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609 citation(s) found for "Yuan, Ji".

Atomic levers control pyranose ring conformations
Marszałek, Piotr E. , Pang, Yuan‐Ping , Li, Hongbin , Yazal, Jamal El, Fernández, Julio M., Oberhauser, Andrés F. , Pang, Yuan-Ping

Proceedings of the National Academy of Sciences | July 26, 2002 | Volume: 96 | Issue: 14 | Pages: 7894-7898

10.1073/pnas.96.14.7894 | PMID 10393918 Get It

Atomic force microscope manipulations of single polysaccharide molecules have recently expanded conformational chemistry to include force-driven transitions between the chair and boat conformers of the pyranose ring structure. We now expand these observations to include chair inversion, a common phenomenon in the conformational chemistry of six-membered ring molecules. We demonstrate that by stretching single pectin molecules (1 → 4-linked α- d -galactouronic acid polymer), we could change the pyranose ring conformation from a chair to a boat and then to an inverted chair in a clearly resolved two-step conversion: 4 C 1 ⇄ boat ⇄ 1 C 4 . The two-step extension of the distance between the glycosidic oxygen atoms O 1 and O 4 determined by atomic force microscope manipulations is corroborated by ab initio calculations of the increase in length of the residue vector O 1 O 4 on chair inversion. We postulate that this conformational change results from the torque generated by the glycosidic bonds when a force is applied to the pectin molecule. Hence, the glycosidic bonds act as mechanical levers, driving the conformational transitions of the pyranose ring. When the glycosidic bonds are equatorial (e), the torque is zero, causing no conformational change. However, when the glycosidic bond is axial (a), torque is generated, causing a rotation around C—C bonds and a conformational change. This hypothesis readily predicts the number of transitions observed in pyranose monomers with 1a-4a linkages (two), 1a-4e (one), and 1e-4e (none). Our results demonstrate single-molecule mechanochemistry with the capability of resolving complex conformational transitions.
Phenserine regulates translation of β-amyloid precursor protein mRNA by a putative interleukin-1 responsive element, a target for drug development
Shaw, Karen T. Y., Utsuki, Tadanobu, Rogers, Jack T. , Yu, Qian‐sheng, Sambamurti, Kumar , Brossi, Arnold, Ge, Yuan‐Wen, Lahiri, Debomoy K. , Greig, Nigel H.

Proceedings of the National Academy of Sciences | July 26, 2002 | Volume: 98 | Issue: 13 | Pages: 7605-7610

10.1073/pnas.131152998 | PMID 11404470 Get It

The reduction in levels of the potentially toxic amyloid-β peptide (Aβ) has emerged as one of the most important therapeutic goals in Alzheimer's disease. Key targets for this goal are factors that affect the expression and processing of the Aβ precursor protein (βAPP). Earlier reports from our laboratory have shown that a novel cholinesterase inhibitor, phenserine, reduces βAPP levels in vivo . Herein, we studied the mechanism of phenserine's actions to define the regulatory elements in βAPP processing. Phenserine treatment resulted in decreased secretion of soluble βAPP and Aβ into the conditioned media of human neuroblastoma cells without cellular toxicity. The regulation of βAPP protein expression by phenserine was posttranscriptional as it suppressed βAPP protein expression without altering βAPP mRNA levels. However, phenserine's action was neither mediated through classical receptor signaling pathways, involving extracellular signal-regulated kinase or phosphatidylinositol 3-kinase activation, nor was it associated with the anticholinesterase activity of the drug. Furthermore, phenserine reduced expression of a chloramphenicol acetyltransferase reporter fused to the 5′-mRNA leader sequence of βAPP without altering expression of a control chloramphenicol acetyltransferase reporter. These studies suggest that phenserine reduces Aβ levels by regulating βAPP translation via the recently described iron regulatory element in the 5′-untranslated region of βAPP mRNA, which has been shown previously to be up-regulated in the presence of interleukin-1. This study identifies an approach for the regulation of βAPP expression that can result in a substantial reduction in the level of Aβ.
Zinc's Affect on Proton Transfer between Imidazole and Acetate Predicted by ab Initio Calculations
Yazal, Jamal El, Roe, Rachel R., Pang, Yuan‐Ping

The Journal of Physical Chemistry B | July 26, 2002 | Volume: 104 | Issue: 28 | Pages: 6662-6667

10.1021/jp994283x Get It

Proton Dissociation Energies of Zinc-Coordinated Hydroxamic Acids and Their Relative Affinities for Zinc:  Insight into Design of Inhibitors of Zinc-Containing Proteinases
Yazal, Jamal El, Pang, Yuan‐Ping

The Journal of Physical Chemistry B | July 26, 2002 | Volume: 104 | Issue: 27 | Pages: 6499-6504

10.1021/jp0012707 Get It

Successful Virtual Screening of a Chemical Database for Farnesyltransferase Inhibitor Leads
Perola, Emanuele, Kollmeyer, Thomas M. , Kaufmann, Scott H. , Prendergast, Franklyn G., Pang, Yuan‐Ping , Xu, Kun , Kollmeyer, Thomas , Kaufmann, Scott H , Pang, Yuan-Ping

Journal of Medicinal Chemistry | July 26, 2002 | Volume: 43 | Issue: 3 | Pages: 401-408

10.1021/jm990408a | PMID 10669567 Get It

Ab Initio Calculations of Proton Dissociation Energies of Zinc Ligands:  Hypothesis of Imidazolate as Zinc Ligand in Proteins
Yazal, Jamal El, Pang, Yuan‐Ping

The Journal of Physical Chemistry B | July 26, 2002 | Volume: 103 | Issue: 41 | Pages: 8773-8779

10.1021/jp991787m Get It

Novel Stable Configurations and Tautomers of the Neutral and Deprotonated Hydroxamic Acids Predicted from High-Level ab Initio Calculations
Yazal, Jamal El, Pang, Yuan‐Ping

The Journal of Physical Chemistry A | July 26, 2002 | Volume: 103 | Issue: 41 | Pages: 8346-8350

10.1021/jp992203j Get It

Heterodimeric Tacrine-Based Acetylcholinesterase Inhibitors:  Investigating Ligand−Peripheral Site Interactions
Carlier, Paul R. , Chow, Ella S.‐H., Han, Yifan , Yazal, Jamal El, Pang, Yuan‐Ping , Liu, Jing , Han, Yifan , Pang, Yuan-Ping

Journal of Medicinal Chemistry | July 26, 2002 | Volume: 42 | Issue: 20 | Pages: 4225-4231

10.1021/jm990224w | PMID 10514292 Get It

Protonation States of the Chromophore of Denatured Green Fluorescent Proteins Predicted by ab Initio Calculations
Yazal, Jamal El, Prendergast, Franklyn G., Shaw, David E. , Pang, Yuan‐Ping , Pang, Yuan-Ping

Journal of the American Chemical Society | July 26, 2002 | Volume: 122 | Issue: 46 | Pages: 11411-11415

10.1021/ja0008721 Get It