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2508 citation(s) found for "Xu, Yang".

Green's function-based simulations of shear waves generated by acoustic radiation force in elastic and viscoelastic soft tissue models
Yang, Yiqun , McGough, Robert J., Urban, Matthew W.

The Journal of the Acoustical Society of America | May 21, 2014 | Volume: 135 | Issue: 4_Supplement | Pages: 2371-2371

10.1121/1.4877823 Get It

The Green's function approach describes propagating shear waves generated by an acoustic radiation force in elastic and viscoelastic soft tissue. Calculations with the Green's function approach are evaluated in elastic and viscoelastic soft tissue models for a line source and for a simulated focused beam. The results for the line source input are evaluated at 200 time samples in a 101 by 101 point grid that is perpendicular to the line source. For a shear wave speed of 1.4832 m/s and a compressional wave speed of 1500 m/s, shear wave simulations for a line source input in elastic and viscoelastic soft tissue models are completed in 431 and 2487 s with Matlab scripts, respectively, where the shear viscosity is 0.1 Pa.s in the viscoelastic model. Simulations are evaluated at a single point for an acoustic radiation force generated by a 128 element linear array operating at 4.09 MHz, and these simulations require 228 s and 1327 s for elastic and viscoelastic soft tissue models, respectively. The results show that these are effective models for simulating shear wave propagation in soft tissue, and plans to accelerate these simulations will also be discussed. [Supported in part by NIH Grants R01 EB012079 and R01 DK092255.]
Assessment of Nuclear Nanomorphology Marker to Improve the Detection of Malignancy From Bile Duct Biopsy Specimens
Uttam, Shikhar , Staton, Kevin D., Bista, Rajan K., IIyas, Sumera I, Slivka, Adam, Liu, Yang , I Ilyas, Sumera, Hartman, Douglas J. , Krasinskas, Alyssa M. , Brand, Randall E.

American Journal of Clinical Pathology | May 16, 2014 | Volume: 141 | Issue: 6 | Pages: 884-891

10.1309/ajcpxqd0nsjnk0cx | PMID 24838334 Get It

Abstract Objectives: The accurate diagnosis of malignancy from small bile duct biopsy specimens is often challenging. This proof-of-concept study assessed the feasibility of a novel optical technology, spatial-domain low-coherence quantitative phase microscopy (SL-QPM), that assesses nanoscale structural alterations in epithelial nuclei for improving the diagnosis of malignancy in bile duct biopsy specimens. Methods: The SL-QPM analysis was performed on standard histology specimens of bile duct biopsy specimens from 45 patients. We analyzed normal cells with benign follow-up, histologically normal cells with pancreaticobiliary malignancy, and malignant epithelial cells. Results: The SL-QPM–derived nuclear nanomorphology marker can not only distinguish benign and malignant epithelial cells but can also detect features of malignancy in those cells normal by light microscopy with a discriminatory accuracy of 0.90. When combining pathology with SL-QPM, the sensitivity is improved to 88.5% from 65.4% of conventional pathology, while maintaining 100% specificity. Conclusions: SL-QPM–derived nuclear nanomorphology markers represent a novel approach for detecting malignancy from histologically normal-appearing epithelial cells, with potential as an adjunctive test in patients with negative or inconclusive pathologic diagnosis on bile duct biopsy specimens.
Probing Antibody-Antigen Interactions
Yang, Guocheng, Velgos, Stefanie N., Boddapati, Shanta , Velgos, Stefanie N., Sierks, Michael R.

Microbiology Spectrum | April 30, 2014 | Volume: 2 | Issue: 1 | Pages: No page available

10.1128/microbiolspec.aid-0010-2013 | PMID 26082105 Get It

ABSTRACT Antibodies are biological molecules generated by the host immune system in response to the invasion of foreign bodies or antigens. Therefore, antibodies must possess high specificity toward target antigens in order for the antigen to be recognized and subsequently destroyed. Because of this specificity, antibodies or antibody fragments that maintain binding specificity are heavily used in diagnostic assays and are becoming increasingly important in many therapeutic applications. Classical immunoassays such as radioimmunoassay and enzyme-linked immunosorbent assay are effective analytical techniques that have been widely used to screen and determine antibody specificity. Because of increased demands for antibodies with well-defined specificities, other techniques have been developed that facilitate generation and characterization of antibody-binding specificities under different conditions, such as when the protein is expressed on a cell surface or the target antigen is hard to isolate. Here, we describe three alternate techniques that provide unique abilities to characterize antibody-antigen binding events: (i) surface plasmon resonance, (ii) fluorescence activated cell sorting, and (iii) atomic force microscopy. These different techniques take advantage of various changes in physical and/or chemical properties of the analytes that occur upon binding, such as refractive index, surface charge, and changes in structure. These techniques provide unique powerful advantages over traditional immunoassays including real-time and label-free detection, low sample volume and concentration requirements, and molecular-level detection sensitivity. This article provides an overview of how these alternate approaches to studying antibody-antigen interactions can be used to facilitate rapid development of new antibody-based reagents for diagnostic and therapeutic applications.
Insulin‐like growth factor‐1 regulates the SIRT 1‐p53 pathway in cellular senescence
Tran, Duc T. , Zhang, Haibo , He, Hanbing, Wang, Yang , Li, Qintong , Kirkland, James L. , Bergholz, Johann S. , Zhang, Yujun , Xiao, Zhi‐Xiong Jim

Aging Cell | April 30, 2014 | Volume: 13 | Issue: 4 | Pages: 669-678

10.1111/acel.12219 | PMID 25070626 Get It

Summary Cellular senescence, which is known to halt proliferation of aged and stressed cells, plays a key role against cancer development and is also closely associated with organismal aging. While increased insulin‐like growth factor ( IGF ) signaling induces cell proliferation, survival and cancer progression, disrupted IGF signaling is known to enhance longevity concomitantly with delay in aging processes. The molecular mechanisms involved in the regulation of aging by IGF signaling and whether IGF regulates cellular senescence are still poorly understood. In this study, we demonstrate that IGF ‐1 exerts a dual function in promoting cell proliferation as well as cellular senescence. While acute IGF ‐1 exposure promotes cell proliferation and is opposed by p53, prolonged IGF ‐1 treatment induces premature cellular senescence in a p53‐dependent manner. We show that prolonged IGF ‐1 treatment inhibits SIRT 1 deacetylase activity, resulting in increased p53 acetylation as well as p53 stabilization and activation, thus leading to premature cellular senescence. In addition, either expression of SIRT 1 or inhibition of p53 prevented IGF ‐1‐induced premature cellular senescence. Together, these findings suggest that p53 acts as a molecular switch in monitoring IGF ‐1‐induced proliferation and premature senescence, and suggest a possible molecular connection involving IGF ‐1‐ SIRT 1‐p53 signaling in cellular senescence and aging.
Evidence that the Lung Adenocarcinoma EML4-ALK Fusion Gene Is not Caused by Exposure to Secondhand Tobacco Smoke During Childhood
Wang, Yi , Jen, Jin , Yi, Eunhee S. , Olivo‐Marston, Susan , Harris, Curtis C. , Ryan, Bríd M. , Yang, Ping

Cancer Epidemiology, Biomarkers & Prevention | April 24, 2014 | Volume: 23 | Issue: 7 | Pages: 1432-1434

10.1158/1055-9965.epi-14-0224 | PMID 24755712 Get It

Abstract Background: The EML4-ALK fusion gene is more frequently found in younger, never smoking patients with lung cancer. Meanwhile, never smokers exposed to secondhand tobacco smoke (SHS) during childhood are diagnosed at a younger age compared with never smoking patients with lung cancer who are not exposed. We, therefore, hypothesized that SHS, which can induce DNA damage, is associated with the EML4-ALK fusion gene. Methods: We compared the frequency of the EML4-ALK fusion gene among 197 never smoker patients with lung cancer with and without a history of exposure to SHS during childhood at Mayo Clinic. Results: The EML4-ALK fusion gene was detected in 33% of cases from never smokers with a history of SHS exposure during childhood, whereas 47% of never smoking lung cancer cases without a history of childhood SHS exposure tested positive for the fusion gene. Conclusions: The EML4-ALK fusion gene is not enriched in tumors from individuals exposed to SHS during childhood. Impact: These data suggest that childhood exposure to SHS is not a significant etiologic cause of the EML4-ALK fusion gene in lung cancer. Cancer Epidemiol Biomarkers Prev; 23(7); 1432–4. ©2014 AACR.
LIGHT, a TNF-Like Molecule, Costimulates T Cell Proliferation and Is Required for Dendritic Cell-Mediated Allogeneic T Cell Response
Tamada, Koji , Shimozaki, Koji , Chapoval, Andrei I. , Su, Jeffery, Chen, Su-Fang, Nagata, Shigekazu , Zhai, Yifan , Hsieh, Shie-Liang Edmond , Ni, Jian , Chen, Lieping

The Journal of Immunology | April 21, 2014 | Volume: 164 | Issue: 8 | Pages: 4105-4110

10.4049/jimmunol.164.8.4105 | PMID 10754304 Get It

Abstract LIGHT is a recently identified member of the TNF superfamily and its receptors, herpesvirus entry mediator and lymphotoxin β receptor, are found in T cells and stromal cells. In this study, we demonstrate that LIGHT is selectively expressed on immature dendritic cells (DCs) generated from human PBMCs. In contrast, LIGHT is not detectable in DCs either freshly isolated from PBMCs or rendered mature in vitro by LPS treatment. Blockade of LIGHT by its soluble receptors, lymphotoxin β receptor-Ig or HVEM-Ig, inhibits the induction of DC-mediated primary allogeneic T cell response. Furthermore, engagement of LIGHT costimulates human T cell proliferation, amplifies the NF-κB signaling pathway, and preferentially induces the production of IFN-γ, but not IL-4, in the presence of an antigenic signal. Our results suggest that LIGHT is a costimulatory molecule involved in DC-mediated cellular immune responses.
The Critical Role of LIGHT, a TNF Family Member, in T Cell Development
Lo, James C. , Wu, Qiang , Wang, Yang , Foster, Amy, Roca, Karin, Chen, Min , Tamada, Koji , Wang, Chyung‐Ru , Wang, Jing , Chun, Taehoon , Chen, Lieping , Fu, Yang‐Xin

The Journal of Immunology | April 20, 2014 | Volume: 167 | Issue: 9 | Pages: 5099-5105

10.4049/jimmunol.167.9.5099 | PMID 11673520 Get It

Abstract Negative selection refers to the selective deletion of autoreactive thymocytes but its molecular events have not been well defined. In this study, we demonstrate that a cellular ligand for herpes virus entry mediator and lymphotoxin receptor (LIGHT), a newly identified member of the TNF superfamily, may play a critical role in negative selection. Using TCR transgenic mice, we find that the blockade of LIGHT signaling in vitro and in vivo prevents negative selection induced by peptide and intrathymically expressed Ags, resulting in the rescue of thymocytes from apoptosis. Furthermore, the thymi of LIGHT transgenic mice show severe atrophy with remarkably reduced CD4+CD8+ double-positive cells caused by increased apoptosis, suggesting that LIGHT can delete immature T cells in vivo. Taken together, these results demonstrate a critical role of LIGHT in thymic negative selection of the T cell repertoire.
B7-H3 Enhances Tumor Immunity In Vivo by Costimulating Rapid Clonal Expansion of Antigen-Specific CD8+ Cytolytic T Cells
Luo, Liqun , Chapoval, Andrei I. , Flies, Dallas B. , Zhu, Gefeng, Hirano, Fumiya, Wang, Shengdian , Lau, Julie S., Tamada, Koji , Flies, Andrew S. , Dong, Haidong , Liu, Yang , Chen, Lieping

The Journal of Immunology | April 20, 2014 | Volume: 173 | Issue: 9 | Pages: 5445-5450

10.4049/jimmunol.173.9.5445 | PMID 15494491 Get It

Abstract B7-H3 is a B7 family molecule with T cell costimulatory function in vitro. The in vivo role of B7-H3 in the stimulation of tumor immunity is unclear. We report here that expression of B7-H3 by transfection of the mouse P815 tumor line enhances its immunogenicity, leading to the regression of tumors and amplification of a tumor-specific CD8+ CTL response in syngeneic mice. Tumor cells engineered to express B7-H3 elicit a rapid clonal expansion of P1A tumor Ag-specific CD8+ CTL in lymphoid organs in vivo and acquire the ability to directly stimulate T cell growth, division, and development of cytolytic activity in vitro. Our results thus establish a role for B7-H3 in the costimulation of T cell immune responses in vivo.
Administration of Agonistic Anti-4-1BB Monoclonal Antibody Leads to the Amelioration of Experimental Autoimmune Encephalomyelitis
Sun, Yonglian , Lin, Xiaoqi , Chen, Helen M., Wu, Qiang , Subudhi, Sumit Kumar , Chen, Lieping , Fu, Yang‐Xin

The Journal of Immunology | April 20, 2014 | Volume: 168 | Issue: 3 | Pages: 1457-1465

10.4049/jimmunol.168.3.1457 | PMID 11801689 Get It

Abstract 4-1BB, a member of the TNFR superfamily, is a costimulatory receptor primarily expressed on activated T cells. It has been shown that the administration of agonistic anti-4-1BB Abs enhances tumor immunity and allogenic immune responses. Paradoxically, we found that the administration of an agonistic anti-4-1BB mAb (2A) dramatically reduced the incidence and severity of experimental autoimmune encephalomyelitis (EAE). Adoptive transfer of T cells from such treated mice failed to induce EAE, whereas anti-4-1BB treatment following adoptive transfer of encephalitogenic T cells did not prevent EAE pathogenesis. These results suggest that anti-4-1BB treatment during the induction phase inhibits autoreactive T cell immune responses rather than preventing T cell trafficking into the CNS. This was substantiated by the observations that draining lymph node cells from anti-4-1BB-treated mice failed to respond to Ag stimulation in vitro. In addition, we found that such treatment initially promotes the activation and proliferation of Ag-specific CD4+ T cells but subsequently increases their probability of undergoing activation-induced cell death, thereby inhibiting effector T cell responses. More importantly, 2A treatment also inhibits the relapse of EAE in a clinically relevant murine model of multiple sclerosis. This study indicates that the agonistic Ab against 4-1BB can potentially be used as a novel immunotherapeutic agent for treating autoimmune diseases.
Immunopathogenesis of Experimental Ulcerative Colitis Is Mediated by Eosinophil Peroxidase
Forbes, Elizabeth, Murase, Tosei, Yang, Ming , Matthaei, Klaus I., Lee, James J. , Lee, Nancy A., Foster, Paul S. , Hogan, Simon Patrick

The Journal of Immunology | April 20, 2014 | Volume: 172 | Issue: 9 | Pages: 5664-5675

10.4049/jimmunol.172.9.5664 | PMID 15100311 Get It

Abstract The precise role that individual inflammatory cells and mediators play in the development of gastrointestinal (GI) dysfunction and extraintestinal clinical manifestations of ulcerative colitis (UC) is unknown. In this study, we have used a mouse model of UC to establish a central role for eotaxin and, in turn, eosinophils in the development of the immunopathogenesis of this disease. In this model the administration of dextran sodium sulfate (DSS) induces a prominent colonic eosinophilic inflammation and GI dysfunction (diarrhea with blood and shortening of the colon) that resembles UC in patients. GI dysfunction was associated with evidence of eosinophilic cytolytic degranulation and the release of eosinophil peroxidase (EPO) into the colon lumen. By using IL-5 or eotaxin-deficient mice, we show an important role for eotaxin in eosinophil recruitment into the colon during experimental UC. Furthermore, using EPO-deficient mice and an EPO inhibitor resorcinol we demonstrate that eosinophil-derived peroxidase is critical in the development of GI dysfunction in experimental UC. These findings provide direct evidence of a central role for eosinophils and EPO in GI dysfunction and potentially the immunopathogenesis of UC.