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29 citation(s) found for "Qi, Xinyue".

AMPK: The key to ischemia‐reperfusion injury
Cai, Jie , Chen, Xinyue , Liu, Xingyu , Li, Zhangwang , Shi, Ao , Tang, Xiaoyi, Xia, Panpan, Zhang, Jing , Yu, Peng

Journal of Cellular Physiology | September 22, 2022 | Volume: 237 | Issue: 11 | Pages: 4079-4096

10.1002/jcp.30875 | PMID 36134582 Get It

AbstractIschemia‐reperfusion injury (IRI) refers to a syndrome in which tissue damage is further aggravated and organ function further deteriorates when blood flow is restored after a period of tissue ischemia. Acute myocardial infarction, stress ulcer, pancreatitis, intestinal ischemia, intermittent claudication, acute tubular necrosis, postshock liver failure, and multisystem organ failure are all related to reperfusion injury. AMP‐activated protein kinase (AMPK) has been identified in multiple catabolic and anabolic signaling pathways. The functions of AMPK during health and diseases are intriguing but still need further research. Except for its conventional roles as an intracellular energy switch, emerging evidence reveals the critical role of AMPK in IRI as an energy‐sensing signal molecule by regulating metabolism, autophagy, oxidative stress, inflammation, and other progressions. At the same time, drugs based on AMPK for the treatment of IRI are constantly being researched and applied in clinics. In this review, we summarize the mechanisms underlying the effects of AMPK in IRI and describe the AMPK‐targeting drugs in treatment, hoping to increase the understanding of AMPK in IRI and provide new insights into future clinical treatment.
Bayesian sparse modeling to identify high‐risk subgroups in meta‐analysis of safety data
Qi, Xinyue , Wang, Yucai , Peterson, Christine B. , Zhou, Shouhao , Wang, Yucai , Peterson, Christine , Zhou, Shouhao

Research Synthesis Methods | August 11, 2022 | Volume: 13 | Issue: 6 | Pages: 807-820

10.1002/jrsm.1597 | PMID 36054779 Get It

AbstractMeta‐analysis allows researchers to combine evidence from multiple studies, making it a powerful tool for synthesizing information on the safety profiles of new medical interventions. There is a critical need to identify subgroups at high risk of experiencing treatment‐related toxicities. However, this remains quite challenging from a statistical perspective as there are a variety of clinical risk factors that may be relevant for different types of adverse events, and adverse events of interest may be rare or incompletely reported. We frame this challenge as a variable selection problem and propose a Bayesian hierarchical model which incorporates a horseshoe prior on the interaction terms to identify high‐risk groups. Our proposed model is motivated by a meta‐analysis of adverse events in cancer immunotherapy, and our results uncover key factors driving the risk of specific types of treatment‐related adverse events.
Occult lymph node metastasis in radiologic stage I non‐small cell lung cancer: The role of endobronchial ultrasound
KUKHON, FAEQ R , Lan, Xinyue, Arunthari, Vichaya, Fernández-Bussy, Sebastián , Patel, Neal M. , Helgeson, Scott A.

The Clinical Respiratory Journal | February 25, 2021 | Volume: 15 | Issue: 6 | Pages: 676-682

10.1111/crj.13344 | PMID 33630405 Get It

AbstractRationaleThe use of endobronchial ultrasound‐guided transbronchial needle aspiration (EBUS‐TBNA) is currently recommended for staging non‐small cell lung cancer (NSCLC) in centrally located tumors, tumors >3 cm, or with radiologic evidence of lymph node (LN) metastasis. Current guidelines do not recommend staging EBUS‐TBNA in patients with stage I NSCLC who do not have any of the aforementioned conditions.ObjectiveWe hypothesize that using EBUS‐TBNA is useful for detecting occult metastasis in radiologic stage I NSCLC.MethodsIn this single‐center, retrospective study, charts of patients ≥18 years old who underwent staging EBUS‐TBNA from January 2005 to May 2019 were reviewed. Only patients with combined positron‐emission tomography and computed tomography (PET/CT) scans consistent with radiologic stage I NSCLC were included. Identified variables included: age, gender, personal history of any cancer, smoking history, tumor location, tumor centrality, tumor size, tumor PET activity, histopathologic type of NSCLC, and LN biopsy results. Patients whose LN samples showed a diagnosis other than NSCLC were excluded. The association between LN positivity, and each of the variables was assessed using Pearson's correlation for categorical variables, and logistic regression analysis for continuous variables.ResultsFrom the 2,892 initially screened patients, 188 were included. Of those, 13 (6.9%; 95% CI, 4%–11%) had a malignancy‐positive LN biopsy. The number needed to test (NNT) in order to detect one case of any occult metastasis was 15. Among the included variables, a significant association was found between LN positivity and tumor centrality, with central tumors found in 61.5% of patients with positive LN (n = 8) (p < 0.01). This association stayed significant after adjusting for age, gender, smoking history, tumor size, tumor location, and PET activity (p = 0.015). Among patients with malignancy‐positive LN biopsies, five (38.5%; 95% CI, 17.6%–64.6%) were upstaged to N1, and eight (61.5%; 95% CI, 35.4%–82.4%) were upstaged to N2, with NNT of 23 to detect one case of occult N2 metastasis. Subgroup analysis comparing LN‐positive patients based on their N stage did not show statistically significant association with any of the variables.ConclusionBased on our results and along with the existing evidence, EBUS‐TBNA should be recommended as part of the routine staging in all patients with radiologic stage I NSCLC.
Occult Lymph Node Metastasis in Radiographic Stage I Non-Small Cell Lung Cancer: The Role of Endobronchial Ultrasound Guided Biopsy
KUKHON, FAEQ R , Lan, Xinyue, Arunthari, Vichaya, Fernández-Bussy, Sebastián , Patel, Neal M. , Lan, X., Helgeson, Scott A.

A110. ADVANCES IN INTERVENTIONAL PULMONOLOGY | July 7, 2020 | Volume: No volume available | Issue: No issue available | Pages: A2727-A2727

10.1164/ajrccm-conference.2020.201.1_meetingabstracts.a2727 Get It

Genetic mutations and features of mantle cell lymphoma: a systematic review and meta-analysis
Hill, Holly A. , Qi, Xinyue , Jain, Preetesh , Nomie, Krystle , Wang, Yucai , Wang, Michael , Wang, Yucai , Jain, Preetesh , Zhou, Shouhao

Blood Advances | June 29, 2020 | Volume: 4 | Issue: 13 | Pages: 2927-2938

10.1182/bloodadvances.2019001350 | PMID 32598477 Get It

Abstract Mantle cell lymphoma (MCL) is an incurable rare subtype of non-Hodgkin lymphoma and is subject to relapse and therapeutic resistance. Molecular aberrations in MCL affect pathogenesis, prognosis, and therapeutic response. In this systematic review, we searched 3 databases and selected 32 articles that described mutations in MCL patients. We then conducted a meta-analysis using a Bayesian multiregression model to analyze patient-level data in 2127 MCL patients, including prevalence of mutations. In tumor or bone marrow samples taken at diagnosis or baseline, ATM was the most frequently mutated gene (43.5%) followed by TP53 (26.8%), CDKN2A (23.9%), and CCND1 (20.2%). Aberrations were also detected in IGH (38.4%) and MYC (20.8%), primarily through cytogenetic methods. Other common baseline mutations were NSD2 (15.0%), KMT2A (8.9%), S1PR1 (8.6%), and CARD11 (8.5%). Our data also show a change in mutational status from baseline samples to samples at disease progression and present mutations of interest in MCL that should be considered for future analysis. The genes with the highest mutational frequency difference (&gt;5%) are TP53, ATM, KMT2A, MAP3K14, BTK, TRAF2, CHD2, TLR2, ARID2, RIMS2, NOTCH2, TET2, SPEN, NSD2, CARD11, CCND1, SP140, CDKN2A, and S1PR1. These findings provide a summary of the mutational landscape of MCL. The genes with the highest change in mutation frequency should be included in targeted next-generation sequencing panels for future studies. These findings also highlight the need for analysis of serial samples in MCL. Patient-level data of prevalent mutations in MCL provide additional evidence emphasizing molecular variability in advancing precision medicine initiatives in MCL.
Analysis of α-synuclein species enriched from cerebral cortex of humans with sporadic dementia with Lewy bodies
Sanderson, John , De, Suman , Jiang, Haiyang , Rovere, Matteo , Jin, Ming , Zaccagnini, Ludovica, Watson, Aurelia Hays, Boni, Laura de , Lagomarsino, Valentina N. , Pochapsky, Thomas C. , Sanderson, John B , Dickson, Dennis W , Young‐Pearse, Tracy L. , Liu, Xinyue , Hyman, Bradley T. , Dickson, Dennis W. , Klenerman, David A. , Selkoe, Dennis J. , Bartels, Tim

Brain Communications | February 11, 2020 | Volume: 2 | Issue: 1 | Pages: No page available

10.1093/braincomms/fcaa010 | PMID 32280944 Get It

Abstract Since researchers identified α-synuclein as the principal component of Lewy bodies and Lewy neurites, studies have suggested that it plays a causative role in the pathogenesis of dementia with Lewy bodies and other ‘synucleinopathies’. While α-synuclein dyshomeostasis likely contributes to the neurodegeneration associated with the synucleinopathies, few direct biochemical analyses of α-synuclein from diseased human brain tissue currently exist. In this study, we analysed sequential protein extracts from a substantial number of patients with neuropathological diagnoses of dementia with Lewy bodies and corresponding controls, detecting a shift of cytosolic and membrane-bound physiological α-synuclein to highly aggregated forms. We then fractionated aqueous extracts (cytosol) from cerebral cortex using non-denaturing methods to search for soluble, disease-associated high molecular weight species potentially associated with toxicity. We applied these fractions and corresponding insoluble fractions containing Lewy-type aggregates to several reporter assays to determine their bioactivity and cytotoxicity. Ultimately, high molecular weight cytosolic fractions enhances phospholipid membrane permeability, while insoluble, Lewy-associated fractions induced morphological changes in the neurites of human stem cell-derived neurons. While the concentrations of soluble, high molecular weight α-synuclein were only slightly elevated in brains of dementia with Lewy bodies patients compared to healthy, age-matched controls, these observations suggest that a small subset of soluble α-synuclein aggregates in the brain may drive early pathogenic effects, while Lewy body-associated α-synuclein can drive neurotoxicity.
Hydrogels: Multifunctional “Hydrogel Skins” on Diverse Polymers with Arbitrary Shapes (Adv. Mater. 7/2019)
Yu, Yan , Yuk, Hyunwoo , Parada, German Alberto , Wu, You , Liu, Xinyue , Nabzdyk, Christoph S. , Youcef‐Toumi, Kamal , Zang, Jianfeng , Zhao, Xuanhe

Advanced Materials | February 12, 2019 | Volume: 31 | Issue: 7 | Pages: No page available

10.1002/adma.201970044 Get It

Multifunctional “Hydrogel Skins” on Diverse Polymers with Arbitrary Shapes
Yu, Yan , Yuk, Hyunwoo , Parada, German Alberto , Wu, You , Liu, Xinyue , Nabzdyk, Christoph S. , Youcef‐Toumi, Kamal , Nabzdyk, Christoph , Zang, Jianfeng , Zhao, Xuanhe

Advanced Materials | December 20, 2018 | Volume: 31 | Issue: 7 | Pages: No page available

10.1002/adma.201807101 | PMID 30570776 Get It

Abstract Slippery and hydrophilic surfaces find critical applications in areas as diverse as biomedical devices, microfluidics, antifouling, and underwater robots. Existing methods to achieve such surfaces rely mostly on grafting hydrophilic polymer brushes or coating hydrogel layers, but these methods suffer from several limitations. Grafted polymer brushes are prone to damage and do not provide sufficient mechanical compliance due to their nanometer‐scale thickness. Hydrogel coatings are applicable only for relatively simple geometries, precluding their use for the surfaces with complex geometries and features. Here, a new method is proposed to interpenetrate hydrophilic polymers into the surface of diverse polymers with arbitrary shapes to form naturally integrated “hydrogel skins.” The hydrogel skins exhibit tissue‐like softness (Young's modulus ≈ 30 kPa), have uniform and tunable thickness in the range of 5–25 µm, and can withstand prolonged shearing forces with no measurable damage. The hydrogel skins also provide superior low‐friction, antifouling, and ionically conductive surfaces to the polymer substrates without compromising their original mechanical properties and geometry. Applications of the hydrogel skins on inner and outer surfaces of various practical polymer devices including medical tubing, Foley catheters, cardiac pacemaker leads, and soft robots on massive scales are further demonstrated.