPath (90% sensitivity, 12% false positive rate). Spatial and morphometric features—including neuronal clustering, distribution inhomogeneity, and nuclear morphology—were extracted and used to train a multinomial, Least Absolute Shrinkage and Selection Operator‐regularized regression classifier. The classifier achieved 70.6% accuracy in subregion classification and 88.2% accuracy in overall specimen diagnosis. Notably, regions with abnormal EEG but lacking histologic dysplasia exhibited quantifiable architectural disorganization similar to those seen in areas adjacent to FCD and distinct from control tissue. AI‐driven analysis of neuronal morphology and spatial distribution reveals subtle cortical disorganization in epilepsy resections, including in histologically ambiguous regions. Further investigation is warranted to determine if this methodology can enhance the diagnostic yield of neuropathological evaluation and support more precise surgical targeting in epilepsy.
Association of CDKN2A/B and MTAP deletions in adult-type diffuse gliomas
Ebner, Blake A. , Ida, Cristiane M. , Jenkins, Robert B, Mendoza, Cinthya J Zepeda, Giannini, C., Trejo-Lopez, Jorge, Raghunathan, Aditya, Jenkins, RB , Zepeda Mendoza, Cinthya J, Trejo-Lopez, Jorge A, Raghunathan, Aditya , Ida, Cristiane M , Kollmeyer, Thomas M. , Jenkins, Robert B. , Zepeda‐Mendoza, Cinthya , Trejo‐Lopez, Jorge , Raghunathan, Aditya

Journal of Neuropathology & Experimental Neurology | January 31, 2026 | Volume: 85 | Issue: 6 | Pages: 551-560

10.1093/jnen/nlag007 | PMID 41802222 Get It

Abstract In adult-type diffuse gliomas CDKN2A and/or CDKN2B (CDKN2A/B) deletions often co-occur with deletion of MTAP, suggesting that MTAP immunohistochemistry (IHC) may be a surrogate marker of CDKN2A/B status. However, the association between CDKN2A/B and MTAP deletion at the genomic level remains unknown. We assessed CDKN2A/B and MTAP deletions by chromosomal microarray in 333 adult-type diffuse gliomas and performed MTAP IHC on a subset (n = 63). CDKN2A/B and MTAP deletions were detected in 216 and 215 cases, respectively, and were concurrent in 99.5% (215/216). While most tumors with CDKN2A/B homozygous deletion (n = 148) showed concurrent MTAP homozygous deletion (108/148; 73.0%), a subset harbored MTAP heterozygous deletion (39/148; 26.4%). By analyzing the size of the chromosomal alterations, we demonstrate that initial large chromosomal 9p losses result in concurrent heterozygous deletion of CDKN2A/B and MTAP whereas smaller “second hit” deletions leading to homozygous CDKN2A/B deletion do not always encompass the MTAP locus. Discordant CDKN2A/B and MTAP tumors affect the association between MTAP IHC and copy number status of MTAP and CDKN2A/B. These findings suggest that adult-type diffuse gliomas, regardless of IDH status, follow a stereotypic pathway involving concurrent CDKN2A/B and MTAP heterozygous deletion but may diverge for CDKN2A/B and MTAP homozygous deletion.
Systematic approach to diagnosing suspected Creutzfeldt-Jakob disease
Rode, Matthew M. , Itoh, Christopher Y. , Sosa, Santiago Martinez , Ebner, Blake A, Chang, Bryce Kalei , Itoh, Christopher, Martinez-Sosa, Santiago, Chang, Bryce K , Rode, Matthew , Martinez Sosa, Santiago , Ebner, Blake A., Flanagan, Eoin P. , Pinto, Marcus Vinícius

BMJ Case Reports | December 7, 2023 | Volume: 16 | Issue: 12 | Pages: e255174

10.1136/bcr-2023-255174 | PMID 38061853 Get It

Evaluation of rapidly progressive dementia (RPD) is usually challenging. In most cases, patients progress to dementia in weeks to months, and the differential diagnosis is broad. In this case, a woman in her 60s presented with a 1-month history of episodic vertigo, cognitive decline, ataxia and myoclonus. Cerebrospinal fluid total tau was markedly elevated, which was helpful in establishing the diagnosis and discussing prognosis/end-of-life measures with the patient’s family. This case summarises a stepwise diagnostic approach for patients with RPD and highlights recent literature on biomarkers of Creutzfeldt-Jakob disease and autoimmune encephalitis.
Brachial plexus lipomatosis with perineurial pseudoonion bulb formation: Result of a mosaic PIK3CA mutation in the para‐axial mesoderm state
Ebner, Blake A. , Eschbacher, Kathryn L. , Jack, Megan M. , Milosevic, Dragana , Spinner, Robert J. , Dragana, Milosevic, Giannini, Caterina

Brain Pathology | February 28, 2022 | Volume: 32 | Issue: 4 | Pages: No page available

10.1111/bpa.13057 | PMID 35224812 Get It