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2932 citation(s) found for "Ryan, S".

Clinicopathologic subtype of Alzheimer's disease presenting as corticobasal syndrome
Sakae, Nobutaka, Josephs, Keith A. , Murray, Melissa E. , Duara, Ranjan , Uitti, Ryan J. , Gerpen, Jay Van, Graff-Radford, N. R., Van Gerpen, Jay, Graff-Radford, Neil R, Murray, Melissa E , Litvan, Irene , Duara, Ranjan , Wszołek, Zbigniew K. , Gerpen, Jay A. van, Dickson, Dennis W.

Alzheimer's & Dementia | August 6, 2019 | Volume: 15 | Issue: 9 | Pages: 1218-1228

10.1016/j.jalz.2019.04.011 | PMID 31399334 Get It

Abstract Introduction The corticobasal syndrome (CBS) is associated with several neuropathologic disorders, including corticobasal degeneration and Alzheimer's disease (AD). Method In this report, we studied 43 AD patients with CBS (AD‐CBS) and compared them with 42 AD patients with typical amnestic syndrome (AD‐AS), as well as 15 cases of corticobasal degeneration and CBS pathology. Results Unlike AD‐AS, AD‐CBS had prominent motor problems, including limb apraxia (90%), myoclonus (81%), and gait disorders (70%). Alien limb phenomenon was reported in 26% and cortical sensory loss in 14%. Language problems were also more frequent in AD‐CBS, and memory impairment was less frequent. AD‐CBS had more tau pathology in perirolandic cortices but less in superior temporal cortex than AD‐AS. In addition, AD‐CBS had greater neuronal loss in the substantia nigra. Discussion AD‐CBS is a clinicopathological subtype of AD with an atypical distribution of Alzheimer‐type tau pathology. Greater neuronal loss in the substantia nigra may contribute to Parkinsonism which is not a feature of typical AD.
A Predictive Model for Nodal Metastases in Patients With Appendiceal Cancers
Day, Ryan W. , Stucky, Chee-Chee, Gray, Richard J. , Pockaj, Barbara A. , Wasif, Nabil , Pockaj, Barbara, Chang, Yu‐Hui

Annals of Surgery | July 30, 2019 | Volume: 274 | Issue: 1 | Pages: 155-161

10.1097/sla.0000000000003501 | PMID 31361626 Get It

Background: Histologic subtypes of appendiceal cancer vary in their propensity for metastases to regional lymph nodes (LN). A predictive model would help direct subsequent surgical therapy. Methods: The National Cancer Database was queried for patients with appendiceal cancer undergoing surgery between 1998 and 2012. Multivariable logistic regression was used to develop a predictive model of LN metastases which was internally validated using Brier score and Area under the Curve (AUC). Results: A total of 21,647 patients were identified, of whom 9079 (41.9%) had node negative disease, 4575 (21.1%) node positive disease, and 7993 (36.9%) unknown LN status. The strongest predictors of LN positivity were histology (carcinoid tumors OR 12.78, 95% CI 9.01–18.12), increasing T Stage (T3 OR 3.36, 95% CI 2.52–4.50, T4 OR 6.30, 95% CI 4.71–8.42), and tumor grade (G3 OR 5.55, 95% CI 4.78–6.45, G4 OR 5.98, 95% CI 4.30–8.31). The coefficients from the regression analysis were used to construct a calculator that generated predicted probabilities of LN metastases given certain inputs. Internal validation of the overall model showed an AUC of 0.75 (95% CI 0.74–0.76) and Brier score of 0.188. Histology-specific predictive models were also constructed with an AUC that varied from 0.669 for signet cell to 0.75 for goblet cell tumors. Conclusions: The risk for nodal metastases in patients with appendiceal cancers can be quantified with reasonable accuracy using a predictive model incorporating patient age, sex, tumor histology, T-stage, and grade. This can help inform clinical decision making regarding the need for a right hemicolectomy following appendectomy.
Prediction of Risk of Death for Patients Starting Dialysis
Anderson, Ryan T. , Cleek, Hailey, Pajouhi, Atieh, Bellolio, Fernanda , Mayukha, Ananya, Hickson, LaTonya J. , Feely, Molly A., Wilson, Michael E. , Connolly, Ryan M. Giddings, Erwin, Patricia J., Majzoub, Abdul M., Tangri, Navdeep , Hickson, LaTonya J , Bellolio, M Fernanda , Anderson, Ryan T., Hart, Allyson , Thorsteinsdottir, Bjorg

Clinical Journal of the American Society of Nephrology | July 30, 2019 | Volume: 14 | Issue: 8 | Pages: 1213-1227

10.2215/cjn.00050119 | PMID 31362990 Get It

Background and objectives Dialysis is a preference-sensitive decision where prognosis may play an important role. Although patients desire risk prediction, nephrologists are wary of sharing this information. We reviewed the performance of prognostic indices for patients starting dialysis to facilitate bedside translation. Design, setting, participants, & measurements Systematic review and meta-analysis following the PRISMA guidelines. We searched Ovid MEDLINE, Ovid Embase, Ovid Central Register of Controlled Trials, Ovid Cochrane Database of Systematic Reviews, and Scopus for eligible studies of patients starting dialysis published from inception to December 31, 2018. Selection Criteria: Articles describing validated prognostic indices predicting mortality at the start of dialysis. We excluded studies limited to prevalent dialysis patients, AKI and studies excluding mortality in the first 1–3 months. Two reviewers independently screened abstracts, performed full text assessment of inclusion criteria and extracted: study design, setting, population demographics, index performance and risk of bias. Pre-planned random effects meta-analysis was performed stratified by index and predictive window to reduce heterogeneity. Results Of 12,132 articles screened and 214 reviewed in full text, 36 studies were included describing 32 prognostic indices. Predictive windows ranged from 3 months to 10 years, cohort sizes from 46 to 52,796. Meta-analysis showed discrimination area under the curve (AUC) of 0.71 (95% confidence interval, 0.69 to 073) with high heterogeneity ( I 2 =99.12). Meta-analysis by index showed highest AUC for The Obi, Ivory, and Charlson comorbidity index (CCI)=0.74, also CCI was the most commonly used (ten studies). Other commonly used indices were Kahn-Wright index (eight studies, AUC 0.68), Hemmelgarn modification of the CCI (six studies, AUC 0.66) and REIN index (five studies, AUC 0.69). Of the indices, ten have been validated externally, 16 internally and nine were pre-existing validated indices. Limitations include heterogeneity and exclusion of large cohort studies in prevalent patients. Conclusions Several well validated indices with good discrimination are available for predicting survival at dialysis start.
In silico DNA methylation analysis identifies potential prognostic biomarkers in type 2 papillary renal cell carcinoma
Yang, Man , Hlady, Ryan A. , Ho, Thai H. , Robertson, Keith D. , Zhou, Dan , Ho, Thai , Robertson, Keith D

Cancer Medicine | July 30, 2019 | Volume: 8 | Issue: 12 | Pages: 5760-5768

10.1002/cam4.2402 | PMID 31361072 Get It

AbstractThere are currently no effective treatments for advanced‐stage papillary renal cell carcinoma (PRCC). The goal of this study is to define potential DNA methylation‐based markers and treatment targets for advanced‐stage type 2 PRCC. Progressive DNA methylation changes and copy number variation (CNV) from localized to advanced‐stage type 2 PRCC are analyzed by using methylation data generated by TCGA's kidney renal papillary cell carcinoma (TCGA‐KIRP, 450k array) project. Survival analyses are performed for the identified biomarkers and genes with CNV. In addition, expression of the corresponding genes is investigated by RNA‐seq analysis. Progressive methylation changes in several CpGs from localized to advanced‐stage type 2 PRCC are observed. Four CpGs (cg00489401, cg27649239, cg20555674, and cg07196505) in particular are identified as markers for differentiating between localized and advanced‐stage type 2 PRCC. Copy number analysis reveals that copy gain of PTK7 mostly occurs in advanced‐stage type 2 PRCC. Both the four CpG methylation changes and PTK7 copy number gain are associated with patient survival. RNA‐seq analysis demonstrates that PTK7 copy gain leads to higher PTK7 expression relative to tumors without copy number gain. Moreover, PTK7 is significantly upregulated from localized to advanced‐stage type 2 PRCC and is linked to cancer cell invasion. In conclusion, DNA methylation markers that differentiate between localized and advanced‐stage type 2 PRCC may serve as useful markers for disease staging or outcome, while PTK7 copy gain represents a potential treatment target for advanced‐stage type 2 PRCC. Stepwise methylation changes and copy number gain also associate with disease stage in PRCC patients.
PERSISTENT PLACOID MACULOPATHY-LIKE FINDINGS IN PATIENTS WITH GIANT CELL ARTERITIS
Starr, Matthew R. , Fairbanks, Aaron M. , Geraets, Ryan D., Chen, John , Pulido, José S. , Chen, John J. , Chen, John J , Starr, Matthew R

RETINAL Cases & Brief Reports | July 24, 2019 | Volume: 15 | Issue: 6 | Pages: 682-687

10.1097/icb.0000000000000894 | PMID 31343560 Get It

Purpose: To describe two patients with giant cell arteritis who presented with macular lesions mimicking persistent placoid maculopathy. Methods: Retrospective case reports. Patient: Two patients, a 74-year-old man and an 85-year-old woman both were diagnosed with biopsy-confirmed giant cell arteritis with vision loss in one eye due to arteritic ischemic optic neuropathy. Both presented many years later with acute vision loss in the remaining eye. Results: Both patients had bilateral retinal whitening in the parafovea, and the second also had sectoral optic disk swelling. On fluorescein angiography, these areas of retinal whitening in both patients were hypofluorescent early with late hyperfluorescence staining. On indocyanine green angiography, there were areas of foveal hypocyanescence bilaterally in both patients that persisted throughout the imaging and were more apparent late. These findings can be seen in patients with bilateral persistent placoid maculopathy. Conclusion: Giant cell arteritis should be included in the differential diagnosis of persistent placoid maculopathy.
Molecular profiling of long-term IDH-wildtype glioblastoma survivors
Yang, Jie , Decker, Paul A. , Kollmeyer, Thomas M. , Kosel, Matthew , Mladek, Ann C. , Caron, Alissa, Kitange, Gaspar J. , Sicotte, Hugues , Youland, Ryan S. , Voss, Jesse S. , Kolsky, K. L., Meyer, Fredric B. , Parney, Ian, Kipp, Benjamin R. , Sulman, Erik P. , Jenkins, Robert B. , Eckel‐Passow, Jeanette E. , Burgenske, Danielle M. , Caron, Alissa A, Gupta, Shiv K. , Fritcher, Emily G. Barr , Kolsky, Kathryn L, Parney, Ian J, Kollmeyer, Thomas , Sulman, Erik P , Mladek, Ann C , Decker, Paul A. , Vaubel, Rachael A. , Remonde, Dioval , Ida, Cristiane M. , Lachance, Daniel Honore , Giannini, Caterina , Sarkaria, Jann N.

Neuro-Oncology | July 24, 2019 | Volume: 21 | Issue: 11 | Pages: 1458-1469

10.1093/neuonc/noz129 | PMID 31346613 Get It

AbstractBackgroundGlioblastoma (GBM) represents an aggressive cancer type with a median survival of only 14 months. With fewer than 5% of patients surviving 5 years, comprehensive profiling of these rare patients could elucidate prognostic biomarkers that may confer better patient outcomes. We utilized multiple molecular approaches to characterize the largest patient cohort of isocitrate dehydrogenase (IDH)–wildtype GBM long-term survivors (LTS) to date.MethodsRetrospective analysis was performed on 49 archived formalin-fixed paraffin embedded tumor specimens from patients diagnosed with GBM at the Mayo Clinic between December 1995 and September 2013. These patient samples were subdivided into 2 groups based on survival (12 LTS, 37 short-term survivors [STS]) and subsequently examined by mutation sequencing, copy number analysis, methylation profiling, and gene expression.ResultsOf the 49 patients analyzed in this study, LTS were younger at diagnosis (P = 0.016), more likely to be female (P = 0.048), and MGMT promoter methylated (UniD, P = 0.01). IDH-wildtype STS and LTS demonstrated classic GBM mutations and copy number changes. Pathway analysis of differentially expressed genes showed LTS enrichment for sphingomyelin metabolism, which has been linked to decreased GBM growth, invasion, and angiogenesis. STS were enriched for DNA repair and cell cycle control networks.ConclusionsWhile our findings largely report remarkable similarity between these LTS and more typical STS, unique attributes were observed in regard to altered gene expression and pathway enrichment. These attributes may be valuable prognostic markers and are worth further examination. Importantly, this study also underscores the limitations of existing biomarkers and classification methods in predicting patient prognosis.
An Exploratory Analysis of Real-World End Points for Assessing Outcomes Among Immunotherapy-Treated Patients With Advanced Non–Small-Cell Lung Cancer
Norden, Andrew D., Henk, Henry J. , Mansfield, Aaron S. , Arunajadai, Srikesh, Carnahan, Ryan M. , Christian, Jennifer , Torres, Aracelis Z. , Mansfield, Aaron S , Stewart, Mark D. , Dreyer, Nancy A , Abernethy, Amy P. , Chrischilles, Elizabeth A. , Kushi, Lawrence H. , Khozin, Sean , Sharon, Elad , Miksad, Rebecca Anne , Sakoda, Lori C. , Valice, Emily , Allen, Jeff D.

JCO Clinical Cancer Informatics | July 23, 2019 | Volume: No volume available | Issue: 3 | Pages: 1-15

10.1200/cci.18.00155 | PMID 31335166 Get It

PURPOSE This pilot study examined the ability to operationalize the collection of real-world data to explore the potential use of real-world end points extracted from data from diverse health care data organizations and to assess how these relate to similar end points in clinical trials for immunotherapy-treated advanced non–small-cell lung cancer. PATIENTS AND METHODS Researchers from six organizations followed a common protocol using data from administrative claims and electronic health records to assess real-world end points, including overall survival (rwOS), time to next treatment, time to treatment discontinuation (rwTTD), time to progression, and progression-free survival, among patients with advanced non–small-cell lung cancer treated with programmed death 1/programmed death-ligand 1 inhibitors in real-world settings. Data sets included from 269 to 6,924 patients who were treated between January 2011 and October 2017. Results from contributors were anonymized. RESULTS Correlations between real-world intermediate end points (rwTTD and time to next treatment) and rwOS were moderate to high (range, 0.6 to 0.9). rwTTD was the most consistent end points as treatment detail was available in all data sets. rwOS at 1 year post–programmed death-ligand 1 initiation ranged from 40% to 57%. In addition, rwOS as assessed via electronic health records and claims data fell within the range of median OS values observed in relevant clinical trials. Data sources had been used extensively for research with ongoing data curation to assure accuracy and practical completeness before the initiation of this research. CONCLUSION These findings demonstrate that real-world end points are generally consistent with each other and with outcomes observed in randomized clinical trials, which substantiates the potential validity of real-world data to support regulatory and payer decision making. Differences observed likely reflect true differences between real-world and protocol-driven practices.
Alkalinizing Agents: A Review of Prescription, Over-the-Counter, and Medical Food Supplements
Stern, Karen , Canvasser, Noah, Borofsky, Michael S. , Gleason, Vanessa, Kamphuis, Guido M. , Tayeb, Marawan M. El , Hsi, Ryan S. , Scotland, Kymora B. , Stern, Karen L, Stern, Karen L , Hsi, Ryan

Journal of Endourology | July 23, 2019 | Volume: 34 | Issue: 1 | Pages: 1-6

10.1089/end.2019.0292 | PMID 31333065 Get It

Trans-endocytosis elicited by nectins transfers cytoplasmic cargo, including infectious material, between cells
Generous, Alex R., Harrison, O.J. , Troyanovsky, Regina B. , Mateo, Mathieu , Navaratnarajah, Chanakha K. , Donohue, Ryan C. , Pfaller, Christian K. , Alekhina, Olga , Sergeeva, Alina P. , Indra, Indrajyoti , Thornburg, Theresa, Kochetkova, Irina , Billadeau, Daniel D. , Troyanovsky, Sergey M. , Honig, Barry , Shapiro, Lawrence , Cattaneo, Roberto , Cattaneo, Roberto , Pfaller, Christian K , Taylor, Matthew P.

Journal of Cell Science | July 22, 2019 | Volume: 132 | Issue: 16 | Pages: No page available

10.1242/jcs.235507 | PMID 31331966 Get It

ABSTRACT Here, we show that cells expressing the adherens junction protein nectin-1 capture nectin-4-containing membranes from the surface of adjacent cells in a trans-endocytosis process. We find that internalized nectin-1–nectin-4 complexes follow the endocytic pathway. The nectin-1 cytoplasmic tail controls transfer: its deletion prevents trans-endocytosis, while its exchange with the nectin-4 tail reverses transfer direction. Nectin-1-expressing cells acquire dye-labeled cytoplasmic proteins synchronously with nectin-4, a process most active during cell adhesion. Some cytoplasmic cargo remains functional after transfer, as demonstrated with encapsidated genomes of measles virus (MeV). This virus uses nectin-4, but not nectin-1, as a receptor. Epithelial cells expressing nectin-4, but not those expressing another MeV receptor in its place, can transfer infection to nectin-1-expressing primary neurons. Thus, this newly discovered process can move cytoplasmic cargo, including infectious material, from epithelial cells to neurons. We name the process nectin-elicited cytoplasm transfer (NECT). NECT-related trans-endocytosis processes may be exploited by pathogens to extend tropism. This article has an associated First Person interview with the first author of the paper.