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344 citation(s) found for "Dai, Pu".

Validating drug repurposing signals using electronic health records: a case study of metformin associated with reduced cancer mortality
Xu, Hua , Aldrich, Melinda C. , Peterson, Neeraja B. , Levy, Mia , Shah, Anushi, Han, Xue, Ruan, Xiaoyang , Jiang, Min , Li, Ying , Julien, Jamii St., Friedman, Carol, Roden, Dan M. , Denny, Joshua C. , Chen, Qingxia , Liu, Hongfang , Dai, Qi , Han, Xue, Warner, Jeremy L. , Roden, Dan M. , Denny, Joshua C

Journal of the American Medical Informatics Association | July 23, 2014 | Volume: 22 | Issue: 1 | Pages: 179-191

10.1136/amiajnl-2014-002649 | PMID 25053577 Get It

Abstract Objectives Drug repurposing, which finds new indications for existing drugs, has received great attention recently. The goal of our work is to assess the feasibility of using electronic health records (EHRs) and automated informatics methods to efficiently validate a recent drug repurposing association of metformin with reduced cancer mortality. Methods By linking two large EHRs from Vanderbilt University Medical Center and Mayo Clinic to their tumor registries, we constructed a cohort including 32 415 adults with a cancer diagnosis at Vanderbilt and 79 258 cancer patients at Mayo from 1995 to 2010. Using automated informatics methods, we further identified type 2 diabetes patients within the cancer cohort and determined their drug exposure information, as well as other covariates such as smoking status. We then estimated HRs for all-cause mortality and their associated 95% CIs using stratified Cox proportional hazard models. HRs were estimated according to metformin exposure, adjusted for age at diagnosis, sex, race, body mass index, tobacco use, insulin use, cancer type, and non-cancer Charlson comorbidity index. Results Among all Vanderbilt cancer patients, metformin was associated with a 22% decrease in overall mortality compared to other oral hypoglycemic medications (HR 0.78; 95% CI 0.69 to 0.88) and with a 39% decrease compared to type 2 diabetes patients on insulin only (HR 0.61; 95% CI 0.50 to 0.73). Diabetic patients on metformin also had a 23% improved survival compared with non-diabetic patients (HR 0.77; 95% CI 0.71 to 0.85). These associations were replicated using the Mayo Clinic EHR data. Many site-specific cancers including breast, colorectal, lung, and prostate demonstrated reduced mortality with metformin use in at least one EHR. Conclusions EHR data suggested that the use of metformin was associated with decreased mortality after a cancer diagnosis compared with diabetic and non-diabetic cancer patients not on metformin, indicating its potential as a chemotherapeutic regimen. This study serves as a model for robust and inexpensive validation studies for drug repurposing signals using EHR data.
External Validation of a Multiplex Urinary Protein Panel for the Detection of Bladder Cancer in a Multicenter Cohort
Chen, Li-Mei, Chang, Myron, Dai, Yunfeng , Chai, Karl X., Dyrskjøt, Lars , Sänchez‐Carbayo, Marta, Szarvas, Tibor , Zwarthoff, Ellen C. , Lokeshwar, Vinata B. , Jerónimo, Cármen , Parker, Alexander S. , Ross, Shanti, Borre, Michael , Ørntoft, Torben F., Jaeger, T., Beukers, Willemien, López, Luis E., Henrique, Rui , Urquidi, Virginia, Goodison, Steve , Rosser, Charles J. , Chen, Li‐Mei , Young, Paul R.

Cancer Epidemiology, Biomarkers & Prevention | June 12, 2014 | Volume: 23 | Issue: 9 | Pages: 1804-1812

10.1158/1055-9965.epi-14-0029 | PMID 24920641 Get It

Abstract Background: Because of the faltering sensitivity and/or specificity, urine-based assays currently have a limited role in the management of patients with bladder cancer. The aim of this study was to externally validate our previously reported protein biomarker panel from multiple sites in the United States and Europe. Methods: This multicenter external validation study included a total of 320 subjects (bladder cancer = 183). The 10 biomarkers (IL8, MMP9, MMP10, SERPINA1, VEGFA, ANG, CA9, APOE, SDC1, and SERPINE1) were measured using commercial ELISA assays in an external laboratory. The diagnostic performance of the biomarker panel was assessed using receiver operator curves (ROC) and descriptive statistical values. Results: Utilizing the combination of all 10 biomarkers, the area under the ROC for the diagnostic panel was noted to be 0.847 (95% confidence interval, 0.796–0.899), outperforming any single biomarker. The multiplex assay at optimal cutoff value achieved an overall sensitivity of 0.79, specificity of 0.79, positive prediction value of 0.73, and negative prediction value of 0.84 for bladder cancer classification. Sensitivity values of the diagnostic panel for high-grade bladder cancer, low-grade bladder cancer, muscle invasive bladder cancer, and non-muscle invasive bladder cancer were 0.81, 0.90, 0.95, and 0.77, respectively. Conclusions: Urinary levels of the biomarker panel enabled discrimination of patients with bladder cancer and controls, and the levels of biomarker subsets were associated with advancing tumor grade and stage. Impact: If proven to be reliable, urinary diagnostic biomarker assays can detect bladder cancer in a timely manner such that the patient can expect improvements in overall survival and quality of life. Cancer Epidemiol Biomarkers Prev; 23(9); 1804–12. ©2014 AACR.
Analysis of flow changes in side branches jailed by flow diverters in rabbit models
Raschi, Marcelo , Mut, Fernando , Ding, Yong‐Hond, Kadirvel, Ramanathan , Kallmes, David F. , Cebral, Juan R. , Dai, Daying

International Journal for Numerical Methods in Biomedical Engineering | April 14, 2014 | Volume: 30 | Issue: 10 | Pages: 988-999

10.1002/cnm.2640 | PMID 24729467 Get It

SUMMARYUnderstanding the flow alteration in side branches during flow diversion treatment of cerebral aneurysms is important to prevent ischemic complications and improve device designs. Flow diverters were placed in the aorta of four rabbits crossing the origin of side arteries. Subject‐specific computational models were constructed from 3D angiographies and Doppler ultrasounds (DUSs). Flow simulations were run before and after virtually deploying the flow diverters, assuming distal resistances remained unchanged after treatment. All jailed arteries remained patent angiographically 8 weeks after treatment. The computational models estimated decreases compared to pretreatment in the mean flow rates between 2% and 20% and in peak flow rates between 5% and 36%. The major changes were observed during systole. Flow patterns did not exhibit recirculation zones before treatment. Implantation of the flow diverters altered the flow structure only locally near the device wires. No major recirculation regions were created or destroyed. Flow diverters seem safe with respect to perforator or side branch occlusion. Relatively small changes in flow rates through jailed arteries are expected, even for moderate to large degrees of coverage of their origins. These results seem consistent with previous clinical experiences where no or very few complications related to perforator occlusion have been reported.Copyright © 2014 John Wiley & Sons, Ltd.
Urinary Protein Biomarker Panel for the Detection of Recurrent Bladder Cancer
Rosser, Charles J. , Chang, Myron, Dai, Yunfeng , Ross, Shanti, Mengual, Lourdes , Alcaraz, Antonio , Goodison, Steve

Cancer Epidemiology, Biomarkers & Prevention | April 9, 2014 | Volume: 23 | Issue: 7 | Pages: 1340-1345

10.1158/1055-9965.epi-14-0035 | PMID 24714076 Get It

Abstract Background: Up to 70% of patients with non–muscle-invasive bladder cancer (NMIBC) experience disease recurrence, making it one of the most prevalent cancers in the United States. The purpose of this study was to test the performance of a multiplex urinary biomarker assay for the monitoring of voided urine for recurrent bladder cancer. Methods: This retrospective, multicenter study included a total of 125 subjects with a history of bladder cancer. Voided urine specimens were collected before procedure from these subjects (53 with confirmed tumor recurrence and 72 with confirmed non-tumor recurrence) for analysis. A prediction rule generated from the performance characteristics of 10 single biomarkers (IL8, MMP9, MMP10, SERPINA1, VEGFA, ANG, CA9, APOE, SERPINE1, and SDC1) was measured using ELISA. The diagnostic performance of the biomarker panel was assessed using receiver operator curves (ROC) and descriptive statistical values (e.g., sensitivity and specificity). Results: The combination of all 10 biomarkers outperformed any single biomarker with a calculated AUROC for the diagnostic panel of 0.904 [95% confidence interval (CI), 0.853–0.956]. The multiplex assay achieved an overall sensitivity of 79% and specificity of 88% for recurrent bladder cancer and significantly outperformed the Urovysion cytogenetic assay (sensitivity 42%, specificity 94%) and voided urinary cytology (sensitivity 33%, specificity 90%). Conclusions: A diagnostic panel of 10 urinary biomarkers that accurately detects primary bladder cancer also performs well for the detection of recurrent bladder cancer. Impact: The identification of a reliable urine-based surveillance and detection assay would be of benefit to both patients and the healthcare system. Cancer Epidemiol Biomarkers Prev; 23(7); 1340–5. ©2014 AACR.
Diabetes-Causing Gene, Kruppel-Like Factor 11, Modulates the Antinociceptive Response of Chronic Ethanol Intake
Ou, Xiao‐Ming, Udemgba, Chinelo , Wang, Niping , Dai, Xiaoli , Lomberk, Gwen , Seo, Seungmae , Wang, Junming , Duncan, Jeremy W. , Harris, Sharonda, Fairbanks, Carolyn A. , Zhang, Xiao , Urrutia, Raúl , Lomberk, Gwen L

Alcoholism: Clinical and Experimental Research | January 15, 2014 | Volume: 38 | Issue: 2 | Pages: 401-408

10.1111/acer.12258 | PMID 24428663 Get It

Contribution of Bcl-2 Phosphorylation to Bak Binding and Drug Resistance
Dai, Haiming , Ding, Husheng, Meng, X. Wei, Lee, Sun Hee , Schneider, Paula A., Kaufmann, Scott H. , Dai, Haiming , Lee, Sun-Hee

Cancer Research | October 5, 2013 | Volume: 73 | Issue: 23 | Pages: 6998-7008

10.1158/0008-5472.can-13-0940 | PMID 24097825 Get It

Abstract Bcl-2 is phosphorylated on Ser70 after treatment of cells with spindle poisons. On the basis of effects observed in cells overexpressing Bcl-2 S70E or S70A mutants, various studies have concluded that Ser70 phosphorylation either enhances or diminishes Bcl-2 function. In the present study, the ability of phosphorylated Bcl-2, as well as the S70E and S70A mutants, to bind and neutralize proapoptotic Bcl-2 family members under cell-free conditions and in intact cells was examined in an attempt to resolve this controversy. Surface plasmon resonance indicated that phosphorylated Bcl-2, Bcl-2 S70E, and Bcl-2 S70A exhibit enhanced binding to Bim and Bak compared with unmodified Bcl-2. This enhanced binding reflected a readily detectable conformation change in the loop domain of Bcl-2. Furthermore, Bcl-2 S70E and S70A bound more Bak and Bim than wild-type Bcl-2 in pull-downs and afforded greater protection against several chemotherapeutic agents. Importantly, binding of endogenous Bcl-2 to Bim also increased during mitosis, when Bcl-2 is endogenously phosphorylated, and disruption of this mitotic Bcl-2/Bim binding with navitoclax or ABT-199, like Bcl-2 downregulation, enhanced the cytotoxicity of paclitaxel. Collectively, these results provide not only a mechanistic basis for the enhanced antiapoptotic activity of phosphorylated Bcl-2, but also an explanation for the ability of BH3 mimetics to enhance taxane sensitivity. Cancer Res; 73(23); 6998–7008. ©2013 AACR.
Hemodynamics of Elastase-Induced Aneurysms in Rabbit: A New High Flow Bifurcation Model
Zeng, Zijing, Kallmes, David F. , Ding, Yong Hong, Kadirvel, Ramanathan , Lewis, Debra A., Robertson, Anne M. , Ding, Yonghong , Dai, Daying , Robertson, Anne M

ASME 2011 Summer Bioengineering Conference, Parts A and B | July 17, 2013 | Volume: No volume available | Issue: No issue available | Pages: 267-268

10.1115/sbc2011-53819 Get It

An intracranial aneurysm (IA) is a pathological condition of cerebral arteries characterized by local enlargements of the arterial wall, typically into a saccular shape. Rupture of the aneurysm sac can result in devastating cerebral hemorrhage. Hemodynamic factors are believed to play an important role in initiation, development and rupture of IAs [1–3]. However, the coupling between hemodynamics and aneurysm pathophysiology is complex and remains poorly understood. Patient specific diagnostics regarding risk of rupture can be substantially advanced by improving our understanding of the in-vivo response of the aneurysm wall to intra-saccular hemodynamic stresses. A mechanism for fundamental studies of the impact of chronically altered WSS on the intact vascular wall is provided by animal models. However, cerebral aneurysms have not been shown to occur naturally in animals. Thus, a number of animal models have been created for studying aneurysm pathogenesis including those in mice, rats, rabbits, canines, swine and primates. To make meaningful use of these models, it is important to evaluate their relevance to human biomechanics and pathophysiology.
Faculty Opinions recommendation of Relative mitochondrial priming of myeloblasts and normal HSCs determines chemotherapeutic success in AML.
Kaufmann, Scott H. , Dai, Haiming , Kaufmann, Scott H

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature | December 21, 2012 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.3410/f.717967902.793467528 Get It

Healing of saccular aneurysms following platinum coil embolization: lack of improved efficacy with vitamin C supplementation
Yong-Hong, Ding, Rezek, Issa, Lewis, Debra A., Kallmes, David F. , Kadirvel, Ramanathan , Dai, Daying , Yong-Hong, Ding

Journal of NeuroInterventional Surgery | August 23, 2012 | Volume: 5 | Issue: 6 | Pages: 591-596

10.1136/neurintsurg-2012-010421 | PMID 22914744 Get It

Background and purpose To test the hypothesis that systemic administration of vitamin C, through its action of stimulating collagen synthesis and crosslinking, would decrease the recurrence and improve the occlusion of experimental aneurysms treated with platinum coils. Methods Experimental aneurysms were created in female rabbits and were embolized with platinum coils (>30% packing density). The animals were divided into three groups: group 1 (n=6) rabbits served as controls, group 2 (n=5) rabbits were fed with a vitamin C supplemented feed and group 3 (n=8) rabbits were medicated with vitamin C pills. Digital subtraction angiography was used to evaluate stability after embolization. Subjects were euthanized at 12 weeks after coil implantation, and serum vitamin C levels were then measured. Histological samples were examined with a grading system (range 0–12) based on the neck and dome features. Masson Trichrome staining was used to evaluate collagen deposition. Parametric data were analyzed with one way analysis of variance and non-parametric data were examined using a Kruskal–Wallis test. Results There were no significant differences between groups in mean aneurysm size. Mean serum vitamin C concentration was significantly higher in group 3 and group 2 compared with group 1, while vitamin C levels between group 2 and group 3 were statistically comparable. Coil compaction was noted in one of six subjects in group 1 and in three of eight subjects in group 3. All of the remaining aneurysms in the test and control groups showed stable occlusion. There were no significant differences in histological scores or collagen deposition among groups. Conclusions Vitamin C supplementation following platinum coil embolization does not demonstrate improvement of long term occlusion rates of aneurysms.
Faculty Opinions recommendation of Metabolic regulation of protein N-alpha-acetylation by Bcl-xL promotes cell survival.
Kaufmann, Scott H. , Dai, Haiming , Kaufmann, Scott H

Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature | August 20, 2012 | Volume: No volume available | Issue: No issue available | Pages: No page available

10.3410/f.13174956.14635085 Get It