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1031 citation(s) found for "Xu, Clark".

FusX: A Rapid One-Step Transcription Activator-Like Effector Assembly System for Genome Science
Alvin, C. H. , McNulty, Melissa S. , Poshusta, Tanya L., Campbell, Jarryd M. , Martínez‐Gálvez, Gabriel , Argue, David P., Lee, Han , Urban, Mark D. , Bullard, Cassandra E., Blackburn, Patrick R. , Man, Toni Ki Fong, Clark, Karl J. , Ekker, Stephen C. , Ma, Alvin C, Lee, Han B, Ekker, Stephen C , Lee, Han B , Clark, Karl J

Human Gene Therapy | February 8, 2016 | Volume: 27 | Issue: 6 | Pages: 451-463

10.1089/hum.2015.172 | PMID 26854857 Get It

Transcription activator-like effectors (TALEs) are extremely effective, single-molecule DNA-targeting molecular cursors used for locus-specific genome science applications, including high-precision molecular medicine and other genome engineering applications. TALEs are used in genome engineering for locus-specific DNA editing and imaging, as artificial transcriptional activators and repressors, and for targeted epigenetic modification. TALEs as nucleases (TALENs) are effective editing tools and offer high binding specificity and fewer sequence constraints toward the targeted genome than other custom nuclease systems. One bottleneck of broader TALE use is reagent accessibility. For example, one commonly deployed method uses a multitube, 5-day assembly protocol. Here we describe FusX, a streamlined Golden Gate TALE assembly system that (1) is backward compatible with popular TALE backbones, (2) is functionalized as a single-tube 3-day TALE assembly process, (3) requires only commonly used basic molecular biology reagents, and (4) is cost-effective. More than 100 TALEN pairs have been successfully assembled using FusX, and 27 pairs were quantitatively tested in zebrafish, with each showing high somatic and germline activity. Furthermore, this assembly system is flexible and is compatible with standard molecular biology laboratory tools, but can be scaled with automated laboratory support. To demonstrate, we use a highly accessible and commercially available liquid-handling robot to rapidly and accurately assemble TALEs using the FusX TALE toolkit. Together, the FusX system accelerates TALE-based genomic science applications from basic science screening work for functional genomics testing and molecular medicine applications.
A Case of Severe, Prolonged, Refractory Hypophosphatemia After Zoledronic Acid Administration
Clark, Sarah L. , Nystrom, Erin M.

Journal of Pharmacy Practice | January 6, 2016 | Volume: 29 | Issue: 2 | Pages: 172-176

10.1177/0897190015624050 | PMID 26739479 Get It

Zoledronic acid (ZA) administration has been associated with electrolyte abnormalities, including hypocalcemia, hypomagnesemia, hypokalemia, and hypophosphatemia. We describe a case of severe, refractory hypophosphatemia in a patient who received ZA for hypercalcemia of malignancy (HCM). Little data are available that describe the incidence or degree of severity of hypophosphatemia that can occur following ZA administration. In addition, no formal recommendations exist to guide monitoring for or management of electrolyte derangements in the setting of bisphosphonate use. Our patient required daily, high-dose phosphorus replacement beginning day 4 following ZA administration. The average daily dose of phosphorus, including both intravenous and enteral administration, was highest in the first 2 weeks after ZA, averaging 77 mmol/d days 4 through 15, and does not include sources of phosphorus from the patient’s nutrition support. Despite this high amount of supplementation, which was well beyond what meets normal daily requirements and the amount expected to treat “usual” hypophosphatemia, the patient did not achieve sustained normal serum phosphorus levels for over 30 days after ZA. ZA is a favorable option for treating HCM because of its longer duration of action, potent serum calcium-lowering effects, and favorable safety profile. The risk of hypophosphatemia with ZA use is reviewed.
Comprehensively understanding fatigue in patients with myeloproliferative neoplasms
Scherber, Robyn M. , Senyak, Zhenya, Dueck, Amylou C. , Clark, Matthew M. , Boxer, Michael , Geyer, Holly L. , McCallister, Archie, Cotter, Mary, Husen, Barbara Van, Harrison, Claire , Dueck, A. C. , Kosiorek, Heidi , Mesa, Ruben A.

Cancer | December 15, 2015 | Volume: 122 | Issue: 3 | Pages: 477-485

10.1002/cncr.29753 | PMID 26670597 Get It

BACKGROUND Patients with myeloproliferative neoplasms (MPNs) experience a high persistence, prevalence, and severity of fatigue. There is currently only limited information regarding factors that contribute to fatigue in patients with MPNs. METHODS A 70‐item, Internet‐based survey regarding fatigue was developed by MPN investigators and patients/advocates and hosted by the Mayo Clinic Survey Research Center. RESULTS Fatigue was found to be prevalent and severe among international survey respondents (1788 respondents). Higher body mass index ( P <.001), current use of alcohol ( P <.001), and current tobacco use ( P = .0025) were found to be significantly associated with greater fatigue. Moderate/severe fatigue was present more frequently in those individuals who did not exercise compared with those who reported exercising at least once per week ( P <.001). Medical comorbidities found to be significantly associated with greater fatigue included restless leg syndrome ( P = .006), diabetes mellitus ( P = .045), fibromyalgia ( P < 0.001), chronic fatigue syndrome ( P = .006), and chronic kidney disease ( P = .02). Current use of antidepressants ( P <.001), antihistamines ( P = .0276), antianxiety medications ( P = .0357), and prescription pain medications ( P <.001) were found to be associated with worsened fatigue. Nearly 25% of respondents scored > 2 on the Patient Health Questionnaire, indicating a high probability of depression. Higher Brief Fatigue Inventory score, Myeloproliferative Neoplasm Total Symptom Score, and individual symptom items were all associated with a higher likelihood of depressive symptoms ( P <.0001). CONCLUSIONS The management of fatigue should be multifactorial, with a comprehensive assessment and treatment plan to address all modifiable fatigue etiologies. Patients with MPNs likely have a higher prevalence of mood disturbances compared with the general population, suggesting the need to assess and intervene in this domain. Cancer 2016;122:477–485. © 2015 American Cancer Society .
A bright future for protein kinase D1 as a drug target to prevent or treat pancreatic cancer
Störz, Peter , Leitges, Michael , Liou, Geou‐Yarh , Leitges, Michael

Molecular & Cellular Oncology | December 10, 2015 | Volume: 3 | Issue: 1 | Pages: e1035477

10.1080/23723556.2015.1035477 | PMID 27308552 Get It

InsR/IGF1R Pathway Mediates Resistance to EGFR Inhibitors in Glioblastoma
Ma, Yufang , Tang, Nan , Thompson, Reid C., Mobley, Bret C. , Clark, Steven W., Wang, Jialiang , Sarkaria, Jann N.

Clinical Cancer Research | November 11, 2015 | Volume: 22 | Issue: 7 | Pages: 1767-1776

10.1158/1078-0432.ccr-15-1677 | PMID 26561558 Get It

Abstract Purpose: Aberrant activation of EGFR is a hallmark of glioblastoma. However, EGFR inhibitors exhibit at best modest efficacy in glioblastoma. This is in sharp contrast with the observations in EGFR-mutant lung cancer. We examined whether activation of functionally redundant receptor tyrosine kinases (RTKs) conferred resistance to EGFR inhibitors in glioblastoma. Experimental Design: We collected a panel of patient-derived glioblastoma xenograft (PDX) lines that maintained expression of wild-type or mutant EGFR in serial xenotransplantation and tissue cultures. Using this physiologically relevant platform, we tested the abilities of several RTK ligands to protect glioblastoma cells against an EGFR inhibitor, gefitinib. Based on the screening results, we further developed a combination therapy cotargeting EGFR and insulin receptor (InsR)/insulin-like growth factor 1 receptor (IGF1R). Results: Insulin and IGF1 induced significant protection against gefitinib in the majority of EGFR-dependent PDX lines with one exception that did not express InsR or IGF1R. Blockade of the InsR/IGF1R pathway synergistically improved sensitivity to gefitinib or dacomitinib. Gefitinib alone effectively attenuated EGFR activities and the downstream MEK/ERK pathway. However, repression of AKT and induction of apoptosis required concurrent inhibition of both EGFR and InsR/IGF1R. A combination of gefitinib and OSI-906, a dual InsR/IGF1R inhibitor, was more effective than either agent alone to treat subcutaneous glioblastoma xenograft tumors. Conclusions: Our results suggest that activation of the InsR/IGF1R pathway confers resistance to EGFR inhibitors in EGFR-dependent glioblastoma through AKT regulation. Concurrent blockade of these two pathways holds promise to treat EGFR-dependent glioblastoma. Clin Cancer Res; 22(7); 1767–76. ©2015 AACR.
Improving Spiritual Well-Being in Patients with Lung Cancers
Piderman, Katherine M. , Sytsma, Terin T. , Frost, Marlene H., Novotny, Paul J. , Osian, Sarah M. Rausch, Sloan, Jeff A. , Rummans, Teresa A. , Bronars, Carrie, Clark, Matthew M. , Patten, Christi A. , Bronars, Carrie A, Nes, Lise Solberg , Yang, Ping

Journal of Pastoral Care & Counseling: Advancing theory and professional practice through scholarly and reflective publicati | October 13, 2015 | Volume: 69 | Issue: 3 | Pages: 156-162

10.1177/1542305015602711 | PMID 26463853 Get It

Patients with lung cancer report more disease burden and lower spiritual well-being (SWB) compared with other cancer patients. Understanding variables that lessen disease burden and improve SWB is essential. The aim of this study was to explore the relationship between motivational level for physical activity and SWB in patients with lung cancer. Linear regression showed increased SWB as stage of change for physical activity increased (p < 0.0001), even after adjusting for multiple demographic variables.
Carbon dioxide laser treatment for Hailey–Hailey disease: a retrospective chart review with patient‐reported outcomes
Hochwalt, Phillip C., Christensen, Kevin, Cantwell, Sean , Hocker, Thomas L., Otley, Clark C. , Brewer, Jerry D., Arpey, Christopher J., Roenigk, Randall K., Baum, Christian L. , Christensen, Kevin N, Cantwell, Sean R.

International Journal of Dermatology | October 13, 2015 | Volume: 54 | Issue: 11 | Pages: 1309-1314

10.1111/ijd.12991 | PMID 26341946 Get It

AbstractBackgroundHailey–Hailey disease (HHD) is an autosomal dominant genodermatosis that leads to skin breakdown and blister formation, usually in intertriginous areas. Laser ablation is a known surgical treatment for HHD.ObjectivesWe report outcomes in a series of patients with HHD treated with carbon dioxide (CO2) laser ablation.MethodsA retrospective chart review of data for 13 patients who underwent CO2 laser ablation for HHD was conducted. Questionnaires assessing effectiveness, pain, healing time, recurrence, new disease, complications, additional ablation, improvement in quality of life (QoL), and overall satisfaction were completed by all patients.ResultsAll patients had been recalcitrant to previous treatments prior to CO2 laser ablation. Anatomic sites treated and anesthesia techniques for the procedure varied. The mean ± standard deviation (SD) score for the effectiveness of CO2 laser ablation for HHD was 9.3 ± 0.9 (maximum: 10). All patients reported improved QoL. No patient had recurring disease within the treatment field. Five patients underwent additional CO2 laser treatments at new sites. One patient reported postoperative infection. No other complications were identified. The mean ± SD score for overall satisfaction with CO2 laser ablation was 8.9 ± 1.1.ConclusionsTreatment with CO2 laser ablation is very effective and can lead to prolonged or permanent remission in most HHD patients. Patients are highly satisfied with the results and report a substantial improvement in QoL.
Reviews of Books
Jones, Hester, Stephensonr, Jean, Goggin, D., Land, Robert, Wood, Richard, Kent, George, Brownell, Jean, Nelson, Clark, Solomon, Barbara, Harding, Bruce, Brownell, Jean

The American Archivist | October 7, 2015 | Volume: 28 | Issue: 4 | Pages: 565-576

10.17723/aarc.28.4.4601ww5p04256238 Get It

President's Page
Nelson, Clark

The American Archivist | October 7, 2015 | Volume: 29 | Issue: 3 | Pages: 403-484

10.17723/aarc.29.3.e73g035367750142 Get It

Reviews of Books
Hill, Edward E., Bodem, Dennis, Macoll, John D., Claussen, Martin, Waffen, Leslie, Lovett, Robert W., Heard, J. F., Butler, John, Nelson, Clark W.

The American Archivist | October 7, 2015 | Volume: 34 | Issue: 2 | Pages: 191-202

10.17723/aarc.34.2.h6w3803w35r6221h Get It